Clone Sequence Records
BO09464.3prime Sequence
945 bp (741 high quality bases) assembled on 2006-01-23
> BO09464.3prime
ATGGTCTAGAAAGCTTGCAAAGTCGTAGAACTCGTTCGATTTGTTGTTGA
AGCGCCGCGTGAGCACATAGACGACCGCCTCATAGGTGGCCATCATGATC
GCCGTGTTGGGAATCTGTCGCACCAGCTGCGTGGCCAAGCCTCTGTAGAG
TCCTGCTCTGCCCTCCTCCTTCCAAACAGTGTGCAGGGTCTGCCAGAAGG
AGTTGTATTTGTTGCCCTCCTCCCGCAGACGAGTGCGTGCCACTTCGTGG
GGATAGGCGATGCAGGAGGCGATGGTTTTGGAAACAGCGCCAGCCATCAT
GAACTCCAGAAAGTCGCGGGATCCCTTGGTGTCCGTATGCCGCTGATTTC
GCTGCTCTAGCAACTTGGACTTGATAAACTCGTAGATGACAAAGTGCACC
ATCGTCTCGCAGATTCCAAAGTAGCTGGCCGTGATGCCCTTGTAGAAGGC
CGCCACGCCTCCCTGGGCGTACACCCTCTCGATGCACTGCCTCACGGTCA
TCTGCACCTTGGAGTTGTAGTCCAGCTGCATTCGCGTCTTCACAAACCAA
ATGGGATTCGTTGCCGTGGAGGAGACAAAGCCGGCACTCGCTGCACTCAT
GATGTGCACCAGTGGCGAGTCACGTTCAACAAAGCCCAGACTGTTGAGCG
TGTTTTTGGTTTGCGAGTAGGTGCAGAAGTAAATGGCACGGGATGGGGCC
ACGCCCACGAGATTCGGACCCAGACCCTTGAACAGGGCGCGTGGACCCTC
GTTCTGGACAATGTGCCGCAGGCACTGCACGATGCTCATGGATTTGGGCG
TTGTGGATGAGATGCCGCAGTGTGAAATGGCCATGATCCTACGCACACCC
CCAATCACCTGTGGCTGTGATCTGTTACGTAATATCGTTGTGCTTAGCTT
ACGTCGTTGTCCCGGCCGCAGCAGCTCCGATTGGGCACGTTCGCC
BO09464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18317-PA | 1098 | CG18317-RA | 180..1095 | 934..19 | 4555 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rim2-RA | 1762 | CG18317-RA | 628..1555 | 945..19 | 4585 | 99.7 | Minus |
Rim2-RC | 2396 | CG18317-RC | 628..1534 | 945..19 | 4260 | 97.4 | Minus |
Rim2-RD | 2352 | CG18317-RD | 672..1490 | 837..19 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1717878..1718152 | 361..635 | 1375 | 100 | Plus |
2L | 23513712 | 2L | 1717598..1717816 | 143..361 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 1718227..1718359 | 635..767 | 665 | 100 | Plus |
2L | 23513712 | 2L | 1717106..1717233 | 19..146 | 640 | 100 | Plus |
2L | 23513712 | 2L | 1718675..1718775 | 838..938 | 475 | 98 | Plus |
2L | 23513712 | 2L | 1718420..1718492 | 766..838 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:02:15 has no hits.
BO09464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:29 Download gff for
BO09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-PA | 168..1098 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:40 Download gff for
BO09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-PA | 168..1098 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:34:29 Download gff for
BO09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-RA | 628..1555 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:05:03 Download gff for
BO09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rim2-RA | 628..1555 | 19..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:05:03 Download gff for
BO09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1718421..1718491 | 767..837 | 100 | <- | Plus |
2L | 1718675..1718783 | 838..945 | 97 | | Plus |
2L | 1717106..1717229 | 19..142 | 100 | <- | Plus |
2L | 1717598..1717815 | 143..360 | 100 | <- | Plus |
2L | 1717878..1718151 | 361..634 | 100 | <- | Plus |
2L | 1718227..1718358 | 635..766 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:34:29 Download gff for
BO09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1717106..1717229 | 19..142 | 100 | <- | Plus |
arm_2L | 1717598..1717815 | 143..360 | 100 | <- | Plus |
arm_2L | 1717878..1718151 | 361..634 | 100 | <- | Plus |
arm_2L | 1718227..1718358 | 635..766 | 100 | <- | Plus |
arm_2L | 1718421..1718491 | 767..837 | 100 | <- | Plus |
arm_2L | 1718675..1718783 | 838..945 | 97 | | Plus |
BO09464.5prime Sequence
882 bp (848 high quality bases) assembled on 2006-01-23
> BO09464.5prime
GAAGTTATCAGTCGACATGGCCCAGAACACGGCCGACACTCTCATCCACC
TGATCGCCGGCGGATCCGCTGGCACAGTGGGTGCCGTTGTCACATGCCCC
CTGGAGGTGGTGAAGACTCGCCTGCAGAGCTCCACGGCGTTCATGACGCC
GTCGCGGCTGGCGGAGAATGCCGGAGGAGGACCGGCGAACGGTGGCCAAT
CGGAGCTGCTGCGGCCGGAACAACGACGTAAGCTAAGCACAACGATATTA
CGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGATCATGGC
CATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCATGAGCATCG
TGCAGTGCCTGCGGCACATTGTCCAGAACGAGGGTCCACGCGCCCTGTTC
AAGGGTCTGGGTCCGAATCTCGTGGGCGTGGCCCCATCCCGTGCCATTTA
CTTCTGCACCTACTCGCAAACCAAAAACACGCTCAACAGTCTGGGCTTTG
TTGAACGTGACTCGCCACTGGTGCACATCATGAGTGCAGCGAGTGCCGGC
TTTGTCTCCTCCACGGCAACGAATCCCATTTGGTTTGTGAAGACGCGAAT
GCAGCTGGACTACAACTCCAAGGTGCAGATGACCGTGAGGCAGTGCATCG
AGAGGGTGTACGCCCAGGGAGGCGTGGCGGCCTTCTACAAGGGCATCACG
GCCAGCTACTTTGGAATCTGCGAGACGATGGTGCACTTTGTCATCTACGA
GTTTATCAAGTCCAAGTTGCTAGAGCAGCGAAATCAGCGGCATACGGACA
CCAAGGGATCCCGCGACTTTCTGGAGTTCATGATGGCTGGCGCTGTTTCC
AAAACATCGCCTCCTGCATCGCCTATCCCCAC
BO09464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18317-PA | 1098 | CG18317-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
CG18317-PA | 1098 | CG18317-RA | 840..867 | 855..882 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rim2-RA | 1762 | CG18317-RA | 461..1327 | 17..882 | 4310 | 99.9 | Plus |
Rim2-RC | 2396 | CG18317-RC | 461..1306 | 17..882 | 3985 | 97.5 | Plus |
Rim2-RD | 2352 | CG18317-RD | 672..1262 | 293..882 | 2930 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1717878..1718152 | 769..495 | 1375 | 100 | Minus |
2L | 23513712 | 2L | 1718675..1718904 | 292..63 | 1150 | 100 | Minus |
2L | 23513712 | 2L | 1718227..1718359 | 495..363 | 665 | 100 | Minus |
2L | 23513712 | 2L | 1717702..1717816 | 882..769 | 525 | 99.1 | Minus |
2L | 23513712 | 2L | 1718420..1718492 | 364..292 | 365 | 100 | Minus |
2L | 23513712 | 2L | 1723882..1723928 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:08:38 has no hits.
BO09464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:30 Download gff for
BO09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:41 Download gff for
BO09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:42 Download gff for
BO09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-RA | 453..1327 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:56 Download gff for
BO09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rim2-RA | 453..1327 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:56 Download gff for
BO09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1718675..1718903 | 64..292 | 100 | <- | Minus |
2L | 1723882..1723936 | 9..63 | 92 | | Minus |
2L | 1717702..1717815 | 770..882 | 99 | <- | Minus |
2L | 1717878..1718151 | 496..769 | 100 | <- | Minus |
2L | 1718227..1718358 | 364..495 | 100 | <- | Minus |
2L | 1718421..1718491 | 293..363 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:42 Download gff for
BO09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1718675..1718903 | 64..292 | 100 | <- | Minus |
arm_2L | 1723882..1723936 | 9..63 | 92 | | Minus |
arm_2L | 1717702..1717815 | 770..882 | 99 | <- | Minus |
arm_2L | 1717878..1718151 | 496..769 | 100 | <- | Minus |
arm_2L | 1718227..1718358 | 364..495 | 100 | <- | Minus |
arm_2L | 1718421..1718491 | 293..363 | 100 | <- | Minus |
BO09464.complete Sequence
1129 bp (1129 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631506
> BO09464.complete
GAAGTTATCAGTCGACATGGCCCAGAACACGGCCGACACTCTCATCCACC
TGATCGCCGGCGGATCCGCTGGCACAGTGGGTGCCGTTGTCACATGCCCC
CTGGAGGTGGTGAAGACTCGCCTGCAGAGCTCCACGGCGTTCATGACGCC
GTCGCGGCTGGCGGAGAATGCCGGAGGAGGACCGGCGAACGGTGGCCAAT
CGGAGCTGCTGCGGCCGGAACAACGACGTAAGCTAAGCACAACGATATTA
CGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGATCATGGC
CATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCATGAGCATCG
TGCAGTGCCTGCGGCACATTGTCCAGAACGAGGGTCCACGCGCCCTGTTC
AAGGGTCTGGGTCCGAATCTCGTGGGCGTGGCCCCATCCCGTGCCATTTA
CTTCTGCACCTACTCGCAAACCAAAAACACGCTCAACAGTCTGGGCTTTG
TTGAACGTGACTCGCCACTGGTGCACATCATGAGTGCAGCGAGTGCCGGC
TTTGTCTCCTCCACGGCAACGAATCCCATTTGGTTTGTGAAGACGCGAAT
GCAGCTGGACTACAACTCCAAGGTGCAGATGACCGTGAGGCAGTGCATCG
AGAGGGTGTACGCCCAGGGAGGCGTGGCGGCCTTCTACAAGGGCATCACG
GCCAGCTACTTTGGAATCTGCGAGACGATGGTGCACTTTGTCATCTACGA
GTTTATCAAGTCCAAGTTGCTAGAGCAGCGAAATCAGCGGCATACGGACA
CCAAGGGATCCCGCGACTTTCTGGAGTTCATGATGGCTGGCGCTGTTTCC
AAAACCATCGCCTCCTGCATCGCCTATCCCCACGAAGTGGCACGCACTCG
TCTGCGGGAGGAGGGCAACAAATACAACTCCTTCTGGCAGACCCTGCACA
CTGTTTGGAAGGAGGAGGGCAGAGCAGGACTCTACAGAGGCTTGGCCACG
CAGCTGGTGCGACAGATTCCCAACACGGCGATCATGATGGCCACCTATGA
GGCGGTCGTCTATGTGCTCACGCGGCGCTTCAACAACAAATCGAACGAGT
TCTACGACTTTGCAAGCTTTCTAGACCAT
BO09464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rim2-RA | 1098 | CG18317-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Rim2-RC | 1077 | CG18317-PC | 1..1074 | 17..1111 | 5125 | 98.1 | Plus |
Rim2-RD | 819 | CG18317-PD | 1..816 | 296..1111 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rim2-RA | 1762 | CG18317-RA | 461..1555 | 17..1111 | 5475 | 100 | Plus |
Rim2-RC | 2396 | CG18317-RC | 461..1534 | 17..1111 | 5125 | 98.1 | Plus |
Rim2-RD | 2352 | CG18317-RD | 672..1490 | 293..1111 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1717878..1718152 | 769..495 | 1375 | 100 | Minus |
2L | 23513712 | 2L | 1718675..1718904 | 292..63 | 1150 | 100 | Minus |
2L | 23513712 | 2L | 1717598..1717816 | 987..769 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 1718227..1718359 | 495..363 | 665 | 100 | Minus |
2L | 23513712 | 2L | 1717106..1717233 | 1111..984 | 640 | 100 | Minus |
2L | 23513712 | 2L | 1718420..1718492 | 364..292 | 365 | 100 | Minus |
2L | 23513712 | 2L | 1723882..1723928 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:03:29 has no hits.
BO09464.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:30 Download gff for
BO09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-RA | 1..1098 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:00 Download gff for
BO09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-RA | 456..1558 | 9..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:44 Download gff for
BO09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-RA | 461..1555 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:30 Download gff for
BO09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18317-RA | 456..1558 | 9..1111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:32 Download gff for
BO09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rim2-RA | 461..1555 | 17..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:32 Download gff for
BO09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1717878..1718151 | 496..769 | 100 | <- | Minus |
2L | 1718227..1718358 | 364..495 | 100 | <- | Minus |
2L | 1718421..1718491 | 293..363 | 100 | <- | Minus |
2L | 1718675..1718903 | 64..292 | 100 | <- | Minus |
2L | 1723882..1723928 | 17..63 | 100 | | Minus |
2L | 1717104..1717229 | 988..1113 | 98 | <- | Minus |
2L | 1717598..1717815 | 770..987 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:44 Download gff for
BO09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1723882..1723928 | 17..63 | 100 | | Minus |
arm_2L | 1718227..1718358 | 364..495 | 100 | <- | Minus |
arm_2L | 1718421..1718491 | 293..363 | 100 | <- | Minus |
arm_2L | 1718675..1718903 | 64..292 | 100 | <- | Minus |
arm_2L | 1717104..1717229 | 988..1113 | 98 | <- | Minus |
arm_2L | 1717598..1717815 | 770..987 | 100 | <- | Minus |
arm_2L | 1717878..1718151 | 496..769 | 100 | <- | Minus |
BO09464.pep Sequence
Translation from 16 to 1129
> BO09464.pep
MAQNTADTLIHLIAGGSAGTVGAVVTCPLEVVKTRLQSSTAFMTPSRLAE
NAGGGPANGGQSELLRPEQRRKLSTTILRNRSQPQVIGGVRRIMAISHCG
ISSTTPKSMSIVQCLRHIVQNEGPRALFKGLGPNLVGVAPSRAIYFCTYS
QTKNTLNSLGFVERDSPLVHIMSAASAGFVSSTATNPIWFVKTRMQLDYN
SKVQMTVRQCIERVYAQGGVAAFYKGITASYFGICETMVHFVIYEFIKSK
LLEQRNQRHTDTKGSRDFLEFMMAGAVSKTIASCIAYPHEVARTRLREEG
NKYNSFWQTLHTVWKEEGRAGLYRGLATQLVRQIPNTAIMMATYEAVVYV
LTRRFNNKSNEFYDFASFLDH
BO09464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rim2-PA | 365 | CG18317-PA | 1..365 | 1..365 | 1880 | 100 | Plus |
Rim2-PC | 358 | CG18317-PC | 1..358 | 1..365 | 1828 | 98.1 | Plus |
Rim2-PD | 272 | CG18317-PD | 1..272 | 94..365 | 1418 | 100 | Plus |
CG8026-PD | 322 | CG8026-PD | 55..309 | 100..354 | 350 | 30.6 | Plus |
CG8026-PB | 304 | CG8026-PB | 55..300 | 100..345 | 338 | 30.5 | Plus |