Clone Sequence Records
BO09479.3prime Sequence
861 bp (844 high quality bases) assembled on 2006-01-23
> BO09479.3prime
ATGGTCTAGAAAGCTTGCTCTAAGCAGAGCCAGCAGTAGAATGCCCATCA
GACTCCAACTGACAGCACCGCTAGCACCACTTGTCCTGGCTTCCGCCGGC
AGCTGAGCCATGGCCACCAGCTGCTGCTCCTCATCCAGCTTGGGTCTGTA
GCTCCAATCGATGGTGTTTGTCTTGCAGAGCTGGGCGAATACTCTCGCCG
AGATCTTGGGCGTTCTGGTGCGTTGCGGTGAGTTGAAGTCCACATGATAG
AGACCGAATTTCTCCGAGAAGCCTGCCTTCCACTCATAGCTGTCCATCAG
ACTCCAGGCGATGTAGCCACTGATATTCGCTCCATCCTCCATGGCATCCA
GAACCGCCGACAGATAGAGATTGTAGTAGTCCACGCGGGCATAGTCCTCC
AGACCACCGCGATCACTGACTCCGTTCTCCGTAACGATTATCTCGGGCGC
ATTGTACTCCCGGTGTATCCACATCAACAGATTGTACATTCCCTTGGGAT
AGACCTTGAGCCAAACGGATCCGGAACCGGGCCAATCGACGCCCTCCTGG
CTCTCGACCACGCCCATGTCGTGATTAAAGGATGGAACTGGAAACTTGCC
GGTATTATTGTGACCATTGGAGGTGACCAGGTTGCTGGTATAGGAATTGA
TGCCGAAGAAGTCGGAGGTGCCGCGTATGCGATGAATCTCCTCAGTGGTG
AACTCAGGCAGTCTGGATCGTGCTCCGAAACCCTGCTCCTTGCTCAAGTT
CCGAATGCGCTCGATCATCACCTTGGGATAGTTACCGTGCTTGGAAAAGA
TGGGATGACCGAACCAGCCTACATAGAACTGCATGGCTCGCTCGGAGGCC
TCACGATCCTC
BO09479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-PA | 1626 | CG9701-RA | 781..1623 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-RA | 2005 | CG9701-RA | 995..1837 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16738709..16739196 | 506..19 | 2440 | 100 | Minus |
3L | 28110227 | 3L | 16737762..16738120 | 861..503 | 1795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:55:28 has no hits.
BO09479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:55 Download gff for
BO09479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-PA | 781..1626 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:19 Download gff for
BO09479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-PA | 781..1626 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:16:47 Download gff for
BO09479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 995..1841 | 14..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:34 Download gff for
BO09479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 995..1841 | 14..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:34 Download gff for
BO09479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16737762..16738118 | 505..861 | 100 | -> | Minus |
3L | 16738711..16739200 | 14..504 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:16:47 Download gff for
BO09479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16730862..16731218 | 505..861 | 100 | -> | Minus |
arm_3L | 16731811..16732300 | 14..504 | 99 | | Minus |
BO09479.5prime Sequence
903 bp (794 high quality bases) assembled on 2006-01-23
> BO09479.5prime
GAAGTTATCAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGA
CTGCCTCATGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAAC
GACTTTCTCTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTG
GAACGCGGATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTC
ATCCCGAGAAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGC
TATCATCAGTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGG
CACCTATCGCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATA
TGAACCACGTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGAC
GAACTGCTGCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGA
ATTGCCGCAGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAA
TTCCGCTTTTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGAT
CGGGTGAAGATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCA
CGGTTACGGAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTC
CCGCCTACCTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTG
CACATGTACCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCAT
CACACTGGATACGTCGTGGCCAGAGCCCAGGGATCCCAACTCCGCCGAGG
ATCGTGAGGCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGT
CATCCCATCTTTTCCAGCACGGTAACTATCCCAAGGTGATGATCGAGCGC
ATT
BO09479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-PA | 1626 | CG9701-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
CG9701-PA | 1626 | CG9701-RA | 851..888 | 866..903 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-RA | 2005 | CG9701-RA | 213..1102 | 15..903 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16737222..16737869 | 257..903 | 3190 | 99.8 | Plus |
3L | 28110227 | 3L | 16734422..16734623 | 58..259 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 16733758..16733800 | 15..57 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:12:03 has no hits.
BO09479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:56 Download gff for
BO09479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:20 Download gff for
BO09479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:21 Download gff for
BO09479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 213..1102 | 15..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:45:18 Download gff for
BO09479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 213..1102 | 15..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:45:18 Download gff for
BO09479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16734422..16734623 | 58..259 | 100 | -> | Plus |
3L | 16733758..16733800 | 15..57 | 100 | -> | Plus |
3L | 16737225..16737869 | 260..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:21 Download gff for
BO09479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16726858..16726900 | 15..57 | 100 | -> | Plus |
arm_3L | 16727522..16727723 | 58..259 | 100 | -> | Plus |
arm_3L | 16730325..16730969 | 260..903 | 99 | | Plus |
BO09479.complete Sequence
1657 bp (1657 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631510
> BO09479.complete
GAAGTTATCAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGA
CTGCCTCATGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAAC
GACTTTCTCTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTG
GAACGCGGATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTC
ATCCCGAGAAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGC
TATCATCAGTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGG
CACCTATCGCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATA
TGAACCACGTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGAC
GAACTGCTGCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGA
ATTGCCGCAGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAA
TTCCGCTTTTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGAT
CGGGTGAAGATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCA
CGGTTACGGAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTC
CCGCCTACCTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTG
CACATGTACCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCAT
CACACTGGATACGTCGTGGCCAGAGCCCAGGGATCCCAACTCCGCCGAGG
ATCGTGAGGCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGT
CATCCCATCTTTTCCAAGCACGGTAACTATCCCAAGGTGATGATCGAGCG
CATTCGGAACTTGAGCAAGGAGCAGGGTTTCGGAGCACGATCCAGACTGC
CTGAGTTCACCACTGAGGAGATTCATCGCATACGCGGCACCTCCGACTTC
TTCGGCATCAATTCCTATACCAGCAACCTGGTCACCTCCAATGGTCACAA
TAATACCGGCAAGTTTCCAGTTCCATCCTTTAATCACGACATGGGCGTGG
TCGAGAGCCAGGAGGGCGTCGATTGGCCCGGTTCCGGATCCGTTTGGCTC
AAGGTCTATCCCAAGGGAATGTACAATCTGTTGATGTGGATACACCGGGA
GTACAATGCGCCCGAGATAATCGTTACGGAGAACGGAGTCAGTGATCGCG
GTGGTCTGGAGGACTATGCCCGCGTGGACTACTACAATCTCTATCTGTCG
GCGGTTCTGGATGCCATGGAGGATGGAGCGAATATCAGTGGCTACATCGC
CTGGAGTCTGATGGACAGCTATGAGTGGAAGGCAGGCTTCTCGGAGAAAT
TCGGTCTCTATCATGTGGACTTCAACTCACCGCAACGCACCAGAACGCCC
AAGATCTCGGCGAGAGTATTCGCCCAGCTCTGCAAGACAAACACCATCGA
TTGGAGCTACAGACCCAAGCTGGATGAGGAGCAGCAGCTGGTGGCCATGG
CTCAGCTGCCGGCGGAAGCCAGGACAAGTGGTGCTAGCGGTGCTGTCAGT
TGGAGTCTGATGGGCATTCTACTGCTGGCTCTGCTTAGAGCAAGCTTTCT
AGACCAT
BO09479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-RA | 1626 | CG9701-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-RA | 2005 | CG9701-RA | 213..1837 | 15..1639 | 8125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16737222..16738120 | 257..1155 | 4495 | 100 | Plus |
3L | 28110227 | 3L | 16738709..16739196 | 1152..1639 | 2440 | 100 | Plus |
3L | 28110227 | 3L | 16734422..16734623 | 58..259 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 16733758..16733800 | 15..57 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:07:28 has no hits.
BO09479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:15 Download gff for
BO09479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 1..1626 | 17..1643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:46 Download gff for
BO09479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 185..1813 | 15..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:55:49 Download gff for
BO09479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 215..1837 | 17..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:15 Download gff for
BO09479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 185..1813 | 15..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:24 Download gff for
BO09479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9701-RA | 215..1837 | 17..1641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:24 Download gff for
BO09479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16733760..16733800 | 17..57 | 100 | -> | Plus |
3L | 16734422..16734623 | 58..259 | 100 | -> | Plus |
3L | 16737225..16738118 | 260..1153 | 100 | -> | Plus |
3L | 16738711..16739196 | 1154..1641 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:55:49 Download gff for
BO09479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16726860..16726900 | 17..57 | 100 | -> | Plus |
arm_3L | 16727522..16727723 | 58..259 | 100 | -> | Plus |
arm_3L | 16730325..16731218 | 260..1153 | 100 | -> | Plus |
arm_3L | 16731811..16732296 | 1154..1641 | 99 | | Plus |
BO09479.pep Sequence
Translation from 16 to 1657
> BO09479.pep
MMQIILPLFVLTASCLGSPVSQTRRFPNDFLWGVGSSSYQIEGGWNADDK
GESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKRDVQMVKELHVGTYRFS
LSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHWELPQKL
QELGGWTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNEPWHVCEHGYGVD
YMAPSYNYPGIPAYLCGHNLLKAHAEVVHMYRELFQPRQGGRMGITLDTS
WPEPRDPNSAEDREASERAMQFYVGWFGHPIFSKHGNYPKVMIERIRNLS
KEQGFGARSRLPEFTTEEIHRIRGTSDFFGINSYTSNLVTSNGHNNTGKF
PVPSFNHDMGVVESQEGVDWPGSGSVWLKVYPKGMYNLLMWIHREYNAPE
IIVTENGVSDRGGLEDYARVDYYNLYLSAVLDAMEDGANISGYIAWSLMD
SYEWKAGFSEKFGLYHVDFNSPQRTRTPKISARVFAQLCKTNTIDWSYRP
KLDEEQQLVAMAQLPAEARTSGASGAVSWSLMGILLLALLRASFLDH
BO09479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9701-PA | 541 | CG9701-PA | 1..541 | 1..541 | 2943 | 100 | Plus |