Clone BO09477 Report

Search the DGRC for BO09477

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG12118-RA
Protein status:BO09477.pep: validated full length
Sequenced Size:886

Clone Sequence Records

BO09477.3prime Sequence

827 bp (768 high quality bases) assembled on 2006-01-23

> BO09477.3prime
ATGGTCTAGAAAGCTTGCATGGGCAACCTTGTGCGGCGGCGGCACAAGCA
GCTTCATCAGCTGCCCATAGTGATTCGGCGCTGTGCTATAGATGGTGCCC
GAGAAGCGGGTGCTGTCGTTCTTCTCGGCGGAAATCACTGTGCAACGGTT
CTGTTCCGAAAGCCGCATGTTTAGACCACGGAAGCGTGAGTCCAGCCTGT
ATAGATTAGCCCCTTCCCGTGGTAGAAAGAATGGACGTCCGCTAAACGGA
TTCATGAAGTCCGCCCAGTAGCCGTACGATAGCAGGCGATCGCACATCTC
CCGCGCTGCCAGGACAAACTTGGCAGCGCCCATTTCGATGTCTCCTTCGT
GGCTGAGAACAAGCATGGTGATGTTTATGCACTGCTGTGCGACGACGGGT
ACCGGGAAGATCTCCAAGAGTGGCACACGGATAAGCAGGGGACACTTACA
GCAGGTGAATTCCAGGCGCGATTTGTCCGTATTGGGACCCTTGTGAAAGT
TAACCAGGTGGCCAAGCGGCTCGAGCAGACCGACGGTGGTGCTGTCGCCC
TGCCAGGCGGGCCCAATGCCATTTGGCAGATAGAAGCGATTGCCTCTTTC
GGCGGTCAGTTCCCAGTTGGGCTCACTCTCCAAACTATTTAGCTCATCGT
CGTCGTCGAGATCCCGCGACTTGACGGTCTTAAAGTATCCGCCGGCATCC
GACGGTGGGCCATTTCGCTTGGAGTATCTAGCCACCGGAATGATGGCCGT
GTTGGTCACCTTGGTGCTCAGTAGGTCGTTCAGTCTGTTGGATCCGCGAT
GTACGGTATGTGAAATGGACAGGGATG

BO09477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-PA 855 CG12118-RA 44..852 827..19 4045 100 Minus
CG12118-PB 855 CG12118-RB 44..852 827..19 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RB 1260 CG12118-RB 280..1088 827..19 4045 100 Minus
CG12118-RA 1277 CG12118-RA 297..1105 827..19 4045 100 Minus
CG12106-RA 1372 CG12106-RA 961..1262 19..320 1510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9195551..9196059 319..827 2545 100 Plus
X 23542271 X 9194922..9195223 19..320 1510 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:40:07 has no hits.

BO09477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:52 Download gff for BO09477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-PA 44..855 16..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:14 Download gff for BO09477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-PB 44..855 16..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:18 Download gff for BO09477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 297..1111 13..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:22 Download gff for BO09477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 297..1111 13..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:22 Download gff for BO09477.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9194916..9195221 13..318 99 <- Plus
X 9195551..9196059 319..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:18 Download gff for BO09477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9088949..9089254 13..318 99 <- Plus
arm_X 9089584..9090092 319..827 100   Plus

BO09477.5prime Sequence

884 bp (806 high quality bases) assembled on 2006-01-23

> BO09477.5prime
GAAGTTATCAGTCGACATGTCTCGATCATTGAGTCGCGTATTGGGTACCA
TCTGGGCGCCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAAC
AGACTGAACGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCC
GGTGGCTAGATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGAT
ACTTTAAGACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAAT
AGTTTGGAGAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCG
CTTCTATCTGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCA
CCGTCGGTCTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGT
CCCAATACGGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCT
GCTTATCCGTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCAC
AGCAGTGCATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATC
GAAATGGGCGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCG
CCTGCTATCGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGAC
GTCCATTCTTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCA
CGCTTCCGTGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGT
GATTTCCGCCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATA
GCACAGCGCCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGCCGCCG
CCGCACAAGGTTGCCCATGCAAGCTTTCTAGACC

BO09477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-PA 855 CG12118-RA 1..852 17..868 4260 100 Plus
CG12118-PB 855 CG12118-RB 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RB 1260 CG12118-RB 237..1088 17..868 4260 100 Plus
CG12118-RA 1277 CG12118-RA 254..1105 17..868 4260 100 Plus
CG12106-RA 1372 CG12106-RA 961..1262 868..567 1510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9195551..9196102 568..17 2760 100 Minus
X 23542271 X 9194922..9195223 868..567 1510 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:03:55 has no hits.

BO09477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:53 Download gff for BO09477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:15 Download gff for BO09477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-PB 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:22:37 Download gff for BO09477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 254..1111 17..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:04 Download gff for BO09477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 254..1111 17..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:04 Download gff for BO09477.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9194916..9195221 569..874 99 <- Minus
X 9195551..9196102 17..568 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:22:37 Download gff for BO09477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9088949..9089254 569..874 99 <- Minus
arm_X 9089584..9090135 17..568 100   Minus

BO09477.complete Sequence

886 bp (886 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631508

> BO09477.complete
GAAGTTATCAGTCGACATGTCTCGATCATTGAGTCGCGTATTGGGTACCA
TCTGGGCGCCATCCCTGTCCATTTCACATACCGTACATCGCGGATCCAAC
AGACTGAACGACCTACTGAGCACCAAGGTGACCAACACGGCCATCATTCC
GGTGGCTAGATACTCCAAGCGAAATGGCCCACCGTCGGATGCCGGCGGAT
ACTTTAAGACCGTCAAGTCGCGGGATCTCGACGACGACGATGAGCTAAAT
AGTTTGGAGAGTGAGCCCAACTGGGAACTGACCGCCGAAAGAGGCAATCG
CTTCTATCTGCCAAATGGCATTGGGCCCGCCTGGCAGGGCGACAGCACCA
CCGTCGGTCTGCTCGAGCCGCTTGGCCACCTGGTTAACTTTCACAAGGGT
CCCAATACGGACAAATCGCGCCTGGAATTCACCTGCTGTAAGTGTCCCCT
GCTTATCCGTGTGCCACTCTTGGAGATCTTCCCGGTACCCGTCGTCGCAC
AGCAGTGCATAAACATCACCATGCTTGTTCTCAGCCACGAAGGAGACATC
GAAATGGGCGCTGCCAAGTTTGTCCTGGCAGCGCGGGAGATGTGCGATCG
CCTGCTATCGTACGGCTACTGGGCGGACTTCATGAATCCGTTTAGCGGAC
GTCCATTCTTTCTACCACGGGAAGGGGCTAATCTATACAGGCTGGACTCA
CGCTTCCGTGGTCTAAACATGCGGCTTTCGGAACAGAACCGTTGCACAGT
GATTTCCGCCGAGAAGAACGACAGCACCCGCTTCTCGGGCACCATCTATA
GCACAGCGCCGAATCACTATGGGCAGCTGATGAAGCTGCTTGTGCCGCCG
CCGCACAAGGTTGCCCATGCAAGCTTTCTAGACCAT

BO09477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RB 855 CG12118-PB 1..852 17..868 4260 100 Plus
CG12118-RA 855 CG12118-PA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-RB 1260 CG12118-RB 237..1088 17..868 4260 100 Plus
CG12118-RA 1277 CG12118-RA 254..1105 17..868 4260 100 Plus
CG12106-RA 1372 CG12106-RA 961..1262 868..567 1510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9195551..9196102 568..17 2760 100 Minus
X 23542271 X 9194922..9195223 868..567 1510 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:14:21 has no hits.

BO09477.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:14 Download gff for BO09477.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RB 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:45 Download gff for BO09477.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RB 284..1141 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:51 Download gff for BO09477.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 254..1105 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:14 Download gff for BO09477.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RB 284..1141 17..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:45 Download gff for BO09477.complete
Subject Subject Range Query Range Percent Splice Strand
CG12118-RA 254..1105 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:45 Download gff for BO09477.complete
Subject Subject Range Query Range Percent Splice Strand
X 9194918..9195221 569..870 99 <- Minus
X 9195551..9196102 17..568 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:51 Download gff for BO09477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9088951..9089254 569..870 99 <- Minus
arm_X 9089584..9090135 17..568 100   Minus

BO09477.pep Sequence

Translation from 16 to 886

> BO09477.pep
MSRSLSRVLGTIWAPSLSISHTVHRGSNRLNDLLSTKVTNTAIIPVARYS
KRNGPPSDAGGYFKTVKSRDLDDDDELNSLESEPNWELTAERGNRFYLPN
GIGPAWQGDSTTVGLLEPLGHLVNFHKGPNTDKSRLEFTCCKCPLLIRVP
LLEIFPVPVVAQQCINITMLVLSHEGDIEMGAAKFVLAAREMCDRLLSYG
YWADFMNPFSGRPFFLPREGANLYRLDSRFRGLNMRLSEQNRCTVISAEK
NDSTRFSGTIYSTAPNHYGQLMKLLVPPPHKVAHASFLDH

BO09477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12118-PB 284 CG12118-PB 1..284 1..284 1510 100 Plus
CG12118-PA 284 CG12118-PA 1..284 1..284 1510 100 Plus