Clone BO09487 Report

Search the DGRC for BO09487

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG10479-RA
Protein status:BO09487.pep: validated full length
Sequenced Size:1168

Clone Sequence Records

BO09487.3prime Sequence

941 bp (859 high quality bases) assembled on 2006-01-23

> BO09487.3prime
ATGGTCTAGAAAGCTTGCTATCTCAATGCTTTTCGCCTGCAGACTCCTCA
GGATGCCGAGTAGCTGCAGGGACTCCAGCGGCTCGAAGTCATCTGCATAG
CGCACTGATGAGGGCTTCACCACATGACGCTCCCTGGGCATATCCAATAC
CAATGGCAGTTGTTCGGCCATCACGGAGTGGTGGGTGATCAGCGCTTTCA
GGCTGGTGAACTGTTTCTTGGCTCCCTTCAGGCGGTACATCTGGTTCCGG
GTGGACTGCACGGGATAGGTCTTGACCTTGTTGTTCCTCTCGAGTCGCAG
GACCAGTTCGAAATGTCGCGGCGTACTGCGTCGCAGAAGAAAGCTTCCAG
GTGTGGCCTGCTGCAGGTGCTCCAAAGCTGCCTTGGCCGTGATCCTGGGC
TGATACCAGGGACACGCCAGGAGCTCCGGCTCCTCGTCCTCATCATCGTC
GGAGTTCTGGTTGGCGCTGATGTATCTGGTGAATAGAGGTGCAGCTCGAC
GGCGTTTGCTCATGGTGTTGGGGGAATTCTCAGCTAAGAGTTGACAGCAA
TCGGAGATTCCAGCGTCGGAGTCCTCTTCTGCCTCCTCATCCTGCTCCTC
TTCGGGATTGGAGTCACTGCTTGGCTGACTGCTCTGCCAGCAGTTGAGGG
ACAGCAGGGACTTTTGGGGTGATCGTTTCGGCGTGGTTGGGCTGCTGCTG
CTGGTGCTGCTACTGCCGGTGGAGCTGCAGCTGCAGTCCGCATCGCGTTC
CTCCTCCTCTTCTTCCGCGTCGGCGTGGTACGAGGAGTCGAGAAGGTCCT
CATCATAGTCGCTTGTGGGTTCTTCGTTTAAGATCTGCTCTTTATGCGAG
GGTTGCGCGAAGAGTTTGCGCTGCAGAAAACTCTTCATGCTGTCGTAGAC
CCTGTGCGTGCGACTCTGGATCGGTTCCTGTTTATCCATTT

BO09487.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-PA 1137 CG10479-RA 212..1134 941..19 4590 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1673 CG10479-RA 482..1404 941..19 4600 99.9 Minus
CG10479-RB 1676 CG10479-RB 482..1407 941..19 4560 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5967814..5968595 19..800 3910 100 Plus
3L 28110227 3L 5968813..5968956 798..941 705 99.3 Plus
Blast to na_te.dros performed on 2015-01-31 14:41:46 has no hits.

BO09487.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:11 Download gff for BO09487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-PA 212..1137 18..941 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:38 Download gff for BO09487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-PA 212..1137 18..941 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:08:39 Download gff for BO09487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 482..1404 19..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:02 Download gff for BO09487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 482..1404 19..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:02 Download gff for BO09487.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5967814..5968593 19..798 100 <- Plus
3L 5968814..5968956 799..941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:08:39 Download gff for BO09487.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5960914..5961693 19..798 100 <- Plus
arm_3L 5961914..5962056 799..941 99   Plus

BO09487.5prime Sequence

885 bp (719 high quality bases) assembled on 2006-01-23

> BO09487.5prime
GAAGTTATCAGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCG
CCACGGATGGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAG
AACAAAATGCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTA
TGGTCAGTACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCA
ACAAGCTGCAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATC
CAGAGTCGCACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCG
CAAACTCTTCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAAC
CCACAAGCGACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGAC
GCGGAAGAAGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCAC
CGGCAGTAGCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCAC
CCCAAAAGTCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGC
AGTGACTCCAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTC
CGACGCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCA
ACACCATGAGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATC
AGCGCCAACCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCT
GGCGTGTCCCTGGTATCAGCCCAGGATCACGGCCAAGGCAGCTTTGGAGC
ACCTGCAGCAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCG
CGACATTTCGAACTGGTCCTGCGACTCGAGAGGAA

BO09487.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-PA 1137 CG10479-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1673 CG10479-RA 271..1139 17..885 4345 100 Plus
CG10479-RB 1676 CG10479-RB 271..1142 17..885 4305 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5968079..5968595 885..369 2585 100 Minus
3L 28110227 3L 5968813..5969075 371..109 1315 100 Minus
3L 28110227 3L 5975645..5975737 109..17 465 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:19:37 has no hits.

BO09487.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:12 Download gff for BO09487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:39 Download gff for BO09487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:16 Download gff for BO09487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 266..1139 10..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:07:29 Download gff for BO09487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 266..1139 10..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:07:29 Download gff for BO09487.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5968079..5968593 371..885 100 <- Minus
3L 5968814..5969074 110..370 100 <- Minus
3L 5975645..5975742 10..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:16 Download gff for BO09487.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5961179..5961693 371..885 100 <- Minus
arm_3L 5961914..5962174 110..370 100 <- Minus
arm_3L 5968745..5968842 10..109 96   Minus

BO09487.complete Sequence

1168 bp (1168 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631513

> BO09487.complete
GAAGTTATCAGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCG
CCACGGATGGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAG
AACAAAATGCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTA
TGGTCAGTACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCA
ACAAGCTGCAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATC
CAGAGTCGCACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCG
CAAACTCTTCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAAC
CCACAAGCGACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGAC
GCGGAAGAAGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCAC
CGGCAGTAGCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCAC
CCCAAAAGTCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGC
AGTGACTCCAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTC
CGACGCTGGAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCA
ACACCATGAGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATC
AGCGCCAACCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCT
GGCGTGTCCCTGGTATCAGCCCAGGATCACGGCCAAGGCAGCTTTGGAGC
ACCTGCAGCAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCG
CGACATTTCGAACTGGTCCTGCGACTCGAGAGGAACAACAAGGTCAAGAC
CTATCCCGTGCAGTCCACCCGGAACCAGATGTACCGCCTGAAGGGAGCCA
AGAAACAGTTCACCAGCCTGAAAGCGCTGATCACCCACCACTCCGTGATG
GCCGAACAACTGCCATTGGTATTGGATATGCCCAGGGAGCGTCATGTGGT
GAAGCCCTCATCAGTGCGCTATGCAGATGACTTCGAGCCGCTGGAGTCCC
TGCAGCTACTCGGCATCCTGAGGAGTCTGCAGGCGAAAAGCATTGAGATA
GCAAGCTTTCTAGACCAT

BO09487.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1137 CG10479-PA 1..1134 17..1150 5670 100 Plus
CG10479-RB 1140 CG10479-PB 1..1137 17..1150 5605 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-RA 1673 CG10479-RA 271..1404 17..1150 5670 100 Plus
CG10479-RB 1676 CG10479-RB 271..1407 17..1150 5605 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5967814..5968595 1150..369 3910 100 Minus
3L 28110227 3L 5968813..5969075 371..109 1315 100 Minus
3L 28110227 3L 5975645..5975737 109..17 465 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:49:53 has no hits.

BO09487.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:22 Download gff for BO09487.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 1..1137 17..1151 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:51 Download gff for BO09487.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 264..1402 10..1150 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:51 Download gff for BO09487.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 271..1404 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:22 Download gff for BO09487.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 264..1402 10..1150 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:32 Download gff for BO09487.complete
Subject Subject Range Query Range Percent Splice Strand
CG10479-RA 271..1404 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:32 Download gff for BO09487.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5967812..5968593 371..1152 99 <- Minus
3L 5968814..5969074 110..370 100 <- Minus
3L 5975645..5975737 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:51 Download gff for BO09487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5960912..5961693 371..1152 99 <- Minus
arm_3L 5961914..5962174 110..370 100 <- Minus
arm_3L 5968745..5968837 17..109 100   Minus

BO09487.pep Sequence

Translation from 16 to 1168

> BO09487.pep
MGRLFQYNRFGATDGINKNTSKKDTQQKNKMLRNAIKCPGYSDIYGQYNK
DSSFEKCDEWSNKLQFPAAGEMDKQEPIQSRTHKVYDSMKSFLQRKLFAQ
PSHKEQILNEEPTSDYDEDLLDSSYHADAEEEEEERDADCSCSSTGSSST
SSSSPTTPKRSPQKSLLSLNCWQSSQPSSDSNPEEEQDEEAEEDSDAGIS
DCCQLLAENSPNTMSKRRRAAPLFTRYISANQNSDDDEDEEPELLACPWY
QPRITAKAALEHLQQATPGSFLLRRSTPRHFELVLRLERNNKVKTYPVQS
TRNQMYRLKGAKKQFTSLKALITHHSVMAEQLPLVLDMPRERHVVKPSSV
RYADDFEPLESLQLLGILRSLQAKSIEIASFLDH

BO09487.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10479-PA 378 CG10479-PA 1..378 1..378 1971 100 Plus
CG10479-PB 379 CG10479-PB 1..379 1..378 1959 99.7 Plus
PVRAP-PA 474 CG32406-PA 331..469 238..377 241 44.1 Plus
CG33993-PB 258 CG33993-PB 114..216 240..340 189 44.2 Plus
CG33993-PA 421 CG33993-PA 277..379 240..340 189 44.2 Plus