Clone Sequence Records
BO09488.3prime Sequence
872 bp (844 high quality bases) assembled on 2006-01-23
> BO09488.3prime
ATGGTCTAGAAAGCTTGCGTGGGACTTTGCTGCCTGGCGGAGTCGCTCCA
ATGCGGCCTGCTCCTCGCGCTCCTCCTCCTCGGCGAGCTCCACCTCGTGC
TCCAGCATATGGATCTGCTCGGTCAGCTCCTTGGGCATCTCCTCCAGATG
GATCGCCTTGATCTGCGCCTTAAGGTCCTTGGTCATGTGATTGATGCGGA
AGCCGCGATGGTCGAACTGAGCCCCACCGTTGATCTTGTGCTGCTCCTCC
ACGTACTTGAGGGCACGGACAATGGCATCGGGGATCGGGTGAATGTGGTC
TCCCTGGGGCATGAAGCCGCCATCGTTGGAGGCGTAGTTTACGCGATAAA
GCTTGCCATCGTCACCGGTGTACTCATAGAATCCCTTGGCATGTGTGCCT
CCGGTGTGGTGAAGCTTGGCCTGCTCCTCGCCATAGATTCCATTCTCAGT
CAGGTAAGAGTGATCGTATTTGTCCTGTTTGCGGACCTCTTCCTTGTGCA
GGATCTTGTGGCGACCCTCATCATCGTAGTTGAACAGAATATTGCGGGGC
GTGGTGGTGGTGGTGGTGGTCGAGGTTGTCGTCCTTTTGGTGGTCGTGGT
TGGTTTCTTGGTGGTCGTGCTTGTGTACAGGTCGTGGTTGTAAGGCCTGT
CGTCATGGACATAGGGAATATTCGAACCAGCGTAGGGTCCATAGCCTCCG
TCATAGGGATAGGGAATGTGATGGTATTTTCCAAGCTCACGCTGATCGCT
CACATGTCTGTAGGGAATCGGCATGTGATGATAGCGACCTATACTTTCTT
GCGAACCACTCCGGCCATTATTATCCGGAACGGGACTGGCGTGGCAGACA
ACGAAGAGGGCCACGACCAGGG
BO09488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8502-PA | 885 | CG8502-RA | 29..882 | 872..19 | 4270 | 100 | Minus |
CG8502-PC | 975 | CG8502-RC | 175..972 | 816..19 | 3990 | 100 | Minus |
CG8502-PC | 975 | CG8502-RC | 29..87 | 872..814 | 295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RA | 1344 | CG8502-RA | 126..979 | 872..19 | 4270 | 100 | Minus |
Cpr49Ac-RC | 1434 | CG8502-RC | 272..1069 | 816..19 | 3990 | 100 | Minus |
Cpr49Ac-RG | 1701 | CG8502-RG | 565..1336 | 790..19 | 3860 | 100 | Minus |
Cpr49Ac-RC | 1434 | CG8502-RC | 126..184 | 872..814 | 295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389692 | 457..19 | 2195 | 100 | Minus |
2R | 25286936 | 2R | 12388923..12389086 | 621..458 | 820 | 100 | Minus |
2R | 25286936 | 2R | 12388298..12388450 | 790..638 | 765 | 100 | Minus |
2R | 25286936 | 2R | 12387381..12387429 | 862..814 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:17:59 has no hits.
BO09488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:13 Download gff for
BO09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PA | 29..885 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:41 Download gff for
BO09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PA | 29..885 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:26:17 Download gff for
BO09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 126..990 | 6..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:41 Download gff for
BO09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 126..990 | 6..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:41 Download gff for
BO09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12387381..12387427 | 816..862 | 100 | -> | Minus |
2R | 12387913..12387939 | 789..815 | 100 | -> | Minus |
2R | 12388923..12389086 | 458..621 | 100 | -> | Minus |
2R | 12388300..12388450 | 638..788 | 100 | -> | Minus |
2R | 12388518..12388533 | 622..637 | 100 | -> | Minus |
2R | 12389254..12389703 | 6..457 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:26:17 Download gff for
BO09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8274886..8274932 | 816..862 | 100 | -> | Minus |
arm_2R | 8275418..8275444 | 789..815 | 100 | -> | Minus |
arm_2R | 8275805..8275955 | 638..788 | 100 | -> | Minus |
arm_2R | 8276023..8276038 | 622..637 | 100 | -> | Minus |
arm_2R | 8276428..8276591 | 458..621 | 100 | -> | Minus |
arm_2R | 8276759..8277208 | 6..457 | 98 | | Minus |
BO09488.5prime Sequence
864 bp (773 high quality bases) assembled on 2006-01-23
> BO09488.5prime
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGAT
TCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACA
TTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATT
CCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCAC
GACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCA
CCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAG
GGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATA
CGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCA
AGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACC
GGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGG
CTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCC
GTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAG
TTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGC
GCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGC
AGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGC
GAGGAGCANGCCGC
BO09488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8502-PA | 885 | CG8502-RA | 1..848 | 17..864 | 4221 | 99.8 | Plus |
CG8502-PC | 975 | CG8502-RC | 175..938 | 101..864 | 3801 | 99.8 | Plus |
CG8502-PC | 975 | CG8502-RC | 1..87 | 17..103 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RA | 1344 | CG8502-RA | 96..945 | 15..864 | 4239 | 99.9 | Plus |
Cpr49Ac-RC | 1434 | CG8502-RC | 272..1035 | 101..864 | 3809 | 99.9 | Plus |
Cpr49Ac-RE | 1317 | CG8502-RE | 96..918 | 15..864 | 3784 | 96.7 | Plus |
Cpr49Ac-RC | 1434 | CG8502-RC | 96..184 | 15..103 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389658 | 460..864 | 2014 | 99.8 | Plus |
2R | 25286936 | 2R | 12388923..12389086 | 296..459 | 820 | 100 | Plus |
2R | 25286936 | 2R | 12388298..12388450 | 127..279 | 765 | 100 | Plus |
2R | 25286936 | 2R | 12387381..12387429 | 55..103 | 245 | 100 | Plus |
2R | 25286936 | 2R | 12387055..12387096 | 15..56 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:14:07 has no hits.
BO09488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:14 Download gff for
BO09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:42 Download gff for
BO09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8502-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:44 Download gff for
BO09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 91..945 | 10..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:06:52 Download gff for
BO09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 91..945 | 10..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:06:52 Download gff for
BO09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12387050..12387095 | 10..55 | 95 | -> | Plus |
2R | 12387382..12387427 | 56..101 | 100 | -> | Plus |
2R | 12387913..12387939 | 102..128 | 100 | -> | Plus |
2R | 12388300..12388450 | 129..279 | 100 | -> | Plus |
2R | 12388518..12388533 | 280..295 | 100 | -> | Plus |
2R | 12388923..12389086 | 296..459 | 100 | -> | Plus |
2R | 12389254..12389658 | 460..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:44 Download gff for
BO09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8274555..8274600 | 10..55 | 95 | -> | Plus |
arm_2R | 8274887..8274932 | 56..101 | 100 | -> | Plus |
arm_2R | 8275418..8275444 | 102..128 | 100 | -> | Plus |
arm_2R | 8275805..8275955 | 129..279 | 100 | -> | Plus |
arm_2R | 8276023..8276038 | 280..295 | 100 | -> | Plus |
arm_2R | 8276428..8276591 | 296..459 | 100 | -> | Plus |
arm_2R | 8276759..8277163 | 460..864 | 99 | | Plus |
BO09488.complete Sequence
916 bp (916 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631514
> BO09488.complete
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGAT
TCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACA
TTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATT
CCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCAC
GACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCA
CCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAG
GGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATA
CGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCA
AGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACC
GGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGG
CTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCC
GTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAG
TTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGC
GCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGC
AGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGC
GAGGAGCAGGCCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCACGC
AAGCTTTCTAGACCAT
BO09488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RA | 885 | CG8502-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Cpr49Ac-RC | 975 | CG8502-PC | 175..972 | 101..898 | 3990 | 100 | Plus |
Cpr49Ac-RG | 948 | CG8502-PG | 174..945 | 127..898 | 3860 | 100 | Plus |
Cpr49Ac-RC | 975 | CG8502-PC | 1..87 | 17..103 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-RA | 1344 | CG8502-RA | 96..979 | 15..898 | 4420 | 100 | Plus |
Cpr49Ac-RC | 1434 | CG8502-RC | 272..1069 | 101..898 | 3990 | 100 | Plus |
Cpr49Ac-RG | 1701 | CG8502-RG | 565..1336 | 127..898 | 3860 | 100 | Plus |
Cpr49Ac-RC | 1434 | CG8502-RC | 96..184 | 15..103 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12389254..12389692 | 460..898 | 2195 | 100 | Plus |
2R | 25286936 | 2R | 12388923..12389086 | 296..459 | 820 | 100 | Plus |
2R | 25286936 | 2R | 12388298..12388450 | 127..279 | 765 | 100 | Plus |
2R | 25286936 | 2R | 12387381..12387429 | 55..103 | 245 | 100 | Plus |
2R | 25286936 | 2R | 12387055..12387096 | 15..56 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:56:37 has no hits.
BO09488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:23 Download gff for
BO09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 1..885 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:53 Download gff for
BO09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 72..971 | 10..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:01 Download gff for
BO09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 103..979 | 22..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:23 Download gff for
BO09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 72..971 | 10..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:23 Download gff for
BO09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ac-RA | 103..979 | 22..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:23 Download gff for
BO09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12388923..12389086 | 296..459 | 100 | -> | Plus |
2R | 12387382..12387427 | 56..101 | 100 | -> | Plus |
2R | 12387913..12387939 | 102..128 | 100 | -> | Plus |
2R | 12388300..12388450 | 129..279 | 100 | -> | Plus |
2R | 12388518..12388533 | 280..295 | 100 | -> | Plus |
2R | 12387062..12387095 | 22..55 | 100 | -> | Plus |
2R | 12389254..12389692 | 460..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:01 Download gff for
BO09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8274567..8274600 | 22..55 | 100 | -> | Plus |
arm_2R | 8274887..8274932 | 56..101 | 100 | -> | Plus |
arm_2R | 8275418..8275444 | 102..128 | 100 | -> | Plus |
arm_2R | 8275805..8275955 | 129..279 | 100 | -> | Plus |
arm_2R | 8276023..8276038 | 280..295 | 100 | -> | Plus |
arm_2R | 8276428..8276591 | 296..459 | 100 | -> | Plus |
arm_2R | 8276759..8277197 | 460..900 | 99 | | Plus |
BO09488.pep Sequence
Translation from 16 to 916
> BO09488.pep
MFTKSMLSFSLVVALFVVCHASPVPDNNGRSGSQESIGRYHHMPIPYRHV
SDQRELGKYHHIPYPYDGGYGPYAGSNIPYVHDDRPYNHDLYTSTTTKKP
TTTTKRTTTSTTTTTTTPRNILFNYDDEGRHKILHKEEVRKQDKYDHSYL
TENGIYGEEQAKLHHTGGTHAKGFYEYTGDDGKLYRVNYASNDGGFMPQG
DHIHPIPDAIVRALKYVEEQHKINGGAQFDHRGFRINHMTKDLKAQIKAI
HLEEMPKELTEQIHMLEHEVELAEEEEREEQAALERLRQAAKSHASFLDH
BO09488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ac-PA | 294 | CG8502-PA | 1..294 | 1..294 | 1594 | 100 | Plus |
Cpr49Ac-PC | 324 | CG8502-PC | 1..324 | 1..294 | 1553 | 90.7 | Plus |
Cpr49Ac-PG | 315 | CG8502-PG | 1..315 | 1..294 | 1533 | 91.1 | Plus |
Cpr49Ac-PF | 315 | CG8502-PF | 1..315 | 1..294 | 1533 | 91.1 | Plus |
Cpr49Ac-PE | 285 | CG8502-PE | 1..285 | 1..294 | 1531 | 96.9 | Plus |