Clone BO09481 Report

Search the DGRC for BO09481

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG10764-RA
Protein status:BO09481.pep: validated full length
Sequenced Size:1603

Clone Sequence Records

BO09481.3prime Sequence

906 bp (771 high quality bases) assembled on 2006-01-23

> BO09481.3prime
ATGGTCTAGAAAGCTTGCAGATGACGTATTTAACGAATATAGCAAGGAAA
GAATCCAATCCGTGTGCCTCATAACATTCGTAAAAACGAGTATGTTTTTC
GATGAAAAACTGAAAATGCCCACCAAAATGTAGCGTATCTGGCCATTGGC
ATTCATCCCTCCAACCACTATGTAGCTACGTTTCTGGCGGGGATTACTTG
TGTCGGATGGATCTACCATGCACACTTGATTTTCGTTGATTTGAAATCCG
AGATGTTTCGCGCATTGGCTCCCTTCCATTAGCCTGACGTCGAATTGTTC
AGCTAAATCTGTATCAATTATTTTCAATTCTCGAGCCTTTTCGGCGTTTT
GCTGGTATATTTGCGTTGTCAAAATGCAGATGGGTTTCATTGCTGTGCTG
CTTATTGATCGAACAAGTTTGAGTACTGCTATGTCATTTCGGTAATCATT
CGTAGTAAAATTTGGGTGCTTTGAAACCGATTCAATTTGGTTGATTGCGC
TTATTCCTTCGAGCACTACGAACACGTATAAATAGGCGGCAACTGTGGGC
AGGTCTGTGGCAGCAGCGATGATCAATTGATCTGTTATTAATACGCCAAC
GGCATAAGAACCAGGCCAATAAATTCTTAGCTGCGCGATCGGTGCCGCGA
TATCCTGACTGCAGCTATTGTACAACATCGAAGGAAGTGGTGGTGAAGCC
GCAGGAGTCCAGTGCCGATTAGCGTCAGGAGCAATGGGATTGCCCATGGC
AATGTCTCCCCCGGACACGCCGATTGGTAGGTAGTCATTTCTAGCTATTG
TCGATGAGATCCAATCCACATAGCTGGTCACGTCGGTATAGACTCCTACT
CCACGGCATTCTGGATCCCCAAAGCTACGATTCCTAACTGCACCTCATAA
CTTTTA

BO09481.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-PA 1572 CG10764-RA 712..1569 876..19 4290 100 Minus
CG10764-PA 1572 CG10764-RA 681..711 906..876 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-RA 1700 CG10764-RA 704..1592 906..19 4420 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17455244..17455621 396..19 1890 100 Minus
2R 25286936 2R 17454504..17454832 906..579 1595 99.7 Minus
2R 25286936 2R 17455053..17455189 529..393 685 100 Minus
2R 25286936 2R 17454909..17454957 578..530 245 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:19:10 has no hits.

BO09481.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:59 Download gff for BO09481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-PA 682..1572 15..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:24 Download gff for BO09481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-PA 682..1572 15..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:26:32 Download gff for BO09481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 705..1595 15..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:52 Download gff for BO09481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 705..1595 15..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:52 Download gff for BO09481.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17455053..17455189 393..529 100 -> Minus
2R 17454505..17454832 579..905 99 -> Minus
2R 17454909..17454957 530..578 100 -> Minus
2R 17455248..17455624 15..392 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:26:32 Download gff for BO09481.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13342010..13342337 579..905 99 -> Minus
arm_2R 13342414..13342462 530..578 100 -> Minus
arm_2R 13342558..13342694 393..529 100 -> Minus
arm_2R 13342753..13343129 15..392 99   Minus

BO09481.5prime Sequence

801 bp (756 high quality bases) assembled on 2006-01-23

> BO09481.5prime
GAAGTTATCAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTT
TGTTAACTTTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACT
CCTTGTGGGATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGC
CGAGCCAAATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTC
AATGCGGTGGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCAT
TGCTTGGTAAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACAT
AAATGAGCCCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATG
ACTTCATTGCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCG
GAGAGTATCGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGA
TCCGGCTCTCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTG
GCTGGGGAAATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTAT
CTTCTACACTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCT
CAATTCAAGACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAG
GCGATTCTGGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAA
AGTTATGAGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCG
TGGAGTAGGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCAT
C

BO09481.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-PA 1572 CG10764-RA 1..785 17..801 3925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-RA 1700 CG10764-RA 24..808 17..801 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17454224..17454608 417..801 1925 100 Plus
2R 25286936 2R 17453422..17453635 17..230 1070 100 Plus
2R 25286936 2R 17454029..17454174 274..419 730 100 Plus
2R 25286936 2R 17453896..17453953 228..285 245 94.8 Plus
Blast to na_te.dros performed on 2015-02-13 09:11:39 has no hits.

BO09481.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:00 Download gff for BO09481.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:25 Download gff for BO09481.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:16 Download gff for BO09481.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 21..808 14..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:43:23 Download gff for BO09481.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 21..808 14..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:43:23 Download gff for BO09481.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17453419..17453632 14..227 99 -> Plus
2R 17453896..17453941 228..273 100 -> Plus
2R 17454029..17454174 274..419 100 -> Plus
2R 17454227..17454608 420..801 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:16 Download gff for BO09481.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13340924..13341137 14..227 99 -> Plus
arm_2R 13341401..13341446 228..273 100 -> Plus
arm_2R 13341534..13341679 274..419 100 -> Plus
arm_2R 13341732..13342113 420..801 100   Plus

BO09481.complete Sequence

1603 bp assembled on 2007-10-17

GenBank Submission: FJ631511

> BO09481.complete
GAAGTTATCAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTT
TGTTAACTTTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACT
CCTTGTGGGATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGC
CGAGCCAAATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTC
AATGCGGTGGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCAT
TGCTTGGTAAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACAT
AAATGAGCCCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATG
ACTTCATTGCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCG
GAGAGTATCGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGA
TCCGGCTCTCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTG
GCTGGGGAAATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTAT
CTTCTACACTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCT
CAATTCAAGACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAG
GCGATTCTGGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAA
AGTTATGAGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCG
TGGAGTAGGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCAT
CGACAATAGCTAGAAATGACTACCTACCAATCGGCGTGTCCGGGGGAGAC
ATTGCCATGGGCAATCCCATTGCTCCTGACGCTAATCGGCACTGGACTCC
TGCGGCTTCACCACCACTTCCTTCGATGTTGTACAATAGCTGCAGTCAGG
ATATCGCGGCACCGATCGCGCAGCTAAGAATTTATTGGCCTGGTTCTTAT
GCCGTTGGCGTATTAATAACAGATCAATTGATCATCGCTGCTGCCACAGA
CCTGCCCACAGTTGCCGCCTATTTATACGTGTTCGTAGTGCTCGAAGGAA
TAAGCGCAATCAACCAAATTGAATCGGTTTCAAAGCACCCAAATTTTACT
ACGAATGATTACCGAAATGACATAGCAGTACTCAAACTTGTTCGATCAAT
AAGCAGCACAGCAATGAAACCCATCTGCATTTTGACAACGCAAATATACC
AGCAAAACGCCGAAAAGGCTCGAGAATTGAAAATAATTGATACAGATTTA
GCTGAACAATTCGACGTCAGGCTAATGGAAGGGAGCCAATGCGCGAAACA
TCTCGGATTTCAAATCAACGAAAATCAAGTGTGCATGGTAGATCCATCCG
ACACAAGTAATCCCCGCCAGAAACGTAGCTACATAGTGGTTGGAGGGATG
AATGCCAATGGCCAGATACGCTACATTTTGGTGGGCATTTTCAGTTTTTC
ATCGAAAAACATACTCGTTTTTACGAATGTTATGAGGCACACGGATTGGA
TTCTTTCCTTGCTATATTCGTTAAATACGTCATCTGCAAGCTTTCTAGAC
CAT

BO09481.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-RA 1572 CG10764-PA 1..1569 17..1585 7845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-RA 1700 CG10764-RA 24..1592 17..1585 7845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17454224..17454832 417..1025 3045 100 Plus
2R 25286936 2R 17455244..17455621 1208..1585 1890 100 Plus
2R 25286936 2R 17453422..17453635 17..230 1070 100 Plus
2R 25286936 2R 17454029..17454174 274..419 730 100 Plus
2R 25286936 2R 17455053..17455189 1075..1211 685 100 Plus
2R 25286936 2R 17453896..17453953 228..285 245 94.8 Plus
2R 25286936 2R 17454909..17454957 1026..1074 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:37:43 has no hits.

BO09481.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:46 Download gff for BO09481.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 1..1572 17..1589 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:10 Download gff for BO09481.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 1..1575 14..1589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:44 Download gff for BO09481.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 24..1592 17..1587 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:40 Download gff for BO09481.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 4..1572 17..1587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:33 Download gff for BO09481.complete
Subject Subject Range Query Range Percent Splice Strand
CG10764-RA 24..1592 17..1587 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:33 Download gff for BO09481.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17453422..17453632 17..227 100 -> Plus
2R 17453896..17453941 228..273 100 -> Plus
2R 17454029..17454174 274..419 100 -> Plus
2R 17454227..17454832 420..1025 100 -> Plus
2R 17454909..17454957 1026..1074 100 -> Plus
2R 17455053..17455189 1075..1211 100 -> Plus
2R 17455248..17455621 1212..1587 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:44 Download gff for BO09481.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13340927..13341137 17..227 100 -> Plus
arm_2R 13341401..13341446 228..273 100 -> Plus
arm_2R 13341534..13341679 274..419 100 -> Plus
arm_2R 13341732..13342337 420..1025 100 -> Plus
arm_2R 13342414..13342462 1026..1074 100 -> Plus
arm_2R 13342558..13342694 1075..1211 100 -> Plus
arm_2R 13342753..13343126 1212..1587 99   Plus

BO09481.pep Sequence

Translation from 16 to 1603

> BO09481.pep
MRSLVSVALLSLLTLCVTENEHFKFLETPCGISTRPKISGGDDAAEPNSI
WMAAIFNSSDFQCGGTIIHMRFVLSAAHCLVRGYDLYVRLGARNINEPAA
VHTVINVFVHHDFIASEYRNDIGLLQLSESIVYTVRVQPICIFLDPALKG
SVEKLKTFRALGWGNRNGKLSIMLQTIYLLHLKRNECKRKLNFNLNSRQI
CAGTKNGDTCRGDSGGPLSTNILFPSNKSYEVQLGIVSFGDPECRGVGVY
TDVTSYVDWISSTIARNDYLPIGVSGGDIAMGNPIAPDANRHWTPAASPP
LPSMLYNSCSQDIAAPIAQLRIYWPGSYAVGVLITDQLIIAAATDLPTVA
AYLYVFVVLEGISAINQIESVSKHPNFTTNDYRNDIAVLKLVRSISSTAM
KPICILTTQIYQQNAEKARELKIIDTDLAEQFDVRLMEGSQCAKHLGFQI
NENQVCMVDPSDTSNPRQKRSYIVVGGMNANGQIRYILVGIFSFSSKNIL
VFTNVMRHTDWILSLLYSLNTSSASFLDH

BO09481.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10764-PA 523 CG10764-PA 1..523 1..523 2715 100 Plus
CG30187-PD 451 CG30187-PD 1..448 52..516 663 36 Plus
CG30187-PC 440 CG30187-PC 1..437 52..516 627 35.4 Plus
CG43110-PA 483 CG43110-PA 23..479 25..516 596 32 Plus
CG43110-PB 483 CG43110-PB 23..479 25..516 596 32 Plus