Clone BO09479 Report

Search the DGRC for BO09479

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG9701-RA
Protein status:BO09479.pep: validated full length
Sequenced Size:1657

Clone Sequence Records

BO09479.3prime Sequence

861 bp (844 high quality bases) assembled on 2006-01-23

> BO09479.3prime
ATGGTCTAGAAAGCTTGCTCTAAGCAGAGCCAGCAGTAGAATGCCCATCA
GACTCCAACTGACAGCACCGCTAGCACCACTTGTCCTGGCTTCCGCCGGC
AGCTGAGCCATGGCCACCAGCTGCTGCTCCTCATCCAGCTTGGGTCTGTA
GCTCCAATCGATGGTGTTTGTCTTGCAGAGCTGGGCGAATACTCTCGCCG
AGATCTTGGGCGTTCTGGTGCGTTGCGGTGAGTTGAAGTCCACATGATAG
AGACCGAATTTCTCCGAGAAGCCTGCCTTCCACTCATAGCTGTCCATCAG
ACTCCAGGCGATGTAGCCACTGATATTCGCTCCATCCTCCATGGCATCCA
GAACCGCCGACAGATAGAGATTGTAGTAGTCCACGCGGGCATAGTCCTCC
AGACCACCGCGATCACTGACTCCGTTCTCCGTAACGATTATCTCGGGCGC
ATTGTACTCCCGGTGTATCCACATCAACAGATTGTACATTCCCTTGGGAT
AGACCTTGAGCCAAACGGATCCGGAACCGGGCCAATCGACGCCCTCCTGG
CTCTCGACCACGCCCATGTCGTGATTAAAGGATGGAACTGGAAACTTGCC
GGTATTATTGTGACCATTGGAGGTGACCAGGTTGCTGGTATAGGAATTGA
TGCCGAAGAAGTCGGAGGTGCCGCGTATGCGATGAATCTCCTCAGTGGTG
AACTCAGGCAGTCTGGATCGTGCTCCGAAACCCTGCTCCTTGCTCAAGTT
CCGAATGCGCTCGATCATCACCTTGGGATAGTTACCGTGCTTGGAAAAGA
TGGGATGACCGAACCAGCCTACATAGAACTGCATGGCTCGCTCGGAGGCC
TCACGATCCTC

BO09479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-PA 1626 CG9701-RA 781..1623 861..19 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 2005 CG9701-RA 995..1837 861..19 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16738709..16739196 506..19 2440 100 Minus
3L 28110227 3L 16737762..16738120 861..503 1795 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:55:28 has no hits.

BO09479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:55 Download gff for BO09479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-PA 781..1626 15..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:19 Download gff for BO09479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-PA 781..1626 15..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:16:47 Download gff for BO09479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 995..1841 14..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:34 Download gff for BO09479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 995..1841 14..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:34 Download gff for BO09479.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16737762..16738118 505..861 100 -> Minus
3L 16738711..16739200 14..504 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:16:47 Download gff for BO09479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16730862..16731218 505..861 100 -> Minus
arm_3L 16731811..16732300 14..504 99   Minus

BO09479.5prime Sequence

903 bp (794 high quality bases) assembled on 2006-01-23

> BO09479.5prime
GAAGTTATCAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGA
CTGCCTCATGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAAC
GACTTTCTCTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTG
GAACGCGGATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTC
ATCCCGAGAAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGC
TATCATCAGTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGG
CACCTATCGCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATA
TGAACCACGTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGAC
GAACTGCTGCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGA
ATTGCCGCAGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAA
TTCCGCTTTTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGAT
CGGGTGAAGATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCA
CGGTTACGGAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTC
CCGCCTACCTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTG
CACATGTACCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCAT
CACACTGGATACGTCGTGGCCAGAGCCCAGGGATCCCAACTCCGCCGAGG
ATCGTGAGGCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGT
CATCCCATCTTTTCCAGCACGGTAACTATCCCAAGGTGATGATCGAGCGC
ATT

BO09479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-PA 1626 CG9701-RA 1..850 17..866 4250 100 Plus
CG9701-PA 1626 CG9701-RA 851..888 866..903 190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 2005 CG9701-RA 213..1102 15..903 4425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16737222..16737869 257..903 3190 99.8 Plus
3L 28110227 3L 16734422..16734623 58..259 1010 100 Plus
3L 28110227 3L 16733758..16733800 15..57 215 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:12:03 has no hits.

BO09479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:56 Download gff for BO09479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-PA 1..888 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:20 Download gff for BO09479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-PA 1..888 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:21 Download gff for BO09479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 213..1102 15..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:45:18 Download gff for BO09479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 213..1102 15..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:45:18 Download gff for BO09479.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16734422..16734623 58..259 100 -> Plus
3L 16733758..16733800 15..57 100 -> Plus
3L 16737225..16737869 260..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:21 Download gff for BO09479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16726858..16726900 15..57 100 -> Plus
arm_3L 16727522..16727723 58..259 100 -> Plus
arm_3L 16730325..16730969 260..903 99   Plus

BO09479.complete Sequence

1657 bp (1657 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631510

> BO09479.complete
GAAGTTATCAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGA
CTGCCTCATGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAAC
GACTTTCTCTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTG
GAACGCGGATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTC
ATCCCGAGAAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGC
TATCATCAGTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGG
CACCTATCGCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATA
TGAACCACGTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGAC
GAACTGCTGCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGA
ATTGCCGCAGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAA
TTCCGCTTTTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGAT
CGGGTGAAGATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCA
CGGTTACGGAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTC
CCGCCTACCTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTG
CACATGTACCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCAT
CACACTGGATACGTCGTGGCCAGAGCCCAGGGATCCCAACTCCGCCGAGG
ATCGTGAGGCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGT
CATCCCATCTTTTCCAAGCACGGTAACTATCCCAAGGTGATGATCGAGCG
CATTCGGAACTTGAGCAAGGAGCAGGGTTTCGGAGCACGATCCAGACTGC
CTGAGTTCACCACTGAGGAGATTCATCGCATACGCGGCACCTCCGACTTC
TTCGGCATCAATTCCTATACCAGCAACCTGGTCACCTCCAATGGTCACAA
TAATACCGGCAAGTTTCCAGTTCCATCCTTTAATCACGACATGGGCGTGG
TCGAGAGCCAGGAGGGCGTCGATTGGCCCGGTTCCGGATCCGTTTGGCTC
AAGGTCTATCCCAAGGGAATGTACAATCTGTTGATGTGGATACACCGGGA
GTACAATGCGCCCGAGATAATCGTTACGGAGAACGGAGTCAGTGATCGCG
GTGGTCTGGAGGACTATGCCCGCGTGGACTACTACAATCTCTATCTGTCG
GCGGTTCTGGATGCCATGGAGGATGGAGCGAATATCAGTGGCTACATCGC
CTGGAGTCTGATGGACAGCTATGAGTGGAAGGCAGGCTTCTCGGAGAAAT
TCGGTCTCTATCATGTGGACTTCAACTCACCGCAACGCACCAGAACGCCC
AAGATCTCGGCGAGAGTATTCGCCCAGCTCTGCAAGACAAACACCATCGA
TTGGAGCTACAGACCCAAGCTGGATGAGGAGCAGCAGCTGGTGGCCATGG
CTCAGCTGCCGGCGGAAGCCAGGACAAGTGGTGCTAGCGGTGCTGTCAGT
TGGAGTCTGATGGGCATTCTACTGCTGGCTCTGCTTAGAGCAAGCTTTCT
AGACCAT

BO09479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 1626 CG9701-PA 1..1623 17..1639 8115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-RA 2005 CG9701-RA 213..1837 15..1639 8125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16737222..16738120 257..1155 4495 100 Plus
3L 28110227 3L 16738709..16739196 1152..1639 2440 100 Plus
3L 28110227 3L 16734422..16734623 58..259 1010 100 Plus
3L 28110227 3L 16733758..16733800 15..57 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:07:28 has no hits.

BO09479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:15 Download gff for BO09479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 1..1626 17..1643 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:46 Download gff for BO09479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 185..1813 15..1644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:55:49 Download gff for BO09479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 215..1837 17..1641 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:15 Download gff for BO09479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 185..1813 15..1644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:24 Download gff for BO09479.complete
Subject Subject Range Query Range Percent Splice Strand
CG9701-RA 215..1837 17..1641 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:24 Download gff for BO09479.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16733760..16733800 17..57 100 -> Plus
3L 16734422..16734623 58..259 100 -> Plus
3L 16737225..16738118 260..1153 100 -> Plus
3L 16738711..16739196 1154..1641 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:55:49 Download gff for BO09479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16726860..16726900 17..57 100 -> Plus
arm_3L 16727522..16727723 58..259 100 -> Plus
arm_3L 16730325..16731218 260..1153 100 -> Plus
arm_3L 16731811..16732296 1154..1641 99   Plus

BO09479.pep Sequence

Translation from 16 to 1657

> BO09479.pep
MMQIILPLFVLTASCLGSPVSQTRRFPNDFLWGVGSSSYQIEGGWNADDK
GESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKRDVQMVKELHVGTYRFS
LSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHWELPQKL
QELGGWTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNEPWHVCEHGYGVD
YMAPSYNYPGIPAYLCGHNLLKAHAEVVHMYRELFQPRQGGRMGITLDTS
WPEPRDPNSAEDREASERAMQFYVGWFGHPIFSKHGNYPKVMIERIRNLS
KEQGFGARSRLPEFTTEEIHRIRGTSDFFGINSYTSNLVTSNGHNNTGKF
PVPSFNHDMGVVESQEGVDWPGSGSVWLKVYPKGMYNLLMWIHREYNAPE
IIVTENGVSDRGGLEDYARVDYYNLYLSAVLDAMEDGANISGYIAWSLMD
SYEWKAGFSEKFGLYHVDFNSPQRTRTPKISARVFAQLCKTNTIDWSYRP
KLDEEQQLVAMAQLPAEARTSGASGAVSWSLMGILLLALLRASFLDH

BO09479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9701-PA 541 CG9701-PA 1..541 1..541 2943 100 Plus