Clone Sequence Records
BO09478.3prime Sequence
938 bp (816 high quality bases) assembled on 2006-01-23
> BO09478.3prime
ATGGTCTAGAAAGCTTGCATCCTGCTTCTTTTGTGCAGCTGTCTTTTTGA
TCGCTGGCGCAGCCTGGGGACCTTCGATGGCTCCATTGGCTGTCTTGCCC
TCCAGCTTCTGGGCGGCATGCTGCTGCTCCATCTCCCCGGAGAAGCCGAA
CTCATTCACGCGCTTCAAATCGACGCGATACTGCCAGCGCTGGTAGAGGA
ACACAAAGAAGATGATGTCGTCGCGGAAGCAACCCAACCGGTACATTGTG
GGCATTTTGATCACAAACGCAAAGATGTCATCGATAAAGGTGTTGAGGAA
CTTGTAGGTCATCATGCGCCACGGCATGTGGGCCACCGACTTTAGCTTGT
AGTTGATGAATAGCTGCGGCGTCATCAGGATGAAGCCAAAGGTCAGCAGA
TAGCCGTACAGCATGTTGAGCACAAATGAGTACCAGCCCTTGTGCTCGTT
GTAGATCAACGAGTAGACAAAGTAGGCCACCAGGAGCGGGAAGCATGCCC
AGCCCAGGTACTTGAAGGCCAGTTTGTCATAGTCTTTGGTCGAGCTCTCC
GAATAGGAGCCCTTGTCCTGGAAACTGATTCTCGGCAGCACTCCCAGAAT
CTTTTGATCGTGATCGTAGTTGATATCCACGACCTTGTGAATCTTCCACA
CCTCGATTCCCAGTCCCACGAAACAGGAGATGCGAATCATGAAGTTGGTC
TCGTTGTCCAGCACGTACAGCAGGATGATTAGTGACTGGAAGACACCGAA
GAACACCGATCGTACAGACAGTCCTTCGAGCGACTTGCGATTGTTCCAGA
ACTGAATGTCGTTCTTGAAGGCCAGCAGTTCGAACACCGAATGCAGTATG
GAAACGGCCACTGTGATGCCCAGCAGGTAGATATTGGTGTCCAGCAGAGT
CTCCTTCAGCGAGTCCTGATCCTCGTCACTCTCCCTCG
BO09478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-PA | 1926 | CG3702-RA | 1008..1923 | 934..19 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 2252 | CG3702-RB | 1100..2015 | 934..19 | 4580 | 100 | Minus |
| CG3702-RA | 2369 | CG3702-RA | 1217..2132 | 934..19 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4224887..4225802 | 19..934 | 4580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:17:45 has no hits.
BO09478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:54 Download gff for
BO09478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 1004..1926 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:16 Download gff for
BO09478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 1004..1926 | 18..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:21 Download gff for
BO09478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 1213..2132 | 19..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:32 Download gff for
BO09478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 1213..2132 | 19..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:32 Download gff for
BO09478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4224887..4225804 | 19..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:21 Download gff for
BO09478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4224887..4225804 | 19..938 | 99 | | Plus |
BO09478.5prime Sequence
793 bp (792 high quality bases) assembled on 2006-01-23
> BO09478.5prime
GAAGTTATCAGTCGACATGTCGAAAGCAGGCGAAGATCAGCCCGCAGCAG
AGGGTGCGGTGATTGCGGGCAATGGTAACGCTGAGCTGGCCCAAAATGAA
GGCCAGAATGAGCAACAACAACCCCCGCCGAATCAGCCCACCCGCATGGA
GTCCTTCTTTGCGATGACCAAGTCCCTCATCCTGCGTGCCCTGATCATCT
ACTTTGTGAGCTCCTTTTTCCGACGACCTGCGCCCGATGCCGCCAGTCAA
GGCAAAAGTGTCGCTAATGCGGGTCCCAAGATCACGGCCTGGAATTACTT
CGAGAACGGCACGGACTTTGACCTGCACGTGTGGTTGTCGGAGAATCCCG
ATGTGGTTAACTTCCAGCAAAAGGCGAATCTCCTCTGGCTACAGAAGGAC
CTCACCTATGGCGATTGGACGTCGGGCGTCAACGGAGATGGCATTTACAC
GCACAGTTTGAAGCTTAAGACCAGCCAGCATCTGATGAACAATGGCAGTG
TGTACCTACATGCCTTTGTCACGCGTACCGGCATGAGTCCCGATCCCAAA
GCCCCGAATTACGCCACCAAAATGGGCCACCAGCAACATCAGCTGAACAA
GTTCAAGAAGTTGCGTGTGAACCGCAACTACAACTTGCTGGCCAGCGAGA
AGGAGAAGTTGGAGCACGAGCTCAAGCATGCGAATCTCAAGGATACCATC
GTGTCTCACTGGCATCCTAATCTCACGGTCAATCTCGTAGTGGACCAAAC
TAACTGGGCCGAGGGATCTGTGCCGCCGCCACTGGATGACTAC
BO09478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-PA | 1926 | CG3702-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 2252 | CG3702-RB | 92..869 | 16..793 | 3890 | 100 | Plus |
| CG3702-RA | 2369 | CG3702-RA | 209..986 | 16..793 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4226033..4226768 | 793..58 | 3680 | 100 | Minus |
| 2L | 23513712 | 2L | 4226845..4226889 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:01:30 has no hits.
BO09478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:54 Download gff for
BO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:18 Download gff for
BO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:43 Download gff for
BO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..986 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:12 Download gff for
BO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..986 | 9..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:12 Download gff for
BO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4226033..4226767 | 59..793 | 100 | <- | Minus |
| 2L | 4226847..4226894 | 9..58 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:43 Download gff for
BO09478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4226033..4226767 | 59..793 | 100 | <- | Minus |
| arm_2L | 4226847..4226894 | 9..58 | 94 | | Minus |
BO09478.complete Sequence
1957 bp (1957 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631509
> BO09478.complete
GAAGTTATCAGTCGACATGTCGAAAGCAGGCGAAGATCAGCCCGCAGCAG
AGGGTGCGGTGATTGCGGGCAATGGTAACGCTGAGCTGGCCCAAAATGAA
GGCCAGAATGAGCAACAACAACCCCCGCCGAATCAGCCCACCCGCATGGA
GTCCTTCTTTGCGATGACCAAGTCCCTCATCCTGCGTGCCCTGATCATCT
ACTTTGTGAGCTCCTTTTTCCGACGACCTGCGCCCGATGCCGCCAGTCAA
GGCAAAAGTGTCGCTAATGCGGGTCCCAAGATCACGGCCTGGAATTACTT
CGAGAACGGCACGGACTTTGACCTGCACGTGTGGTTGTCGGAGAATCCCG
ATGTGGTTAACTTCCAGCAAAAGGCGAATCTCCTCTGGCTACAGAAGGAC
CTCACCTATGGCGATTGGACGTCGGGCGTCAACGGAGATGGCATTTACAC
GCACAGTTTGAAGCTTAAGACCAGCCAGCATCTGATGAACAATGGCAGTG
TGTACCTACATGCCTTTGTCACGCGTACCGGCATGAGTCCCGATCCCAAA
GCCCCGAATTACGCCACCAAAATGGGCCACCAGCAACATCAGCTGAACAA
GTTCAAGAAGTTGCGTGTGAACCGCAACTACAACTTGCTGGCCAGCGAGA
AGGAGAAGTTGGAGCACGAGCTCAAGCATGCGAATCTCAAGGATACCATC
GTGTCTCACTGGCATCCTAATCTCACGGTCAATCTCGTAGTGGACCAAAC
TAACTGGGCCGAGGGATCTGTGCCGCCGCCACTGGATGACTACGTAAAGT
TCGTAGACGGCGGTAAGACCTATCTGCCCATCCTGTTCGTCAACGACTAC
TGGAATCTTCAGCGGGAGTATCAACCCATTAATGAGACCACTCCCGAACT
GGAGCTGCACCTCACTTTCCAGCCGCTGGGCATGTTCAAGTGGCAGCTGT
ATGCCGCCAAACAGATGAAGAACAAGTGGGCTGGCAATATGCTCGGTGAG
CTGATGGCCGCCAGCCAGCCGGAGGAGAGTGACGAGGATCAGGACTCGCT
GAAGGAGACTCTGCTGGACACCAATATCTACCTGCTGGGCATCACAGTGG
CCGTTTCCATACTGCATTCGGTGTTCGAACTGCTGGCCTTCAAGAACGAC
ATTCAGTTCTGGAACAATCGCAAGTCGCTCGAAGGACTGTCTGTACGATC
GGTGTTCTTCGGTGTCTTCCAGTCACTAATCATCCTGCTGTACGTGCTGG
ACAACGAGACCAACTTCATGATTCGCATCTCCTGTTTCGTGGGACTGGGA
ATCGAGGTGTGGAAGATTCACAAGGTCGTGGATATCAACTACGATCACGA
TCAAAAGATTCTGGGAGTGCTGCCGAGAATCAGTTTCCAGGACAAGGGCT
CCTATTCGGAGAGCTCGACCAAAGACTATGACAAACTGGCCTTCAAGTAC
CTGGGCTGGGCATGCTTCCCGCTCCTGGTGGCCTACTTTGTCTACTCGTT
GATCTACAACGAGCACAAGGGCTGGTACTCATTTGTGCTCAACATGCTGT
ACGGCTATCTGCTGACCTTTGGCTTCATCCTGATGACGCCGCAGCTATTC
ATCAACTACAAGCTAAAGTCGGTGGCCCACATGCCGTGGCGCATGATGAC
CTACAAGTTCCTCAACACCTTTATCGATGACATCTTTGCGTTTGTGATCA
AAATGCCCACAATGTACCGGTTGGGTTGCTTCCGCGACGACATCATCTTC
TTTGTGTTCCTCTACCAGCGCTGGCAGTATCGCGTCGATTTGAAGCGCGT
GAATGAGTTCGGCTTCTCCGGGGAGATGGAGCAGCAGCATGCCGCCCAGA
AGCTGGAGGGCAAGACAGCCAATGGAGCCATCGAAGGTCCCCAGGCTGCG
CCAGCGATCAAAAAGACAGCTGCACAAAAGAAGCAGGATGCAAGCTTTCT
AGACCAT
BO09478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 1926 | CG3702-PB | 1..1923 | 17..1939 | 9615 | 100 | Plus |
| CG3702-RA | 1926 | CG3702-PA | 1..1923 | 17..1939 | 9615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-RB | 2252 | CG3702-RB | 92..2015 | 16..1939 | 9620 | 100 | Plus |
| CG3702-RA | 2369 | CG3702-RA | 209..2132 | 16..1939 | 9620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4224887..4226768 | 1939..58 | 9410 | 100 | Minus |
| 2L | 23513712 | 2L | 4226845..4226889 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:06:26 has no hits.
BO09478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:47 Download gff for
BO09478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 1..1926 | 17..1940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:32 Download gff for
BO09478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..2132 | 9..1939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:29 Download gff for
BO09478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 210..2132 | 17..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:47 Download gff for
BO09478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 204..2132 | 9..1939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:30 Download gff for
BO09478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3702-RA | 210..2132 | 17..1941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:30 Download gff for
BO09478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4224885..4226767 | 59..1941 | 99 | <- | Minus |
| 2L | 4226847..4226888 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:29 Download gff for
BO09478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4224885..4226767 | 59..1941 | 99 | <- | Minus |
| arm_2L | 4226847..4226888 | 17..58 | 100 | | Minus |
BO09478.pep Sequence
Translation from 16 to 1957
> BO09478.pep
MSKAGEDQPAAEGAVIAGNGNAELAQNEGQNEQQQPPPNQPTRMESFFAM
TKSLILRALIIYFVSSFFRRPAPDAASQGKSVANAGPKITAWNYFENGTD
FDLHVWLSENPDVVNFQQKANLLWLQKDLTYGDWTSGVNGDGIYTHSLKL
KTSQHLMNNGSVYLHAFVTRTGMSPDPKAPNYATKMGHQQHQLNKFKKLR
VNRNYNLLASEKEKLEHELKHANLKDTIVSHWHPNLTVNLVVDQTNWAEG
SVPPPLDDYVKFVDGGKTYLPILFVNDYWNLQREYQPINETTPELELHLT
FQPLGMFKWQLYAAKQMKNKWAGNMLGELMAASQPEESDEDQDSLKETLL
DTNIYLLGITVAVSILHSVFELLAFKNDIQFWNNRKSLEGLSVRSVFFGV
FQSLIILLYVLDNETNFMIRISCFVGLGIEVWKIHKVVDINYDHDQKILG
VLPRISFQDKGSYSESSTKDYDKLAFKYLGWACFPLLVAYFVYSLIYNEH
KGWYSFVLNMLYGYLLTFGFILMTPQLFINYKLKSVAHMPWRMMTYKFLN
TFIDDIFAFVIKMPTMYRLGCFRDDIIFFVFLYQRWQYRVDLKRVNEFGF
SGEMEQQHAAQKLEGKTANGAIEGPQAAPAIKKTAAQKKQDASFLDH
BO09478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3702-PB | 641 | CG3702-PB | 1..641 | 1..641 | 3408 | 100 | Plus |
| CG3702-PA | 641 | CG3702-PA | 1..641 | 1..641 | 3408 | 100 | Plus |
| CG4332-PA | 562 | CG4332-PA | 79..535 | 141..596 | 662 | 31.6 | Plus |
