Clone Sequence Records
BO09470.3prime Sequence
863 bp (862 high quality bases) assembled on 2006-01-23
> BO09470.3prime
ATGGTCTAGAAAGCTTGCCTCCTTTTTCGCCGCCAGCTTGGCCTGGGCAG
CCGCCTCCTTCTTGTAGTTGGCCACATAGAAGGCGCTGAACATATAGGTG
AAGAGTCCAGCATTGAAGGTCAGGAGTGCGGCAATGGACTTGGGGAAGTT
GCAGTTGGGCTGGAACTGGATTTGCAGTGTGTGCACGAAGATGATCAGGA
ATTGGACAATCTGCAGGATGGTGATGTACTTCTTCCACCACAGATACTTT
TGCACCTTGGGTCCCATCGCGGAGAGCAGGTAGTAGGCGTACATAATGAT
GTGGATGAAGGAGTTAATGAATCCCAGAAGGGTTCCATGGCCACCGGCAA
AGTACTTGACCCCAATGAAGGCACACACGGGCATCAGAGTGTGGTGGTAC
AAGTGGAGGAAGGAGATCTGGCGCTGTTTCTTGCGCAGCACAAAGAACAC
GGTGTCCAACAGCTCCGTGATCTTGGCAATGTAGTACAGCCACACGGCAC
GAGCCATCCTCATGGAAATCGGATCCGATTCGTAAGTCACCGGCTGGCAC
TTGAAGTTGTAGTGGCCACCCCAGCCGCCCTTGTATCCCTCGTAGAAGAG
CACCCAGCTGAGGAGCACTTGGACCGCATTGTAGACCAGGAGAGTGTTCT
TCAGCTCGAAGGGCTTGCGATCGCGCATGTAACGAGGTCCTGCGTACAGG
CAGAAGTACAGGTAGGCTCCAAGGATCATGAACAGCGGTCCGGGGGCATT
CGAAAGGAACCATTGCTTGGTGCGCAGATCCTCGTGCTCCACGAAGAAGT
TGACCATCCGGTCAACAATGGTCGTCGTCTCGTTCAGTCTGACCGACATG
TCGACTGATAACT
BO09470.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-PA | 834 | CG5326-RA | 1..831 | 849..19 | 4155 | 100 | Minus |
CG5326-PB | 372 | CG5326-RB | 1..342 | 849..508 | 1710 | 100 | Minus |
CG2781-PA | 990 | CG2781-RA | 544..612 | 294..226 | 195 | 91.3 | Minus |
CG5278-PA | 888 | CG5278-RA | 586..626 | 249..209 | 180 | 97.5 | Minus |
CG16904-PA | 789 | CG16904-RA | 350..404 | 458..404 | 150 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 1694 | CG5326-RA | 320..1150 | 849..19 | 4155 | 100 | Minus |
CG5278-RA | 1722 | CG5278-RA | 526..804 | 477..199 | 420 | 77.6 | Minus |
CG2781-RA | 1974 | CG2781-RA | 921..1042 | 347..226 | 290 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22532967..22533269 | 206..508 | 1515 | 100 | Plus |
3R | 32079331 | 3R | 22533336..22533595 | 508..767 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 22532718..22532906 | 19..207 | 945 | 100 | Plus |
3R | 32079331 | 3R | 22533684..22533767 | 766..849 | 420 | 100 | Plus |
3R | 32079331 | 3R | 22559611..22559879 | 209..477 | 415 | 77 | Plus |
3R | 32079331 | 3R | 7982865..7982954 | 226..315 | 285 | 87.8 | Plus |
3R | 32079331 | 3R | 9813349..9813433 | 475..391 | 215 | 83.5 | Minus |
3R | 32079331 | 3R | 9816469..9816540 | 391..462 | 210 | 86.1 | Plus |
3R | 32079331 | 3R | 4444113..4444219 | 209..315 | 205 | 79.4 | Plus |
3R | 32079331 | 3R | 22555689..22555773 | 303..219 | 185 | 81.2 | Minus |
Blast to na_te.dros performed 2015-02-12 03:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 814..889 | 206..130 | 121 | 65.4 | Minus |
BO09470.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:38 Download gff for
BO09470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-PA | 1..834 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:53 Download gff for
BO09470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-PA | 1..834 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:42:25 Download gff for
BO09470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1158 | 13..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:53 Download gff for
BO09470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1158 | 13..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:53 Download gff for
BO09470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22533336..22533593 | 508..765 | 100 | <- | Plus |
3R | 22533684..22533775 | 766..857 | 96 | | Plus |
3R | 22532710..22532906 | 13..207 | 98 | <- | Plus |
3R | 22532969..22533268 | 208..507 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:42:25 Download gff for
BO09470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18358432..18358628 | 13..207 | 98 | <- | Plus |
arm_3R | 18358691..18358990 | 208..507 | 100 | <- | Plus |
arm_3R | 18359058..18359315 | 508..765 | 100 | <- | Plus |
arm_3R | 18359406..18359497 | 766..857 | 96 | | Plus |
BO09470.5prime Sequence
862 bp (801 high quality bases) assembled on 2006-01-23
> BO09470.5prime
GAAGTTATCAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTG
TTGACCGGATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAG
CAATGGTTCCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGC
CTACCTGTACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCA
AGCCCTTCGAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTG
CTCCTCAGCTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGG
CCACTACAACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTT
CCATGAGGATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACG
GAGCTGTTGGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGAT
CTCCTTCCTCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCA
TTGGGGTCAAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATT
AACTCCTTCATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGAT
GGGACCCAAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCC
TGCAGATTGTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAG
TTCCAGCCCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTT
CAATGCTGGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACT
ACAAGAAGGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAAAAAGGAGCAA
GCTTTCTAGACC
BO09470.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-PA | 834 | CG5326-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
CG5326-PB | 372 | CG5326-RB | 1..342 | 17..358 | 1710 | 100 | Plus |
CG2781-PA | 990 | CG2781-RA | 544..612 | 572..640 | 195 | 91.3 | Plus |
CG5278-PA | 888 | CG5278-RA | 586..626 | 617..657 | 180 | 97.5 | Plus |
CG16904-PA | 789 | CG16904-RA | 350..404 | 408..462 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 1694 | CG5326-RA | 320..1150 | 17..847 | 4155 | 100 | Plus |
CG5278-RA | 1722 | CG5278-RA | 526..804 | 389..667 | 420 | 77.6 | Plus |
CG2781-RA | 1974 | CG2781-RA | 921..1042 | 519..640 | 290 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22532967..22533269 | 660..358 | 1515 | 100 | Minus |
3R | 32079331 | 3R | 22533336..22533595 | 358..99 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 22532718..22532906 | 847..659 | 945 | 100 | Minus |
3R | 32079331 | 3R | 22533684..22533767 | 100..17 | 420 | 100 | Minus |
3R | 32079331 | 3R | 22559611..22559879 | 657..389 | 415 | 77 | Minus |
3R | 32079331 | 3R | 7982865..7982954 | 640..551 | 285 | 87.8 | Minus |
3R | 32079331 | 3R | 9813349..9813433 | 391..475 | 215 | 83.5 | Plus |
3R | 32079331 | 3R | 9816469..9816540 | 475..404 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 4444113..4444219 | 657..551 | 205 | 79.4 | Minus |
3R | 32079331 | 3R | 22555689..22555773 | 563..647 | 185 | 81.2 | Plus |
Blast to na_te.dros performed 2015-02-09 09:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 814..889 | 660..736 | 121 | 65.4 | Plus |
BO09470.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:39 Download gff for
BO09470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-PA | 1..834 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:15:54 Download gff for
BO09470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-PA | 1..834 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:21:41 Download gff for
BO09470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1150 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:51:14 Download gff for
BO09470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 312..1150 | 9..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:51:14 Download gff for
BO09470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22532718..22532906 | 659..847 | 100 | <- | Minus |
3R | 22532969..22533268 | 359..658 | 100 | <- | Minus |
3R | 22533336..22533593 | 101..358 | 100 | <- | Minus |
3R | 22533684..22533775 | 9..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:21:41 Download gff for
BO09470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18358440..18358628 | 659..847 | 100 | <- | Minus |
arm_3R | 18358691..18358990 | 359..658 | 100 | <- | Minus |
arm_3R | 18359058..18359315 | 101..358 | 100 | <- | Minus |
arm_3R | 18359406..18359497 | 9..100 | 96 | | Minus |
BO09470.complete Sequence
865 bp (865 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631507
> BO09470.complete
GAAGTTATCAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTG
TTGACCGGATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAG
CAATGGTTCCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGC
CTACCTGTACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCA
AGCCCTTCGAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTG
CTCCTCAGCTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGG
CCACTACAACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTT
CCATGAGGATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACG
GAGCTGTTGGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGAT
CTCCTTCCTCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCA
TTGGGGTCAAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATT
AACTCCTTCATCCACATCATTATGTACGCCTACTACCTGCTCTCCGCGAT
GGGACCCAAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCC
TGCAGATTGTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAG
TTCCAGCCCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTT
CAATGCTGGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACT
ACAAGAAGGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAAAAAGGAGGCA
AGCTTTCTAGACCAT
BO09470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 834 | CG5326-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
CG5278-RA | 888 | CG5278-PA | 358..636 | 389..667 | 420 | 76.7 | Plus |
CG2781-RA | 990 | CG2781-PA | 523..612 | 551..640 | 285 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-RA | 1694 | CG5326-RA | 320..1150 | 17..847 | 4155 | 100 | Plus |
CG5278-RA | 1722 | CG5278-RA | 526..804 | 389..667 | 420 | 76.7 | Plus |
CG2781-RA | 1974 | CG2781-RA | 953..1042 | 551..640 | 285 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22532967..22533269 | 660..358 | 1515 | 100 | Minus |
3R | 32079331 | 3R | 22533336..22533595 | 358..99 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 22532718..22532906 | 847..659 | 945 | 100 | Minus |
3R | 32079331 | 3R | 22533684..22533767 | 100..17 | 420 | 100 | Minus |
3R | 32079331 | 3R | 22559611..22559879 | 657..389 | 415 | 77 | Minus |
3R | 32079331 | 3R | 7982865..7982954 | 640..551 | 285 | 87.8 | Minus |
3R | 32079331 | 3R | 9813349..9813433 | 391..475 | 215 | 83.5 | Plus |
3R | 32079331 | 3R | 9816469..9816540 | 475..404 | 210 | 86.1 | Minus |
3R | 32079331 | 3R | 4444113..4444219 | 657..551 | 205 | 79.4 | Minus |
3R | 32079331 | 3R | 22555689..22555773 | 563..647 | 185 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-27 10:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 814..889 | 660..736 | 121 | 65.4 | Plus |
BO09470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:31 Download gff for
BO09470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 1..834 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:02 Download gff for
BO09470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 314..1160 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:33 Download gff for
BO09470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 320..1150 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:32 Download gff for
BO09470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 314..1160 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:59 Download gff for
BO09470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5326-RA | 320..1150 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:59 Download gff for
BO09470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22532716..22532906 | 659..849 | 98 | <- | Minus |
3R | 22532969..22533268 | 359..658 | 100 | <- | Minus |
3R | 22533336..22533593 | 101..358 | 100 | <- | Minus |
3R | 22533684..22533767 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:33 Download gff for
BO09470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18358438..18358628 | 659..849 | 98 | <- | Minus |
arm_3R | 18358691..18358990 | 359..658 | 100 | <- | Minus |
arm_3R | 18359058..18359315 | 101..358 | 100 | <- | Minus |
arm_3R | 18359406..18359489 | 17..100 | 100 | | Minus |
BO09470.pep Sequence
Translation from 16 to 865
> BO09470.pep
MSVRLNETTTIVDRMVNFFVEHEDLRTKQWFLSNAPGPLFMILGAYLYFC
LYAGPRYMRDRKPFELKNTLLVYNAVQVLLSWVLFYEGYKGGWGGHYNFK
CQPVTYESDPISMRMARAVWLYYIAKITELLDTVFFVLRKKQRQISFLHL
YHHTLMPVCAFIGVKYFAGGHGTLLGFINSFIHIIMYAYYLLSAMGPKVQ
KYLWWKKYITILQIVQFLIIFVHTLQIQFQPNCNFPKSIAALLTFNAGLF
TYMFSAFYVANYKKEAAAQAKLAAKKEASFLDH
BO09470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5326-PA | 277 | CG5326-PA | 1..277 | 1..277 | 1477 | 100 | Plus |
CG31522-PH | 364 | CG31522-PH | 8..258 | 12..263 | 702 | 48.4 | Plus |
CG31522-PG | 364 | CG31522-PG | 8..258 | 12..263 | 702 | 48.4 | Plus |
CG31522-PA | 364 | CG31522-PA | 8..258 | 12..263 | 702 | 48.4 | Plus |
CG5278-PA | 295 | CG5278-PA | 7..267 | 10..273 | 701 | 51.5 | Plus |