Clone BO09464 Report

Search the DGRC for BO09464

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG18317-RA
Protein status:BO09464.pep: validated full length
Sequenced Size:1129

Clone Sequence Records

BO09464.3prime Sequence

945 bp (741 high quality bases) assembled on 2006-01-23

> BO09464.3prime
ATGGTCTAGAAAGCTTGCAAAGTCGTAGAACTCGTTCGATTTGTTGTTGA
AGCGCCGCGTGAGCACATAGACGACCGCCTCATAGGTGGCCATCATGATC
GCCGTGTTGGGAATCTGTCGCACCAGCTGCGTGGCCAAGCCTCTGTAGAG
TCCTGCTCTGCCCTCCTCCTTCCAAACAGTGTGCAGGGTCTGCCAGAAGG
AGTTGTATTTGTTGCCCTCCTCCCGCAGACGAGTGCGTGCCACTTCGTGG
GGATAGGCGATGCAGGAGGCGATGGTTTTGGAAACAGCGCCAGCCATCAT
GAACTCCAGAAAGTCGCGGGATCCCTTGGTGTCCGTATGCCGCTGATTTC
GCTGCTCTAGCAACTTGGACTTGATAAACTCGTAGATGACAAAGTGCACC
ATCGTCTCGCAGATTCCAAAGTAGCTGGCCGTGATGCCCTTGTAGAAGGC
CGCCACGCCTCCCTGGGCGTACACCCTCTCGATGCACTGCCTCACGGTCA
TCTGCACCTTGGAGTTGTAGTCCAGCTGCATTCGCGTCTTCACAAACCAA
ATGGGATTCGTTGCCGTGGAGGAGACAAAGCCGGCACTCGCTGCACTCAT
GATGTGCACCAGTGGCGAGTCACGTTCAACAAAGCCCAGACTGTTGAGCG
TGTTTTTGGTTTGCGAGTAGGTGCAGAAGTAAATGGCACGGGATGGGGCC
ACGCCCACGAGATTCGGACCCAGACCCTTGAACAGGGCGCGTGGACCCTC
GTTCTGGACAATGTGCCGCAGGCACTGCACGATGCTCATGGATTTGGGCG
TTGTGGATGAGATGCCGCAGTGTGAAATGGCCATGATCCTACGCACACCC
CCAATCACCTGTGGCTGTGATCTGTTACGTAATATCGTTGTGCTTAGCTT
ACGTCGTTGTCCCGGCCGCAGCAGCTCCGATTGGGCACGTTCGCC

BO09464.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18317-PA 1098 CG18317-RA 180..1095 934..19 4555 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rim2-RA 1762 CG18317-RA 628..1555 945..19 4585 99.7 Minus
Rim2-RC 2396 CG18317-RC 628..1534 945..19 4260 97.4 Minus
Rim2-RD 2352 CG18317-RD 672..1490 837..19 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1717878..1718152 361..635 1375 100 Plus
2L 23513712 2L 1717598..1717816 143..361 1095 100 Plus
2L 23513712 2L 1718227..1718359 635..767 665 100 Plus
2L 23513712 2L 1717106..1717233 19..146 640 100 Plus
2L 23513712 2L 1718675..1718775 838..938 475 98 Plus
2L 23513712 2L 1718420..1718492 766..838 365 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:02:15 has no hits.

BO09464.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:29 Download gff for BO09464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18317-PA 168..1098 18..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:40 Download gff for BO09464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18317-PA 168..1098 18..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:34:29 Download gff for BO09464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18317-RA 628..1555 19..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:05:03 Download gff for BO09464.3prime
Subject Subject Range Query Range Percent Splice Strand
Rim2-RA 628..1555 19..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:05:03 Download gff for BO09464.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1718421..1718491 767..837 100 <- Plus
2L 1718675..1718783 838..945 97   Plus
2L 1717106..1717229 19..142 100 <- Plus
2L 1717598..1717815 143..360 100 <- Plus
2L 1717878..1718151 361..634 100 <- Plus
2L 1718227..1718358 635..766 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:34:29 Download gff for BO09464.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1717106..1717229 19..142 100 <- Plus
arm_2L 1717598..1717815 143..360 100 <- Plus
arm_2L 1717878..1718151 361..634 100 <- Plus
arm_2L 1718227..1718358 635..766 100 <- Plus
arm_2L 1718421..1718491 767..837 100 <- Plus
arm_2L 1718675..1718783 838..945 97   Plus

BO09464.5prime Sequence

882 bp (848 high quality bases) assembled on 2006-01-23

> BO09464.5prime
GAAGTTATCAGTCGACATGGCCCAGAACACGGCCGACACTCTCATCCACC
TGATCGCCGGCGGATCCGCTGGCACAGTGGGTGCCGTTGTCACATGCCCC
CTGGAGGTGGTGAAGACTCGCCTGCAGAGCTCCACGGCGTTCATGACGCC
GTCGCGGCTGGCGGAGAATGCCGGAGGAGGACCGGCGAACGGTGGCCAAT
CGGAGCTGCTGCGGCCGGAACAACGACGTAAGCTAAGCACAACGATATTA
CGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGATCATGGC
CATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCATGAGCATCG
TGCAGTGCCTGCGGCACATTGTCCAGAACGAGGGTCCACGCGCCCTGTTC
AAGGGTCTGGGTCCGAATCTCGTGGGCGTGGCCCCATCCCGTGCCATTTA
CTTCTGCACCTACTCGCAAACCAAAAACACGCTCAACAGTCTGGGCTTTG
TTGAACGTGACTCGCCACTGGTGCACATCATGAGTGCAGCGAGTGCCGGC
TTTGTCTCCTCCACGGCAACGAATCCCATTTGGTTTGTGAAGACGCGAAT
GCAGCTGGACTACAACTCCAAGGTGCAGATGACCGTGAGGCAGTGCATCG
AGAGGGTGTACGCCCAGGGAGGCGTGGCGGCCTTCTACAAGGGCATCACG
GCCAGCTACTTTGGAATCTGCGAGACGATGGTGCACTTTGTCATCTACGA
GTTTATCAAGTCCAAGTTGCTAGAGCAGCGAAATCAGCGGCATACGGACA
CCAAGGGATCCCGCGACTTTCTGGAGTTCATGATGGCTGGCGCTGTTTCC
AAAACATCGCCTCCTGCATCGCCTATCCCCAC

BO09464.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18317-PA 1098 CG18317-RA 1..839 17..855 4195 100 Plus
CG18317-PA 1098 CG18317-RA 840..867 855..882 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rim2-RA 1762 CG18317-RA 461..1327 17..882 4310 99.9 Plus
Rim2-RC 2396 CG18317-RC 461..1306 17..882 3985 97.5 Plus
Rim2-RD 2352 CG18317-RD 672..1262 293..882 2930 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1717878..1718152 769..495 1375 100 Minus
2L 23513712 2L 1718675..1718904 292..63 1150 100 Minus
2L 23513712 2L 1718227..1718359 495..363 665 100 Minus
2L 23513712 2L 1717702..1717816 882..769 525 99.1 Minus
2L 23513712 2L 1718420..1718492 364..292 365 100 Minus
2L 23513712 2L 1723882..1723928 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:08:38 has no hits.

BO09464.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:30 Download gff for BO09464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18317-PA 1..867 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:41 Download gff for BO09464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18317-PA 1..867 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:42 Download gff for BO09464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18317-RA 453..1327 9..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:56 Download gff for BO09464.5prime
Subject Subject Range Query Range Percent Splice Strand
Rim2-RA 453..1327 9..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:56 Download gff for BO09464.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1718675..1718903 64..292 100 <- Minus
2L 1723882..1723936 9..63 92   Minus
2L 1717702..1717815 770..882 99 <- Minus
2L 1717878..1718151 496..769 100 <- Minus
2L 1718227..1718358 364..495 100 <- Minus
2L 1718421..1718491 293..363 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:42 Download gff for BO09464.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1718675..1718903 64..292 100 <- Minus
arm_2L 1723882..1723936 9..63 92   Minus
arm_2L 1717702..1717815 770..882 99 <- Minus
arm_2L 1717878..1718151 496..769 100 <- Minus
arm_2L 1718227..1718358 364..495 100 <- Minus
arm_2L 1718421..1718491 293..363 100 <- Minus

BO09464.complete Sequence

1129 bp (1129 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631506

> BO09464.complete
GAAGTTATCAGTCGACATGGCCCAGAACACGGCCGACACTCTCATCCACC
TGATCGCCGGCGGATCCGCTGGCACAGTGGGTGCCGTTGTCACATGCCCC
CTGGAGGTGGTGAAGACTCGCCTGCAGAGCTCCACGGCGTTCATGACGCC
GTCGCGGCTGGCGGAGAATGCCGGAGGAGGACCGGCGAACGGTGGCCAAT
CGGAGCTGCTGCGGCCGGAACAACGACGTAAGCTAAGCACAACGATATTA
CGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGATCATGGC
CATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCATGAGCATCG
TGCAGTGCCTGCGGCACATTGTCCAGAACGAGGGTCCACGCGCCCTGTTC
AAGGGTCTGGGTCCGAATCTCGTGGGCGTGGCCCCATCCCGTGCCATTTA
CTTCTGCACCTACTCGCAAACCAAAAACACGCTCAACAGTCTGGGCTTTG
TTGAACGTGACTCGCCACTGGTGCACATCATGAGTGCAGCGAGTGCCGGC
TTTGTCTCCTCCACGGCAACGAATCCCATTTGGTTTGTGAAGACGCGAAT
GCAGCTGGACTACAACTCCAAGGTGCAGATGACCGTGAGGCAGTGCATCG
AGAGGGTGTACGCCCAGGGAGGCGTGGCGGCCTTCTACAAGGGCATCACG
GCCAGCTACTTTGGAATCTGCGAGACGATGGTGCACTTTGTCATCTACGA
GTTTATCAAGTCCAAGTTGCTAGAGCAGCGAAATCAGCGGCATACGGACA
CCAAGGGATCCCGCGACTTTCTGGAGTTCATGATGGCTGGCGCTGTTTCC
AAAACCATCGCCTCCTGCATCGCCTATCCCCACGAAGTGGCACGCACTCG
TCTGCGGGAGGAGGGCAACAAATACAACTCCTTCTGGCAGACCCTGCACA
CTGTTTGGAAGGAGGAGGGCAGAGCAGGACTCTACAGAGGCTTGGCCACG
CAGCTGGTGCGACAGATTCCCAACACGGCGATCATGATGGCCACCTATGA
GGCGGTCGTCTATGTGCTCACGCGGCGCTTCAACAACAAATCGAACGAGT
TCTACGACTTTGCAAGCTTTCTAGACCAT

BO09464.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rim2-RA 1098 CG18317-PA 1..1095 17..1111 5475 100 Plus
Rim2-RC 1077 CG18317-PC 1..1074 17..1111 5125 98.1 Plus
Rim2-RD 819 CG18317-PD 1..816 296..1111 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rim2-RA 1762 CG18317-RA 461..1555 17..1111 5475 100 Plus
Rim2-RC 2396 CG18317-RC 461..1534 17..1111 5125 98.1 Plus
Rim2-RD 2352 CG18317-RD 672..1490 293..1111 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1717878..1718152 769..495 1375 100 Minus
2L 23513712 2L 1718675..1718904 292..63 1150 100 Minus
2L 23513712 2L 1717598..1717816 987..769 1095 100 Minus
2L 23513712 2L 1718227..1718359 495..363 665 100 Minus
2L 23513712 2L 1717106..1717233 1111..984 640 100 Minus
2L 23513712 2L 1718420..1718492 364..292 365 100 Minus
2L 23513712 2L 1723882..1723928 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:03:29 has no hits.

BO09464.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:30 Download gff for BO09464.complete
Subject Subject Range Query Range Percent Splice Strand
CG18317-RA 1..1098 17..1112 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:00 Download gff for BO09464.complete
Subject Subject Range Query Range Percent Splice Strand
CG18317-RA 456..1558 9..1111 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:44 Download gff for BO09464.complete
Subject Subject Range Query Range Percent Splice Strand
CG18317-RA 461..1555 17..1113 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:30 Download gff for BO09464.complete
Subject Subject Range Query Range Percent Splice Strand
CG18317-RA 456..1558 9..1111 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:32 Download gff for BO09464.complete
Subject Subject Range Query Range Percent Splice Strand
Rim2-RA 461..1555 17..1113 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:32 Download gff for BO09464.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1717878..1718151 496..769 100 <- Minus
2L 1718227..1718358 364..495 100 <- Minus
2L 1718421..1718491 293..363 100 <- Minus
2L 1718675..1718903 64..292 100 <- Minus
2L 1723882..1723928 17..63 100   Minus
2L 1717104..1717229 988..1113 98 <- Minus
2L 1717598..1717815 770..987 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:44 Download gff for BO09464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1723882..1723928 17..63 100   Minus
arm_2L 1718227..1718358 364..495 100 <- Minus
arm_2L 1718421..1718491 293..363 100 <- Minus
arm_2L 1718675..1718903 64..292 100 <- Minus
arm_2L 1717104..1717229 988..1113 98 <- Minus
arm_2L 1717598..1717815 770..987 100 <- Minus
arm_2L 1717878..1718151 496..769 100 <- Minus

BO09464.pep Sequence

Translation from 16 to 1129

> BO09464.pep
MAQNTADTLIHLIAGGSAGTVGAVVTCPLEVVKTRLQSSTAFMTPSRLAE
NAGGGPANGGQSELLRPEQRRKLSTTILRNRSQPQVIGGVRRIMAISHCG
ISSTTPKSMSIVQCLRHIVQNEGPRALFKGLGPNLVGVAPSRAIYFCTYS
QTKNTLNSLGFVERDSPLVHIMSAASAGFVSSTATNPIWFVKTRMQLDYN
SKVQMTVRQCIERVYAQGGVAAFYKGITASYFGICETMVHFVIYEFIKSK
LLEQRNQRHTDTKGSRDFLEFMMAGAVSKTIASCIAYPHEVARTRLREEG
NKYNSFWQTLHTVWKEEGRAGLYRGLATQLVRQIPNTAIMMATYEAVVYV
LTRRFNNKSNEFYDFASFLDH

BO09464.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rim2-PA 365 CG18317-PA 1..365 1..365 1880 100 Plus
Rim2-PC 358 CG18317-PC 1..358 1..365 1828 98.1 Plus
Rim2-PD 272 CG18317-PD 1..272 94..365 1418 100 Plus
CG8026-PD 322 CG8026-PD 55..309 100..354 350 30.6 Plus
CG8026-PB 304 CG8026-PB 55..300 100..345 338 30.5 Plus