Clone BO09488 Report

Search the DGRC for BO09488

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCpr49Ac-RA
Protein status:BO09488.pep: validated full length
Sequenced Size:916

Clone Sequence Records

BO09488.3prime Sequence

872 bp (844 high quality bases) assembled on 2006-01-23

> BO09488.3prime
ATGGTCTAGAAAGCTTGCGTGGGACTTTGCTGCCTGGCGGAGTCGCTCCA
ATGCGGCCTGCTCCTCGCGCTCCTCCTCCTCGGCGAGCTCCACCTCGTGC
TCCAGCATATGGATCTGCTCGGTCAGCTCCTTGGGCATCTCCTCCAGATG
GATCGCCTTGATCTGCGCCTTAAGGTCCTTGGTCATGTGATTGATGCGGA
AGCCGCGATGGTCGAACTGAGCCCCACCGTTGATCTTGTGCTGCTCCTCC
ACGTACTTGAGGGCACGGACAATGGCATCGGGGATCGGGTGAATGTGGTC
TCCCTGGGGCATGAAGCCGCCATCGTTGGAGGCGTAGTTTACGCGATAAA
GCTTGCCATCGTCACCGGTGTACTCATAGAATCCCTTGGCATGTGTGCCT
CCGGTGTGGTGAAGCTTGGCCTGCTCCTCGCCATAGATTCCATTCTCAGT
CAGGTAAGAGTGATCGTATTTGTCCTGTTTGCGGACCTCTTCCTTGTGCA
GGATCTTGTGGCGACCCTCATCATCGTAGTTGAACAGAATATTGCGGGGC
GTGGTGGTGGTGGTGGTGGTCGAGGTTGTCGTCCTTTTGGTGGTCGTGGT
TGGTTTCTTGGTGGTCGTGCTTGTGTACAGGTCGTGGTTGTAAGGCCTGT
CGTCATGGACATAGGGAATATTCGAACCAGCGTAGGGTCCATAGCCTCCG
TCATAGGGATAGGGAATGTGATGGTATTTTCCAAGCTCACGCTGATCGCT
CACATGTCTGTAGGGAATCGGCATGTGATGATAGCGACCTATACTTTCTT
GCGAACCACTCCGGCCATTATTATCCGGAACGGGACTGGCGTGGCAGACA
ACGAAGAGGGCCACGACCAGGG

BO09488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8502-PA 885 CG8502-RA 29..882 872..19 4270 100 Minus
CG8502-PC 975 CG8502-RC 175..972 816..19 3990 100 Minus
CG8502-PC 975 CG8502-RC 29..87 872..814 295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-RA 1344 CG8502-RA 126..979 872..19 4270 100 Minus
Cpr49Ac-RC 1434 CG8502-RC 272..1069 816..19 3990 100 Minus
Cpr49Ac-RG 1701 CG8502-RG 565..1336 790..19 3860 100 Minus
Cpr49Ac-RC 1434 CG8502-RC 126..184 872..814 295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12389254..12389692 457..19 2195 100 Minus
2R 25286936 2R 12388923..12389086 621..458 820 100 Minus
2R 25286936 2R 12388298..12388450 790..638 765 100 Minus
2R 25286936 2R 12387381..12387429 862..814 245 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:17:59 has no hits.

BO09488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:13 Download gff for BO09488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8502-PA 29..885 15..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:41 Download gff for BO09488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8502-PA 29..885 15..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:26:17 Download gff for BO09488.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 126..990 6..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:41 Download gff for BO09488.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 126..990 6..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:41 Download gff for BO09488.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12387381..12387427 816..862 100 -> Minus
2R 12387913..12387939 789..815 100 -> Minus
2R 12388923..12389086 458..621 100 -> Minus
2R 12388300..12388450 638..788 100 -> Minus
2R 12388518..12388533 622..637 100 -> Minus
2R 12389254..12389703 6..457 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:26:17 Download gff for BO09488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8274886..8274932 816..862 100 -> Minus
arm_2R 8275418..8275444 789..815 100 -> Minus
arm_2R 8275805..8275955 638..788 100 -> Minus
arm_2R 8276023..8276038 622..637 100 -> Minus
arm_2R 8276428..8276591 458..621 100 -> Minus
arm_2R 8276759..8277208 6..457 98   Minus

BO09488.5prime Sequence

864 bp (773 high quality bases) assembled on 2006-01-23

> BO09488.5prime
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGAT
TCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACA
TTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATT
CCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCAC
GACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCA
CCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAG
GGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATA
CGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCA
AGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACC
GGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGG
CTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCC
GTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAG
TTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGC
GCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGC
AGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGC
GAGGAGCANGCCGC

BO09488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8502-PA 885 CG8502-RA 1..848 17..864 4221 99.8 Plus
CG8502-PC 975 CG8502-RC 175..938 101..864 3801 99.8 Plus
CG8502-PC 975 CG8502-RC 1..87 17..103 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-RA 1344 CG8502-RA 96..945 15..864 4239 99.9 Plus
Cpr49Ac-RC 1434 CG8502-RC 272..1035 101..864 3809 99.9 Plus
Cpr49Ac-RE 1317 CG8502-RE 96..918 15..864 3784 96.7 Plus
Cpr49Ac-RC 1434 CG8502-RC 96..184 15..103 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12389254..12389658 460..864 2014 99.8 Plus
2R 25286936 2R 12388923..12389086 296..459 820 100 Plus
2R 25286936 2R 12388298..12388450 127..279 765 100 Plus
2R 25286936 2R 12387381..12387429 55..103 245 100 Plus
2R 25286936 2R 12387055..12387096 15..56 210 100 Plus
Blast to na_te.dros performed on 2015-02-10 02:14:07 has no hits.

BO09488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:14 Download gff for BO09488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8502-PA 1..848 17..864 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:42 Download gff for BO09488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8502-PA 1..848 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:44 Download gff for BO09488.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 91..945 10..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:06:52 Download gff for BO09488.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 91..945 10..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:06:52 Download gff for BO09488.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12387050..12387095 10..55 95 -> Plus
2R 12387382..12387427 56..101 100 -> Plus
2R 12387913..12387939 102..128 100 -> Plus
2R 12388300..12388450 129..279 100 -> Plus
2R 12388518..12388533 280..295 100 -> Plus
2R 12388923..12389086 296..459 100 -> Plus
2R 12389254..12389658 460..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:44 Download gff for BO09488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8274555..8274600 10..55 95 -> Plus
arm_2R 8274887..8274932 56..101 100 -> Plus
arm_2R 8275418..8275444 102..128 100 -> Plus
arm_2R 8275805..8275955 129..279 100 -> Plus
arm_2R 8276023..8276038 280..295 100 -> Plus
arm_2R 8276428..8276591 296..459 100 -> Plus
arm_2R 8276759..8277163 460..864 99   Plus

BO09488.complete Sequence

916 bp (916 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631514

> BO09488.complete
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCCGGAGTGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGAT
TCCCTACAGACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACA
TTCCCTATCCCTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATT
CCCTATGTCCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCAC
GACCACCAAGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCA
CCACCACCACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAG
GGTCGCCACAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATA
CGATCACTCTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCA
AGCTTCACCACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACC
GGTGACGATGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGG
CTTCATGCCCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCC
GTGCCCTCAAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAG
TTCGACCATCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGC
GCAGATCAAGGCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGC
AGATCCATATGCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGC
GAGGAGCAGGCCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCACGC
AAGCTTTCTAGACCAT

BO09488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-RA 885 CG8502-PA 1..882 17..898 4410 100 Plus
Cpr49Ac-RC 975 CG8502-PC 175..972 101..898 3990 100 Plus
Cpr49Ac-RG 948 CG8502-PG 174..945 127..898 3860 100 Plus
Cpr49Ac-RC 975 CG8502-PC 1..87 17..103 435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-RA 1344 CG8502-RA 96..979 15..898 4420 100 Plus
Cpr49Ac-RC 1434 CG8502-RC 272..1069 101..898 3990 100 Plus
Cpr49Ac-RG 1701 CG8502-RG 565..1336 127..898 3860 100 Plus
Cpr49Ac-RC 1434 CG8502-RC 96..184 15..103 445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12389254..12389692 460..898 2195 100 Plus
2R 25286936 2R 12388923..12389086 296..459 820 100 Plus
2R 25286936 2R 12388298..12388450 127..279 765 100 Plus
2R 25286936 2R 12387381..12387429 55..103 245 100 Plus
2R 25286936 2R 12387055..12387096 15..56 210 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:56:37 has no hits.

BO09488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:23 Download gff for BO09488.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 1..885 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:53 Download gff for BO09488.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 72..971 10..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:01 Download gff for BO09488.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 103..979 22..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:23 Download gff for BO09488.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 72..971 10..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:23 Download gff for BO09488.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr49Ac-RA 103..979 22..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:23 Download gff for BO09488.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12388923..12389086 296..459 100 -> Plus
2R 12387382..12387427 56..101 100 -> Plus
2R 12387913..12387939 102..128 100 -> Plus
2R 12388300..12388450 129..279 100 -> Plus
2R 12388518..12388533 280..295 100 -> Plus
2R 12387062..12387095 22..55 100 -> Plus
2R 12389254..12389692 460..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:01 Download gff for BO09488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8274567..8274600 22..55 100 -> Plus
arm_2R 8274887..8274932 56..101 100 -> Plus
arm_2R 8275418..8275444 102..128 100 -> Plus
arm_2R 8275805..8275955 129..279 100 -> Plus
arm_2R 8276023..8276038 280..295 100 -> Plus
arm_2R 8276428..8276591 296..459 100 -> Plus
arm_2R 8276759..8277197 460..900 99   Plus

BO09488.pep Sequence

Translation from 16 to 916

> BO09488.pep
MFTKSMLSFSLVVALFVVCHASPVPDNNGRSGSQESIGRYHHMPIPYRHV
SDQRELGKYHHIPYPYDGGYGPYAGSNIPYVHDDRPYNHDLYTSTTTKKP
TTTTKRTTTSTTTTTTTPRNILFNYDDEGRHKILHKEEVRKQDKYDHSYL
TENGIYGEEQAKLHHTGGTHAKGFYEYTGDDGKLYRVNYASNDGGFMPQG
DHIHPIPDAIVRALKYVEEQHKINGGAQFDHRGFRINHMTKDLKAQIKAI
HLEEMPKELTEQIHMLEHEVELAEEEEREEQAALERLRQAAKSHASFLDH

BO09488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr49Ac-PA 294 CG8502-PA 1..294 1..294 1594 100 Plus
Cpr49Ac-PC 324 CG8502-PC 1..324 1..294 1553 90.7 Plus
Cpr49Ac-PG 315 CG8502-PG 1..315 1..294 1533 91.1 Plus
Cpr49Ac-PF 315 CG8502-PF 1..315 1..294 1533 91.1 Plus
Cpr49Ac-PE 285 CG8502-PE 1..285 1..294 1531 96.9 Plus