Clone BO09470 Report

Search the DGRC for BO09470

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG5326-RA
Protein status:BO09470.pep: validated full length
Sequenced Size:865

Clone Sequence Records

BO09470.3prime Sequence

863 bp (862 high quality bases) assembled on 2006-01-23

> BO09470.3prime
ATGGTCTAGAAAGCTTGCCTCCTTTTTCGCCGCCAGCTTGGCCTGGGCAG
CCGCCTCCTTCTTGTAGTTGGCCACATAGAAGGCGCTGAACATATAGGTG
AAGAGTCCAGCATTGAAGGTCAGGAGTGCGGCAATGGACTTGGGGAAGTT
GCAGTTGGGCTGGAACTGGATTTGCAGTGTGTGCACGAAGATGATCAGGA
ATTGGACAATCTGCAGGATGGTGATGTACTTCTTCCACCACAGATACTTT
TGCACCTTGGGTCCCATCGCGGAGAGCAGGTAGTAGGCGTACATAATGAT
GTGGATGAAGGAGTTAATGAATCCCAGAAGGGTTCCATGGCCACCGGCAA
AGTACTTGACCCCAATGAAGGCACACACGGGCATCAGAGTGTGGTGGTAC
AAGTGGAGGAAGGAGATCTGGCGCTGTTTCTTGCGCAGCACAAAGAACAC
GGTGTCCAACAGCTCCGTGATCTTGGCAATGTAGTACAGCCACACGGCAC
GAGCCATCCTCATGGAAATCGGATCCGATTCGTAAGTCACCGGCTGGCAC
TTGAAGTTGTAGTGGCCACCCCAGCCGCCCTTGTATCCCTCGTAGAAGAG
CACCCAGCTGAGGAGCACTTGGACCGCATTGTAGACCAGGAGAGTGTTCT
TCAGCTCGAAGGGCTTGCGATCGCGCATGTAACGAGGTCCTGCGTACAGG
CAGAAGTACAGGTAGGCTCCAAGGATCATGAACAGCGGTCCGGGGGCATT
CGAAAGGAACCATTGCTTGGTGCGCAGATCCTCGTGCTCCACGAAGAAGT
TGACCATCCGGTCAACAATGGTCGTCGTCTCGTTCAGTCTGACCGACATG
TCGACTGATAACT

BO09470.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-PA 834 CG5326-RA 1..831 849..19 4155 100 Minus
CG5326-PB 372 CG5326-RB 1..342 849..508 1710 100 Minus
CG2781-PA 990 CG2781-RA 544..612 294..226 195 91.3 Minus
CG5278-PA 888 CG5278-RA 586..626 249..209 180 97.5 Minus
CG16904-PA 789 CG16904-RA 350..404 458..404 150 90.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-RA 1694 CG5326-RA 320..1150 849..19 4155 100 Minus
CG5278-RA 1722 CG5278-RA 526..804 477..199 420 77.6 Minus
CG2781-RA 1974 CG2781-RA 921..1042 347..226 290 83.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22532967..22533269 206..508 1515 100 Plus
3R 32079331 3R 22533336..22533595 508..767 1300 100 Plus
3R 32079331 3R 22532718..22532906 19..207 945 100 Plus
3R 32079331 3R 22533684..22533767 766..849 420 100 Plus
3R 32079331 3R 22559611..22559879 209..477 415 77 Plus
3R 32079331 3R 7982865..7982954 226..315 285 87.8 Plus
3R 32079331 3R 9813349..9813433 475..391 215 83.5 Minus
3R 32079331 3R 9816469..9816540 391..462 210 86.1 Plus
3R 32079331 3R 4444113..4444219 209..315 205 79.4 Plus
3R 32079331 3R 22555689..22555773 303..219 185 81.2 Minus
Blast to na_te.dros performed 2015-02-12 03:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 814..889 206..130 121 65.4 Minus

BO09470.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:38 Download gff for BO09470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-PA 1..834 18..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:53 Download gff for BO09470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-PA 1..834 18..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:25 Download gff for BO09470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 312..1158 13..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:53 Download gff for BO09470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 312..1158 13..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:53 Download gff for BO09470.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22533336..22533593 508..765 100 <- Plus
3R 22533684..22533775 766..857 96   Plus
3R 22532710..22532906 13..207 98 <- Plus
3R 22532969..22533268 208..507 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:25 Download gff for BO09470.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18358432..18358628 13..207 98 <- Plus
arm_3R 18358691..18358990 208..507 100 <- Plus
arm_3R 18359058..18359315 508..765 100 <- Plus
arm_3R 18359406..18359497 766..857 96   Plus

BO09470.5prime Sequence

862 bp (801 high quality bases) assembled on 2006-01-23

> BO09470.5prime
GAAGTTATCAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTG
TTGACCGGATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAG
CAATGGTTCCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGC
CTACCTGTACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCA
AGCCCTTCGAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTG
CTCCTCAGCTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGG
CCACTACAACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTT
CCATGAGGATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACG
GAGCTGTTGGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGAT
CTCCTTCCTCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCA
TTGGGGTCAAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATT
AACTCCTTCATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGAT
GGGACCCAAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCC
TGCAGATTGTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAG
TTCCAGCCCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTT
CAATGCTGGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACT
ACAAGAAGGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAAAAAGGAGCAA
GCTTTCTAGACC

BO09470.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-PA 834 CG5326-RA 1..831 17..847 4155 100 Plus
CG5326-PB 372 CG5326-RB 1..342 17..358 1710 100 Plus
CG2781-PA 990 CG2781-RA 544..612 572..640 195 91.3 Plus
CG5278-PA 888 CG5278-RA 586..626 617..657 180 97.5 Plus
CG16904-PA 789 CG16904-RA 350..404 408..462 150 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-RA 1694 CG5326-RA 320..1150 17..847 4155 100 Plus
CG5278-RA 1722 CG5278-RA 526..804 389..667 420 77.6 Plus
CG2781-RA 1974 CG2781-RA 921..1042 519..640 290 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22532967..22533269 660..358 1515 100 Minus
3R 32079331 3R 22533336..22533595 358..99 1300 100 Minus
3R 32079331 3R 22532718..22532906 847..659 945 100 Minus
3R 32079331 3R 22533684..22533767 100..17 420 100 Minus
3R 32079331 3R 22559611..22559879 657..389 415 77 Minus
3R 32079331 3R 7982865..7982954 640..551 285 87.8 Minus
3R 32079331 3R 9813349..9813433 391..475 215 83.5 Plus
3R 32079331 3R 9816469..9816540 475..404 210 86.1 Minus
3R 32079331 3R 4444113..4444219 657..551 205 79.4 Minus
3R 32079331 3R 22555689..22555773 563..647 185 81.2 Plus
Blast to na_te.dros performed 2015-02-09 09:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 814..889 660..736 121 65.4 Plus

BO09470.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:39 Download gff for BO09470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-PA 1..834 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:54 Download gff for BO09470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-PA 1..834 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:21:41 Download gff for BO09470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 312..1150 9..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:51:14 Download gff for BO09470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 312..1150 9..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:51:14 Download gff for BO09470.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22532718..22532906 659..847 100 <- Minus
3R 22532969..22533268 359..658 100 <- Minus
3R 22533336..22533593 101..358 100 <- Minus
3R 22533684..22533775 9..100 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:21:41 Download gff for BO09470.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18358440..18358628 659..847 100 <- Minus
arm_3R 18358691..18358990 359..658 100 <- Minus
arm_3R 18359058..18359315 101..358 100 <- Minus
arm_3R 18359406..18359497 9..100 96   Minus

BO09470.complete Sequence

865 bp (865 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631507

> BO09470.complete
GAAGTTATCAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTG
TTGACCGGATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAG
CAATGGTTCCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGC
CTACCTGTACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCA
AGCCCTTCGAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTG
CTCCTCAGCTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGG
CCACTACAACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTT
CCATGAGGATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACG
GAGCTGTTGGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGAT
CTCCTTCCTCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCA
TTGGGGTCAAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATT
AACTCCTTCATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGAT
GGGACCCAAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCC
TGCAGATTGTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAG
TTCCAGCCCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTT
CAATGCTGGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACT
ACAAGAAGGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAAAAAGGAGGCA
AGCTTTCTAGACCAT

BO09470.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-RA 834 CG5326-PA 1..831 17..847 4155 100 Plus
CG5278-RA 888 CG5278-PA 358..636 389..667 420 76.7 Plus
CG2781-RA 990 CG2781-PA 523..612 551..640 285 87.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-RA 1694 CG5326-RA 320..1150 17..847 4155 100 Plus
CG5278-RA 1722 CG5278-RA 526..804 389..667 420 76.7 Plus
CG2781-RA 1974 CG2781-RA 953..1042 551..640 285 87.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22532967..22533269 660..358 1515 100 Minus
3R 32079331 3R 22533336..22533595 358..99 1300 100 Minus
3R 32079331 3R 22532718..22532906 847..659 945 100 Minus
3R 32079331 3R 22533684..22533767 100..17 420 100 Minus
3R 32079331 3R 22559611..22559879 657..389 415 77 Minus
3R 32079331 3R 7982865..7982954 640..551 285 87.8 Minus
3R 32079331 3R 9813349..9813433 391..475 215 83.5 Plus
3R 32079331 3R 9816469..9816540 475..404 210 86.1 Minus
3R 32079331 3R 4444113..4444219 657..551 205 79.4 Minus
3R 32079331 3R 22555689..22555773 563..647 185 81.2 Plus
Blast to na_te.dros performed 2014-11-27 10:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 814..889 660..736 121 65.4 Plus

BO09470.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:31 Download gff for BO09470.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 1..834 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:02 Download gff for BO09470.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 314..1160 9..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:33 Download gff for BO09470.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 320..1150 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:32 Download gff for BO09470.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 314..1160 9..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:59 Download gff for BO09470.complete
Subject Subject Range Query Range Percent Splice Strand
CG5326-RA 320..1150 17..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:59 Download gff for BO09470.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22532716..22532906 659..849 98 <- Minus
3R 22532969..22533268 359..658 100 <- Minus
3R 22533336..22533593 101..358 100 <- Minus
3R 22533684..22533767 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:33 Download gff for BO09470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18358438..18358628 659..849 98 <- Minus
arm_3R 18358691..18358990 359..658 100 <- Minus
arm_3R 18359058..18359315 101..358 100 <- Minus
arm_3R 18359406..18359489 17..100 100   Minus

BO09470.pep Sequence

Translation from 16 to 865

> BO09470.pep
MSVRLNETTTIVDRMVNFFVEHEDLRTKQWFLSNAPGPLFMILGAYLYFC
LYAGPRYMRDRKPFELKNTLLVYNAVQVLLSWVLFYEGYKGGWGGHYNFK
CQPVTYESDPISMRMARAVWLYYIAKITELLDTVFFVLRKKQRQISFLHL
YHHTLMPVCAFIGVKYFAGGHGTLLGFINSFIHIIMYAYYLLSAMGPKVQ
KYLWWKKYITILQIVQFLIIFVHTLQIQFQPNCNFPKSIAALLTFNAGLF
TYMFSAFYVANYKKEAAAQAKLAAKKEASFLDH

BO09470.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5326-PA 277 CG5326-PA 1..277 1..277 1477 100 Plus
CG31522-PH 364 CG31522-PH 8..258 12..263 702 48.4 Plus
CG31522-PG 364 CG31522-PG 8..258 12..263 702 48.4 Plus
CG31522-PA 364 CG31522-PA 8..258 12..263 702 48.4 Plus
CG5278-PA 295 CG5278-PA 7..267 10..273 701 51.5 Plus