Clone Sequence Records
BO09482.3prime Sequence
943 bp (825 high quality bases) assembled on 2006-01-23
> BO09482.3prime
ATGGTCTAGAAAGCTTGCGGGAGAGTATCTTGCTTTTGGCTGCAGATCGC
AATATGTAATTCCAGGTCCTAAGCAAGAGGCGAAGCCCATCAAATGAGGC
AAGGTGCTTTGTTCGTAAACTCCAGTGAAAAGATGAGACCATGGACCATG
AGCATAGACGGCCACATCGCCACCGCCGTGTGTCTCCTCGGTCATGGGCA
CTCCATGTGGATAGATGGCATCCGGTTTGGAAAAGTCCAGGTTACGGAGA
TCAACGCGCTCCACCACTCCGTCCGTCGATTTGTAGAATCTCTCGTAGGC
CGGGCCGTTGGCATATGAGATGGACGTGTAGGGCAGCTGGTCCACATTAC
TTAGCTCGGAATTGAGTCCTACTATGCTGTTGTTAACATCCGGATAGCCG
CTGATCGTGACCGTGTGTCCGTGATCCGCACTCACCACAATTAAGGTGTC
CCAGGGATTGGTGAGTTGTCGTGCCTTTCTCACTGCGTCCGAAAACTGAA
CGGTTTCATCCAAGGCCTTCTTGGCCTTGGTCTCATGATGGGCGTGATCG
ATTCGACCGCCTTCCACGAAAAGGAAATACCCGTTTGGATCTCGGGAAAG
CACATTTATGGCCGCTGCCGTCATCTCGGGTAGCGTGGGTGTGTCTATGC
TGTCGTCCATGTGGTACGCCAAGTGAGAGGCATTGAAGAGCCCCAGCAGG
AAGTCAGTGTTCTGCGCATCATTGTTCAGGAGATCCGTACGACTAAACAC
CACCCTAGCATTACCCGGCTTTGTTTGTTGCCATTCCTCAATGAGGTTCC
TATTATCCAACCGCTGGCCCTTGTTTCGAACACATCGTTCGTGGTATTGG
GCAAGAATTTAATGGTTCCACGCCCATGACCACACGCAGTCGCTTGCCCA
CATCTCCGTCTATCAATTGCTGGGCGATATCCGGACAGTTTCC
BO09482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5656-PA | 1572 | CG5656-RA | 761..1569 | 827..19 | 4045 | 100 | Minus |
| CG5656-PA | 1572 | CG5656-RA | 643..715 | 943..871 | 365 | 100 | Minus |
| CG5656-PA | 1572 | CG5656-RA | 716..760 | 871..827 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5656-RA | 1785 | CG5656-RA | 712..1638 | 943..19 | 4585 | 99.8 | Minus |
| CG5656-RB | 1806 | CG5656-RB | 712..1659 | 943..19 | 4365 | 97.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21442630..21443430 | 145..943 | 3905 | 99.8 | Plus |
| 3L | 28110227 | 3L | 21442374..21442506 | 19..151 | 650 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:40:35 has no hits.
BO09482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:01 Download gff for
BO09482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-PA | 643..1572 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:26 Download gff for
BO09482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-PA | 643..1572 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:20 Download gff for
BO09482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 712..1638 | 19..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:28 Download gff for
BO09482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 712..1638 | 19..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:28 Download gff for
BO09482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21442374..21442501 | 19..146 | 100 | <- | Plus |
| 3L | 21442632..21443430 | 147..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:20 Download gff for
BO09482.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21435474..21435601 | 19..146 | 100 | <- | Plus |
| arm_3L | 21435732..21436530 | 147..943 | 99 | | Plus |
BO09482.5prime Sequence
827 bp (825 high quality bases) assembled on 2006-01-23
> BO09482.5prime
GAAGTTATCAGTCGACATGCGTGCTCTCCGGTTCTTTGCGGCTCTTGCCC
TCCAACTCACGGCCTGTAGCAGCCAGTACAAATATGGGCCAGAGCAATCC
TGGGACCTCGACTCTATTTCCGAGTTGAAGAGCAAGGAGTTCTGGTTTCA
CGACGCCCAGCGCACGCTCTACAATAAGCTATCCACTCCACCAAACCAAT
ATCGTGCCAAGAATGTCATATTTTTCCTGGGCGACGGTATGTCCGTTCCC
ACGGTAACCGCAGGCAGGATCTTCGATGGACAGCTGCGTGGAGTGGTGGG
CGAACGGAATCGTCTGGAGTTCGAGAAATTCAACTATGTCGGTCTGTCCA
AGACTTATTGCGTCAATAAGCAAGTGGCTGACTCCGCCTGCACAGCATCG
GCCTATCTGTCGGGGATCAAGGCGAACTATCTGACCATCGGAGTGACAGC
CGATGTGGAGTTGAACGACTGCAGGGGATCGCGCTTGCCGCAGAATAGGC
TCTCCTCGATTGCCGCCTGGGCGCTTAAAGGTAGCAAATCCGCTGGATTG
GTGACCACCACTCGGGTTACCCACGCCAGTCCGGCCGGAGTTTATGCGCA
CACTTCGAATCGCGATTTCGAGAGCGACTACGACGTGACCAAATTGGGTC
AAAATCCAGGAAACTGTCCGGATATCGCCCAGCAATTGATAGACGGAGAT
GTGGGCAAGCGACTGCGTGTGGTCATGGGCGGTGGAACCATTAAATTCTT
GCCCAATACCACGAACGATGTGTTCGGAAACAAGGGCCAGCGGTTGGATA
ATAGGAACCTCATTGAGGAATGGCACA
BO09482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5656-PA | 1572 | CG5656-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5656-RB | 1806 | CG5656-RB | 70..878 | 17..825 | 4045 | 100 | Plus |
| CG5656-RA | 1785 | CG5656-RA | 70..878 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21443264..21443738 | 825..351 | 2375 | 100 | Minus |
| 3L | 28110227 | 3L | 21443841..21444103 | 352..90 | 1315 | 100 | Minus |
| 3L | 28110227 | 3L | 21444675..21444750 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:18:46 has no hits.
BO09482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:02 Download gff for
BO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-PA | 1..809 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:28 Download gff for
BO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-PA | 1..809 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:47:28 Download gff for
BO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 62..878 | 8..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:07 Download gff for
BO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 62..878 | 8..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:07 Download gff for
BO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21443262..21443736 | 353..826 | 99 | <- | Minus |
| 3L | 21443841..21444100 | 93..352 | 100 | <- | Minus |
| 3L | 21444675..21444758 | 8..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:47:28 Download gff for
BO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21436362..21436836 | 353..826 | 99 | <- | Minus |
| arm_3L | 21436941..21437200 | 93..352 | 100 | <- | Minus |
| arm_3L | 21437775..21437858 | 8..92 | 95 | | Minus |
BO09482.complete Sequence
1603 bp (1603 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631512
> BO09482.complete
GAAGTTATCAGTCGACATGCGTGCTCTCCGGTTCTTTGCGGCTCTTGCCC
TCCAACTCACGGCCTGTAGCAGCCAGTACAAATATGGGCCAGAGCAATCC
TGGGACCTCGACTCTATTTCCGAGTTGAAGAGCAAGGAGTTCTGGTTTCA
CGACGCCCAGCGCACGCTCTACAATAAGCTATCCACTCCACCAAACCAAT
ATCGTGCCAAGAATGTCATATTTTTCCTGGGCGACGGTATGTCCGTTCCC
ACGGTAACCGCAGGCAGGATCTTCGATGGACAGCTGCGTGGAGTGGTGGG
CGAACGGAATCGTCTGGAGTTCGAGAAATTCAACTATGTCGGTCTGTCCA
AGACTTATTGCGTCAATAAGCAAGTGGCTGACTCCGCCTGCACAGCATCG
GCCTATCTGTCGGGGATCAAGGCGAACTATCTGACCATCGGAGTGACAGC
CGATGTGGAGTTGAACGACTGCAGGGGATCGCGCTTGCCGCAGAATAGGC
TCTCCTCGATTGCCGCCTGGGCGCTTAAAGGTAGCAAATCCGCTGGATTG
GTGACCACCACTCGGGTTACCCACGCCAGTCCGGCCGGAGTTTATGCGCA
CACTTCGAATCGCGATTTCGAGAGCGACTACGACGTGACCAAATTGGGTC
AAAATCCAGGAAACTGTCCGGATATCGCCCAGCAATTGATAGACGGAGAT
GTGGGCAAGCGACTGCGTGTGGTCATGGGCGGTGGAACCATTAAATTCTT
GCCCAATACCACGAACGATGTGTTCGGAAACAAGGGCCAGCGGTTGGATA
ATAGGAACCTCATTGAGGAATGGCAACAAACAAAGCCGGGTAATGCTAGG
GTGGTGTTTAGTCGTACGGATCTCCTGAACAATGATGCGCAGAACACTGA
CTTCCTGCTGGGGCTCTTCAATGCCTCTCACTTGGCGTACCACATGGACG
ACAGCATAGACACACCCACGCTACCCGAGATGACGGCAGCGGCCATAAAT
GTGCTTTCCCGAGATCCAAACGGGTATTTCCTTTTCGTGGAAGGCGGTCG
AATCGATCACGCCCATCATGAGACCAAGGCCAAGAAGGCCTTGGATGAAA
CCGTTCAGTTTTCGGACGCAGTGAGAAAGGCACGACAACTCACCAATCCC
TGGGACACCTTAATTGTGGTGAGTGCGGATCACGGACACACGGTCACGAT
CAGCGGCTATCCGGATGTTAACAACAGCATAGTAGGACTCAATTCCGAGC
TAAGTAATGTGGACCAGCTGCCCTACACGTCCATCTCATATGCCAACGGC
CCGGCCTACGAGAGATTCTACAAATCGACGGACGGAGTGGTGGAGCGCGT
TGATCTCCGTAACCTGGACTTTTCCAAACCGGATGCCATCTATCCACATG
GAGTGCCCATGACCGAGGAGACACACGGCGGTGGCGATGTGGCCGTCTAT
GCTCATGGTCCATGGTCTCATCTTTTCACTGGAGTTTACGAACAAAGCAC
CTTGCCTCATTTGATGGGCTTCGCCTCTTGCTTAGGACCTGGAATTACAT
ATTGCGATCTGCAGCCAAAAGCAAGATACTCTCCCGCAAGCTTTCTAGAC
CAT
BO09482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5656-RA | 1572 | CG5656-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
| CG5656-RB | 1593 | CG5656-PB | 1..1590 | 17..1585 | 7600 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5656-RA | 1785 | CG5656-RA | 70..1638 | 17..1585 | 7845 | 100 | Plus |
| CG5656-RB | 1806 | CG5656-RB | 70..1659 | 17..1585 | 7600 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21442630..21443738 | 1459..351 | 5545 | 100 | Minus |
| 3L | 28110227 | 3L | 21443841..21444103 | 352..90 | 1315 | 100 | Minus |
| 3L | 28110227 | 3L | 21442374..21442506 | 1585..1453 | 650 | 99.2 | Minus |
| 3L | 28110227 | 3L | 21444675..21444750 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:41:59 has no hits.
BO09482.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:16 Download gff for
BO09482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 1..1572 | 17..1586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:48 Download gff for
BO09482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 57..1633 | 8..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:54 Download gff for
BO09482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 70..1638 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:17 Download gff for
BO09482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 57..1633 | 8..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:16 Download gff for
BO09482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5656-RA | 70..1638 | 17..1587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:16 Download gff for
BO09482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21443841..21444100 | 93..352 | 100 | <- | Minus |
| 3L | 21444675..21444750 | 17..92 | 100 | | Minus |
| 3L | 21442372..21442501 | 1458..1587 | 98 | <- | Minus |
| 3L | 21442632..21443736 | 353..1457 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:54 Download gff for
BO09482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21435472..21435601 | 1458..1587 | 98 | <- | Minus |
| arm_3L | 21435732..21436836 | 353..1457 | 100 | <- | Minus |
| arm_3L | 21436941..21437200 | 93..352 | 100 | <- | Minus |
| arm_3L | 21437775..21437850 | 17..92 | 100 | | Minus |
BO09482.pep Sequence
Translation from 16 to 1603
> BO09482.pep
MRALRFFAALALQLTACSSQYKYGPEQSWDLDSISELKSKEFWFHDAQRT
LYNKLSTPPNQYRAKNVIFFLGDGMSVPTVTAGRIFDGQLRGVVGERNRL
EFEKFNYVGLSKTYCVNKQVADSACTASAYLSGIKANYLTIGVTADVELN
DCRGSRLPQNRLSSIAAWALKGSKSAGLVTTTRVTHASPAGVYAHTSNRD
FESDYDVTKLGQNPGNCPDIAQQLIDGDVGKRLRVVMGGGTIKFLPNTTN
DVFGNKGQRLDNRNLIEEWQQTKPGNARVVFSRTDLLNNDAQNTDFLLGL
FNASHLAYHMDDSIDTPTLPEMTAAAINVLSRDPNGYFLFVEGGRIDHAH
HETKAKKALDETVQFSDAVRKARQLTNPWDTLIVVSADHGHTVTISGYPD
VNNSIVGLNSELSNVDQLPYTSISYANGPAYERFYKSTDGVVERVDLRNL
DFSKPDAIYPHGVPMTEETHGGGDVAVYAHGPWSHLFTGVYEQSTLPHLM
GFASCLGPGITYCDLQPKARYSPASFLDH
BO09482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5656-PA | 523 | CG5656-PA | 1..523 | 1..523 | 2766 | 100 | Plus |
| CG5656-PB | 530 | CG5656-PB | 1..530 | 1..523 | 2748 | 98.7 | Plus |
| CG8147-PA | 546 | CG8147-PA | 61..530 | 35..506 | 1206 | 51.2 | Plus |
| CG5150-PB | 517 | CG5150-PB | 42..517 | 31..514 | 1110 | 47.7 | Plus |
| CG5150-PA | 517 | CG5150-PA | 42..517 | 31..514 | 1110 | 47.7 | Plus |
