Clone Sequence Records
BO09477.3prime Sequence
827 bp (768 high quality bases) assembled on 2006-01-23
> BO09477.3prime
ATGGTCTAGAAAGCTTGCATGGGCAACCTTGTGCGGCGGCGGCACAAGCA
GCTTCATCAGCTGCCCATAGTGATTCGGCGCTGTGCTATAGATGGTGCCC
GAGAAGCGGGTGCTGTCGTTCTTCTCGGCGGAAATCACTGTGCAACGGTT
CTGTTCCGAAAGCCGCATGTTTAGACCACGGAAGCGTGAGTCCAGCCTGT
ATAGATTAGCCCCTTCCCGTGGTAGAAAGAATGGACGTCCGCTAAACGGA
TTCATGAAGTCCGCCCAGTAGCCGTACGATAGCAGGCGATCGCACATCTC
CCGCGCTGCCAGGACAAACTTGGCAGCGCCCATTTCGATGTCTCCTTCGT
GGCTGAGAACAAGCATGGTGATGTTTATGCACTGCTGTGCGACGACGGGT
ACCGGGAAGATCTCCAAGAGTGGCACACGGATAAGCAGGGGACACTTACA
GCAGGTGAATTCCAGGCGCGATTTGTCCGTATTGGGACCCTTGTGAAAGT
TAACCAGGTGGCCAAGCGGCTCGAGCAGACCGACGGTGGTGCTGTCGCCC
TGCCAGGCGGGCCCAATGCCATTTGGCAGATAGAAGCGATTGCCTCTTTC
GGCGGTCAGTTCCCAGTTGGGCTCACTCTCCAAACTATTTAGCTCATCGT
CGTCGTCGAGATCCCGCGACTTGACGGTCTTAAAGTATCCGCCGGCATCC
GACGGTGGGCCATTTCGCTTGGAGTATCTAGCCACCGGAATGATGGCCGT
GTTGGTCACCTTGGTGCTCAGTAGGTCGTTCAGTCTGTTGGATCCGCGAT
GTACGGTATGTGAAATGGACAGGGATG
BO09477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-PA | 855 | CG12118-RA | 44..852 | 827..19 | 4045 | 100 | Minus |
CG12118-PB | 855 | CG12118-RB | 44..852 | 827..19 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-RB | 1260 | CG12118-RB | 280..1088 | 827..19 | 4045 | 100 | Minus |
CG12118-RA | 1277 | CG12118-RA | 297..1105 | 827..19 | 4045 | 100 | Minus |
CG12106-RA | 1372 | CG12106-RA | 961..1262 | 19..320 | 1510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9195551..9196059 | 319..827 | 2545 | 100 | Plus |
X | 23542271 | X | 9194922..9195223 | 19..320 | 1510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:40:07 has no hits.
BO09477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:52 Download gff for
BO09477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-PA | 44..855 | 16..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:14 Download gff for
BO09477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-PB | 44..855 | 16..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:18 Download gff for
BO09477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 297..1111 | 13..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:22 Download gff for
BO09477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 297..1111 | 13..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:22 Download gff for
BO09477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9194916..9195221 | 13..318 | 99 | <- | Plus |
X | 9195551..9196059 | 319..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:18 Download gff for
BO09477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9088949..9089254 | 13..318 | 99 | <- | Plus |
arm_X | 9089584..9090092 | 319..827 | 100 | | Plus |
BO09477.5prime Sequence
884 bp (806 high quality bases) assembled on 2006-01-23
> BO09477.5prime
GAAGTTATCAGTCGACATGTCTCGATCATTGAGTCGCGTATTGGGTACCA
TCTGGGCGCCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAAC
AGACTGAACGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCC
GGTGGCTAGATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGAT
ACTTTAAGACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAAT
AGTTTGGAGAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCG
CTTCTATCTGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCA
CCGTCGGTCTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGT
CCCAATACGGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCT
GCTTATCCGTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCAC
AGCAGTGCATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATC
GAAATGGGCGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCG
CCTGCTATCGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGAC
GTCCATTCTTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCA
CGCTTCCGTGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGT
GATTTCCGCCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATA
GCACAGCGCCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGCCGCCG
CCGCACAAGGTTGCCCATGCAAGCTTTCTAGACC
BO09477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-PA | 855 | CG12118-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG12118-PB | 855 | CG12118-RB | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-RB | 1260 | CG12118-RB | 237..1088 | 17..868 | 4260 | 100 | Plus |
CG12118-RA | 1277 | CG12118-RA | 254..1105 | 17..868 | 4260 | 100 | Plus |
CG12106-RA | 1372 | CG12106-RA | 961..1262 | 868..567 | 1510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9195551..9196102 | 568..17 | 2760 | 100 | Minus |
X | 23542271 | X | 9194922..9195223 | 868..567 | 1510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:03:55 has no hits.
BO09477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:53 Download gff for
BO09477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:15 Download gff for
BO09477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-PB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:22:37 Download gff for
BO09477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 254..1111 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:04 Download gff for
BO09477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 254..1111 | 17..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:04 Download gff for
BO09477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9194916..9195221 | 569..874 | 99 | <- | Minus |
X | 9195551..9196102 | 17..568 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:22:37 Download gff for
BO09477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9088949..9089254 | 569..874 | 99 | <- | Minus |
arm_X | 9089584..9090135 | 17..568 | 100 | | Minus |
BO09477.complete Sequence
886 bp (886 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631508
> BO09477.complete
GAAGTTATCAGTCGACATGTCTCGATCATTGAGTCGCGTATTGGGTACCA
TCTGGGCGCCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAAC
AGACTGAACGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCC
GGTGGCTAGATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGAT
ACTTTAAGACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAAT
AGTTTGGAGAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCG
CTTCTATCTGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCA
CCGTCGGTCTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGT
CCCAATACGGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCT
GCTTATCCGTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCAC
AGCAGTGCATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATC
GAAATGGGCGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCG
CCTGCTATCGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGAC
GTCCATTCTTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCA
CGCTTCCGTGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGT
GATTTCCGCCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATA
GCACAGCGCCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGCCGCCG
CCGCACAAGGTTGCCCATGCAAGCTTTCTAGACCAT
BO09477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-RB | 855 | CG12118-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
CG12118-RA | 855 | CG12118-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-RB | 1260 | CG12118-RB | 237..1088 | 17..868 | 4260 | 100 | Plus |
CG12118-RA | 1277 | CG12118-RA | 254..1105 | 17..868 | 4260 | 100 | Plus |
CG12106-RA | 1372 | CG12106-RA | 961..1262 | 868..567 | 1510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9195551..9196102 | 568..17 | 2760 | 100 | Minus |
X | 23542271 | X | 9194922..9195223 | 868..567 | 1510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:14:21 has no hits.
BO09477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:14 Download gff for
BO09477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:45 Download gff for
BO09477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RB | 284..1141 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:51 Download gff for
BO09477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 254..1105 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:14 Download gff for
BO09477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RB | 284..1141 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:45 Download gff for
BO09477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12118-RA | 254..1105 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:45 Download gff for
BO09477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9194918..9195221 | 569..870 | 99 | <- | Minus |
X | 9195551..9196102 | 17..568 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:51 Download gff for
BO09477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9088951..9089254 | 569..870 | 99 | <- | Minus |
arm_X | 9089584..9090135 | 17..568 | 100 | | Minus |
BO09477.pep Sequence
Translation from 16 to 886
> BO09477.pep
MSRSLSRVLGTIWAPSLSISHTVHRGSNRLNDLLSTKVTNTAIIPVARYS
KRNGPPSDAGGYFKTVKSRDLDDDDELNSLESEPNWELTAERGNRFYLPN
GIGPAWQGDSTTVGLLEPLGHLVNFHKGPNTDKSRLEFTCCKCPLLIRVP
LLEIFPVPVVAQQCINITMLVLSHEGDIEMGAAKFVLAAREMCDRLLSYG
YWADFMNPFSGRPFFLPREGANLYRLDSRFRGLNMRLSEQNRCTVISAEK
NDSTRFSGTIYSTAPNHYGQLMKLLVPPPHKVAHASFLDH
BO09477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12118-PB | 284 | CG12118-PB | 1..284 | 1..284 | 1510 | 100 | Plus |
CG12118-PA | 284 | CG12118-PA | 1..284 | 1..284 | 1510 | 100 | Plus |