Clone Sequence Records
BO09487.3prime Sequence
941 bp (859 high quality bases) assembled on 2006-01-23
> BO09487.3prime
ATGGTCTAGAAAGCTTGCTATCTCAATGCTTTTCGCCTGCAGACTCCTCA
GGATGCCGAGTAGCTGCAGGGACTCCAGCGGCTCGAAGTCATCTGCATAG
CGCACTGATGAGGGCTTCACCACATGACGCTCCCTGGGCATATCCAATAC
CAATGGCAGTTGTTCGGCCATCACGGAGTGGTGGGTGATCAGCGCTTTCA
GGCTGGTGAACTGTTTCTTGGCTCCCTTCAGGCGGTACATCTGGTTCCGG
GTGGACTGCACGGGATAGGTCTTGACCTTGTTGTTCCTCTCGAGTCGCAG
GACCAGTTCGAAATGTCGCGGCGTACTGCGTCGCAGAAGAAAGCTTCCAG
GTGTGGCCTGCTGCAGGTGCTCCAAAGCTGCCTTGGCCGTGATCCTGGGC
TGATACCAGGGACACGCCAGGAGCTCCGGCTCCTCGTCCTCATCATCGTC
GGAGTTCTGGTTGGCGCTGATGTATCTGGTGAATAGAGGTGCAGCTCGAC
GGCGTTTGCTCATGGTGTTGGGGGAATTCTCAGCTAAGAGTTGACAGCAA
TCGGAGATTCCAGCGTCGGAGTCCTCTTCTGCCTCCTCATCCTGCTCCTC
TTCGGGATTGGAGTCACTGCTTGGCTGACTGCTCTGCCAGCAGTTGAGGG
ACAGCAGGGACTTTTGGGGTGATCGTTTCGGCGTGGTTGGGCTGCTGCTG
CTGGTGCTGCTACTGCCGGTGGAGCTGCAGCTGCAGTCCGCATCGCGTTC
CTCCTCCTCTTCTTCCGCGTCGGCGTGGTACGAGGAGTCGAGAAGGTCCT
CATCATAGTCGCTTGTGGGTTCTTCGTTTAAGATCTGCTCTTTATGCGAG
GGTTGCGCGAAGAGTTTGCGCTGCAGAAAACTCTTCATGCTGTCGTAGAC
CCTGTGCGTGCGACTCTGGATCGGTTCCTGTTTATCCATTT
BO09487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-PA | 1137 | CG10479-RA | 212..1134 | 941..19 | 4590 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-RA | 1673 | CG10479-RA | 482..1404 | 941..19 | 4600 | 99.9 | Minus |
CG10479-RB | 1676 | CG10479-RB | 482..1407 | 941..19 | 4560 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5967814..5968595 | 19..800 | 3910 | 100 | Plus |
3L | 28110227 | 3L | 5968813..5968956 | 798..941 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:41:46 has no hits.
BO09487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:11 Download gff for
BO09487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-PA | 212..1137 | 18..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:38 Download gff for
BO09487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-PA | 212..1137 | 18..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:08:39 Download gff for
BO09487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 482..1404 | 19..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:02 Download gff for
BO09487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 482..1404 | 19..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:02 Download gff for
BO09487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5967814..5968593 | 19..798 | 100 | <- | Plus |
3L | 5968814..5968956 | 799..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:08:39 Download gff for
BO09487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5960914..5961693 | 19..798 | 100 | <- | Plus |
arm_3L | 5961914..5962056 | 799..941 | 99 | | Plus |
BO09487.5prime Sequence
885 bp (719 high quality bases) assembled on 2006-01-23
> BO09487.5prime
GAAGTTATCAGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCG
CCACGGATGGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAG
AACAAAATGCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTA
TGGTCAGTACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCA
ACAAGCTGCAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATC
CAGAGTCGCACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCG
CAAACTCTTCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAAC
CCACAAGCGACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGAC
GCGGAAGAAGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCAC
CGGCAGTAGCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCAC
CCCAAAAGTCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGC
AGTGACTCCAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTC
CGACGCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCA
ACACCATGAGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATC
AGCGCCAACCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCT
GGCGTGTCCCTGGTATCAGCCCAGGATCACGGCCAAGGCAGCTTTGGAGC
ACCTGCAGCAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCG
CGACATTTCGAACTGGTCCTGCGACTCGAGAGGAA
BO09487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-PA | 1137 | CG10479-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-RA | 1673 | CG10479-RA | 271..1139 | 17..885 | 4345 | 100 | Plus |
CG10479-RB | 1676 | CG10479-RB | 271..1142 | 17..885 | 4305 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5968079..5968595 | 885..369 | 2585 | 100 | Minus |
3L | 28110227 | 3L | 5968813..5969075 | 371..109 | 1315 | 100 | Minus |
3L | 28110227 | 3L | 5975645..5975737 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:19:37 has no hits.
BO09487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:12 Download gff for
BO09487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:39 Download gff for
BO09487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:16 Download gff for
BO09487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 266..1139 | 10..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:07:29 Download gff for
BO09487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 266..1139 | 10..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:07:29 Download gff for
BO09487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5968079..5968593 | 371..885 | 100 | <- | Minus |
3L | 5968814..5969074 | 110..370 | 100 | <- | Minus |
3L | 5975645..5975742 | 10..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:16 Download gff for
BO09487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5961179..5961693 | 371..885 | 100 | <- | Minus |
arm_3L | 5961914..5962174 | 110..370 | 100 | <- | Minus |
arm_3L | 5968745..5968842 | 10..109 | 96 | | Minus |
BO09487.complete Sequence
1168 bp (1168 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631513
> BO09487.complete
GAAGTTATCAGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCG
CCACGGATGGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAG
AACAAAATGCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTA
TGGTCAGTACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCA
ACAAGCTGCAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATC
CAGAGTCGCACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCG
CAAACTCTTCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAAC
CCACAAGCGACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGAC
GCGGAAGAAGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCAC
CGGCAGTAGCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCAC
CCCAAAAGTCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGC
AGTGACTCCAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTC
CGACGCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCA
ACACCATGAGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATC
AGCGCCAACCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCT
GGCGTGTCCCTGGTATCAGCCCAGGATCACGGCCAAGGCAGCTTTGGAGC
ACCTGCAGCAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCG
CGACATTTCGAACTGGTCCTGCGACTCGAGAGGAACAACAAGGTCAAGAC
CTATCCCGTGCAGTCCACCCGGAACCAGATGTACCGCCTGAAGGGAGCCA
AGAAACAGTTCACCAGCCTGAAAGCGCTGATCACCCACCACTCCGTGATG
GCCGAACAACTGCCATTGGTATTGGATATGCCCAGGGAGCGTCATGTGGT
GAAGCCCTCATCAGTGCGCTATGCAGATGACTTCGAGCCGCTGGAGTCCC
TGCAGCTACTCGGCATCCTGAGGAGTCTGCAGGCGAAAAGCATTGAGATA
GCAAGCTTTCTAGACCAT
BO09487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-RA | 1137 | CG10479-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
CG10479-RB | 1140 | CG10479-PB | 1..1137 | 17..1150 | 5605 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-RA | 1673 | CG10479-RA | 271..1404 | 17..1150 | 5670 | 100 | Plus |
CG10479-RB | 1676 | CG10479-RB | 271..1407 | 17..1150 | 5605 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5967814..5968595 | 1150..369 | 3910 | 100 | Minus |
3L | 28110227 | 3L | 5968813..5969075 | 371..109 | 1315 | 100 | Minus |
3L | 28110227 | 3L | 5975645..5975737 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:49:53 has no hits.
BO09487.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:22 Download gff for
BO09487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 1..1137 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:51 Download gff for
BO09487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 264..1402 | 10..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:51 Download gff for
BO09487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 271..1404 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:22 Download gff for
BO09487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 264..1402 | 10..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:32 Download gff for
BO09487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10479-RA | 271..1404 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:32 Download gff for
BO09487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5967812..5968593 | 371..1152 | 99 | <- | Minus |
3L | 5968814..5969074 | 110..370 | 100 | <- | Minus |
3L | 5975645..5975737 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:51 Download gff for
BO09487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5960912..5961693 | 371..1152 | 99 | <- | Minus |
arm_3L | 5961914..5962174 | 110..370 | 100 | <- | Minus |
arm_3L | 5968745..5968837 | 17..109 | 100 | | Minus |
BO09487.pep Sequence
Translation from 16 to 1168
> BO09487.pep
MGRLFQYNRFGATDGINKNTSKKDTQQKNKMLRNAIKCPGYSDIYGQYNK
DSSFEKCDEWSNKLQFPAAGEMDKQEPIQSRTHKVYDSMKSFLQRKLFAQ
PSHKEQILNEEPTSDYDEDLLDSSYHADAEEEEEERDADCSCSSTGSSST
SSSSPTTPKRSPQKSLLSLNCWQSSQPSSDSNPEEEQDEEAEEDSDAGIS
DCCQLLAENSPNTMSKRRRAAPLFTRYISANQNSDDDEDEEPELLACPWY
QPRITAKAALEHLQQATPGSFLLRRSTPRHFELVLRLERNNKVKTYPVQS
TRNQMYRLKGAKKQFTSLKALITHHSVMAEQLPLVLDMPRERHVVKPSSV
RYADDFEPLESLQLLGILRSLQAKSIEIASFLDH
BO09487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10479-PA | 378 | CG10479-PA | 1..378 | 1..378 | 1971 | 100 | Plus |
CG10479-PB | 379 | CG10479-PB | 1..379 | 1..378 | 1959 | 99.7 | Plus |
PVRAP-PA | 474 | CG32406-PA | 331..469 | 238..377 | 241 | 44.1 | Plus |
CG33993-PB | 258 | CG33993-PB | 114..216 | 240..340 | 189 | 44.2 | Plus |
CG33993-PA | 421 | CG33993-PA | 277..379 | 240..340 | 189 | 44.2 | Plus |