Clone Sequence Records
BO09481.3prime Sequence
906 bp (771 high quality bases) assembled on 2006-01-23
> BO09481.3prime
ATGGTCTAGAAAGCTTGCAGATGACGTATTTAACGAATATAGCAAGGAAA
GAATCCAATCCGTGTGCCTCATAACATTCGTAAAAACGAGTATGTTTTTC
GATGAAAAACTGAAAATGCCCACCAAAATGTAGCGTATCTGGCCATTGGC
ATTCATCCCTCCAACCACTATGTAGCTACGTTTCTGGCGGGGATTACTTG
TGTCGGATGGATCTACCATGCACACTTGATTTTCGTTGATTTGAAATCCG
AGATGTTTCGCGCATTGGCTCCCTTCCATTAGCCTGACGTCGAATTGTTC
AGCTAAATCTGTATCAATTATTTTCAATTCTCGAGCCTTTTCGGCGTTTT
GCTGGTATATTTGCGTTGTCAAAATGCAGATGGGTTTCATTGCTGTGCTG
CTTATTGATCGAACAAGTTTGAGTACTGCTATGTCATTTCGGTAATCATT
CGTAGTAAAATTTGGGTGCTTTGAAACCGATTCAATTTGGTTGATTGCGC
TTATTCCTTCGAGCACTACGAACACGTATAAATAGGCGGCAACTGTGGGC
AGGTCTGTGGCAGCAGCGATGATCAATTGATCTGTTATTAATACGCCAAC
GGCATAAGAACCAGGCCAATAAATTCTTAGCTGCGCGATCGGTGCCGCGA
TATCCTGACTGCAGCTATTGTACAACATCGAAGGAAGTGGTGGTGAAGCC
GCAGGAGTCCAGTGCCGATTAGCGTCAGGAGCAATGGGATTGCCCATGGC
AATGTCTCCCCCGGACACGCCGATTGGTAGGTAGTCATTTCTAGCTATTG
TCGATGAGATCCAATCCACATAGCTGGTCACGTCGGTATAGACTCCTACT
CCACGGCATTCTGGATCCCCAAAGCTACGATTCCTAACTGCACCTCATAA
CTTTTA
BO09481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-PA | 1572 | CG10764-RA | 712..1569 | 876..19 | 4290 | 100 | Minus |
CG10764-PA | 1572 | CG10764-RA | 681..711 | 906..876 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-RA | 1700 | CG10764-RA | 704..1592 | 906..19 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17455244..17455621 | 396..19 | 1890 | 100 | Minus |
2R | 25286936 | 2R | 17454504..17454832 | 906..579 | 1595 | 99.7 | Minus |
2R | 25286936 | 2R | 17455053..17455189 | 529..393 | 685 | 100 | Minus |
2R | 25286936 | 2R | 17454909..17454957 | 578..530 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:19:10 has no hits.
BO09481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:11:59 Download gff for
BO09481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-PA | 682..1572 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:24 Download gff for
BO09481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-PA | 682..1572 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:26:32 Download gff for
BO09481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 705..1595 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:52 Download gff for
BO09481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 705..1595 | 15..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:52 Download gff for
BO09481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17455053..17455189 | 393..529 | 100 | -> | Minus |
2R | 17454505..17454832 | 579..905 | 99 | -> | Minus |
2R | 17454909..17454957 | 530..578 | 100 | -> | Minus |
2R | 17455248..17455624 | 15..392 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:26:32 Download gff for
BO09481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13342010..13342337 | 579..905 | 99 | -> | Minus |
arm_2R | 13342414..13342462 | 530..578 | 100 | -> | Minus |
arm_2R | 13342558..13342694 | 393..529 | 100 | -> | Minus |
arm_2R | 13342753..13343129 | 15..392 | 99 | | Minus |
BO09481.5prime Sequence
801 bp (756 high quality bases) assembled on 2006-01-23
> BO09481.5prime
GAAGTTATCAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTT
TGTTAACTTTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACT
CCTTGTGGGATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGC
CGAGCCAAATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTC
AATGCGGTGGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCAT
TGCTTGGTAAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACAT
AAATGAGCCCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATG
ACTTCATTGCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCG
GAGAGTATCGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGA
TCCGGCTCTCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTG
GCTGGGGAAATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTAT
CTTCTACACTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCT
CAATTCAAGACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAG
GCGATTCTGGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAA
AGTTATGAGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCG
TGGAGTAGGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCAT
C
BO09481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-PA | 1572 | CG10764-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-RA | 1700 | CG10764-RA | 24..808 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17454224..17454608 | 417..801 | 1925 | 100 | Plus |
2R | 25286936 | 2R | 17453422..17453635 | 17..230 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 17454029..17454174 | 274..419 | 730 | 100 | Plus |
2R | 25286936 | 2R | 17453896..17453953 | 228..285 | 245 | 94.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:11:39 has no hits.
BO09481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:00 Download gff for
BO09481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:25 Download gff for
BO09481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:16 Download gff for
BO09481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 21..808 | 14..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:43:23 Download gff for
BO09481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 21..808 | 14..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:43:23 Download gff for
BO09481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17453419..17453632 | 14..227 | 99 | -> | Plus |
2R | 17453896..17453941 | 228..273 | 100 | -> | Plus |
2R | 17454029..17454174 | 274..419 | 100 | -> | Plus |
2R | 17454227..17454608 | 420..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:16 Download gff for
BO09481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13340924..13341137 | 14..227 | 99 | -> | Plus |
arm_2R | 13341401..13341446 | 228..273 | 100 | -> | Plus |
arm_2R | 13341534..13341679 | 274..419 | 100 | -> | Plus |
arm_2R | 13341732..13342113 | 420..801 | 100 | | Plus |
BO09481.complete Sequence
1603 bp assembled on 2007-10-17
GenBank Submission: FJ631511
> BO09481.complete
GAAGTTATCAGTCGACATGCGGTCGTTGGTCTCGGTTGCTTTGTTATCTT
TGTTAACTTTGTGTGTTACAGAAAATGAACACTTTAAGTTTTTAGAGACT
CCTTGTGGGATATCAACCCGTCCCAAAATTAGCGGTGGTGACGATGCAGC
CGAGCCAAATTCTATATGGATGGCAGCGATATTCAATTCATCCGATTTTC
AATGCGGTGGCACAATTATACATATGCGTTTTGTGTTAAGTGCTGCTCAT
TGCTTGGTAAGAGGATATGATCTATACGTGAGGTTGGGGGCACGCAACAT
AAATGAGCCCGCTGCTGTCCACACAGTCATTAATGTCTTTGTGCACCATG
ACTTCATTGCATCGGAATACCGAAATGATATAGGACTGCTTCAACTGTCG
GAGAGTATCGTCTACACAGTTCGAGTTCAACCAATTTGCATCTTTTTGGA
TCCGGCTCTCAAAGGGAGTGTTGAAAAATTGAAAACGTTCAGAGCCCTTG
GCTGGGGAAATAGGAACGGAAAATTGAGCATAATGTTGCAAACCATCTAT
CTTCTACACTTGAAAAGAAATGAGTGCAAACGCAAATTGAACTTTAATCT
CAATTCAAGACAGATTTGCGCTGGAACCAAAAATGGAGACACCTGTAGAG
GCGATTCTGGGGGTCCCTTGTCCACGAATATATTGTTTCCTTCCAATAAA
AGTTATGAGGTGCAGTTAGGAATCGTAAGCTTTGGGGATCCAGAATGCCG
TGGAGTAGGAGTCTATACCGACGTGACCAGCTATGTGGATTGGATCTCAT
CGACAATAGCTAGAAATGACTACCTACCAATCGGCGTGTCCGGGGGAGAC
ATTGCCATGGGCAATCCCATTGCTCCTGACGCTAATCGGCACTGGACTCC
TGCGGCTTCACCACCACTTCCTTCGATGTTGTACAATAGCTGCAGTCAGG
ATATCGCGGCACCGATCGCGCAGCTAAGAATTTATTGGCCTGGTTCTTAT
GCCGTTGGCGTATTAATAACAGATCAATTGATCATCGCTGCTGCCACAGA
CCTGCCCACAGTTGCCGCCTATTTATACGTGTTCGTAGTGCTCGAAGGAA
TAAGCGCAATCAACCAAATTGAATCGGTTTCAAAGCACCCAAATTTTACT
ACGAATGATTACCGAAATGACATAGCAGTACTCAAACTTGTTCGATCAAT
AAGCAGCACAGCAATGAAACCCATCTGCATTTTGACAACGCAAATATACC
AGCAAAACGCCGAAAAGGCTCGAGAATTGAAAATAATTGATACAGATTTA
GCTGAACAATTCGACGTCAGGCTAATGGAAGGGAGCCAATGCGCGAAACA
TCTCGGATTTCAAATCAACGAAAATCAAGTGTGCATGGTAGATCCATCCG
ACACAAGTAATCCCCGCCAGAAACGTAGCTACATAGTGGTTGGAGGGATG
AATGCCAATGGCCAGATACGCTACATTTTGGTGGGCATTTTCAGTTTTTC
ATCGAAAAACATACTCGTTTTTACGAATGTTATGAGGCACACGGATTGGA
TTCTTTCCTTGCTATATTCGTTAAATACGTCATCTGCAAGCTTTCTAGAC
CAT
BO09481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-RA | 1572 | CG10764-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-RA | 1700 | CG10764-RA | 24..1592 | 17..1585 | 7845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17454224..17454832 | 417..1025 | 3045 | 100 | Plus |
2R | 25286936 | 2R | 17455244..17455621 | 1208..1585 | 1890 | 100 | Plus |
2R | 25286936 | 2R | 17453422..17453635 | 17..230 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 17454029..17454174 | 274..419 | 730 | 100 | Plus |
2R | 25286936 | 2R | 17455053..17455189 | 1075..1211 | 685 | 100 | Plus |
2R | 25286936 | 2R | 17453896..17453953 | 228..285 | 245 | 94.8 | Plus |
2R | 25286936 | 2R | 17454909..17454957 | 1026..1074 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:37:43 has no hits.
BO09481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:46 Download gff for
BO09481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 1..1572 | 17..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:10 Download gff for
BO09481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 1..1575 | 14..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:44 Download gff for
BO09481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 24..1592 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:40 Download gff for
BO09481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 4..1572 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:33 Download gff for
BO09481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10764-RA | 24..1592 | 17..1587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:33 Download gff for
BO09481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17453422..17453632 | 17..227 | 100 | -> | Plus |
2R | 17453896..17453941 | 228..273 | 100 | -> | Plus |
2R | 17454029..17454174 | 274..419 | 100 | -> | Plus |
2R | 17454227..17454832 | 420..1025 | 100 | -> | Plus |
2R | 17454909..17454957 | 1026..1074 | 100 | -> | Plus |
2R | 17455053..17455189 | 1075..1211 | 100 | -> | Plus |
2R | 17455248..17455621 | 1212..1587 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:44 Download gff for
BO09481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13340927..13341137 | 17..227 | 100 | -> | Plus |
arm_2R | 13341401..13341446 | 228..273 | 100 | -> | Plus |
arm_2R | 13341534..13341679 | 274..419 | 100 | -> | Plus |
arm_2R | 13341732..13342337 | 420..1025 | 100 | -> | Plus |
arm_2R | 13342414..13342462 | 1026..1074 | 100 | -> | Plus |
arm_2R | 13342558..13342694 | 1075..1211 | 100 | -> | Plus |
arm_2R | 13342753..13343126 | 1212..1587 | 99 | | Plus |
BO09481.pep Sequence
Translation from 16 to 1603
> BO09481.pep
MRSLVSVALLSLLTLCVTENEHFKFLETPCGISTRPKISGGDDAAEPNSI
WMAAIFNSSDFQCGGTIIHMRFVLSAAHCLVRGYDLYVRLGARNINEPAA
VHTVINVFVHHDFIASEYRNDIGLLQLSESIVYTVRVQPICIFLDPALKG
SVEKLKTFRALGWGNRNGKLSIMLQTIYLLHLKRNECKRKLNFNLNSRQI
CAGTKNGDTCRGDSGGPLSTNILFPSNKSYEVQLGIVSFGDPECRGVGVY
TDVTSYVDWISSTIARNDYLPIGVSGGDIAMGNPIAPDANRHWTPAASPP
LPSMLYNSCSQDIAAPIAQLRIYWPGSYAVGVLITDQLIIAAATDLPTVA
AYLYVFVVLEGISAINQIESVSKHPNFTTNDYRNDIAVLKLVRSISSTAM
KPICILTTQIYQQNAEKARELKIIDTDLAEQFDVRLMEGSQCAKHLGFQI
NENQVCMVDPSDTSNPRQKRSYIVVGGMNANGQIRYILVGIFSFSSKNIL
VFTNVMRHTDWILSLLYSLNTSSASFLDH
BO09481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10764-PA | 523 | CG10764-PA | 1..523 | 1..523 | 2715 | 100 | Plus |
CG30187-PD | 451 | CG30187-PD | 1..448 | 52..516 | 663 | 36 | Plus |
CG30187-PC | 440 | CG30187-PC | 1..437 | 52..516 | 627 | 35.4 | Plus |
CG43110-PA | 483 | CG43110-PA | 23..479 | 25..516 | 596 | 32 | Plus |
CG43110-PB | 483 | CG43110-PB | 23..479 | 25..516 | 596 | 32 | Plus |