Clone Sequence Records
BO09490.3prime Sequence
924 bp (777 high quality bases) assembled on 2006-01-23
> BO09490.3prime
ATGGTCTAGAAAGCTTGCAACTTTGGCATCCACATGCAGGGCCAGTACAC
CGTCGAAGTCATCGGATCCGATGTGTATATAGCCATAGCCATTCTCGTTC
ACAGTGACCGATTTGCCGGTGCAGGATCCGTCGATCAGGCTGCCGGAAAT
CACATCGCAGTAGGTTCCGGCAGGCAGACAGGTATTCAGATCCTGCGACA
AATCGTACAGGTTGTTGTTGATAGCCAGGAAGCCCTTGTTGCCGCGACAG
AAGGAGATCTGGTTGTCTCCATTGTCCCACCAGCCGGTGATCTCCGTATC
CCGAACGGCGTTCTTGAAGCCCACCATCGCGTAGATCTGACGCCAACGAT
GCTCGCAAATCCAGCCATTCACACAGGCTCCATCCGCATCGAACTCGGGT
GAAATTATTCTCTCCTGCGCATCCTGCGGCGGCGGGGTATCGTGGTCATC
GAAGGCGAATGAGCTCATCACCCGACTGATGCCGTAGGGATAGGCCAAAT
GGAAGGCGGTTGCCATTTTGTACTGCCTGGGGGACTTGTAGTTCAGCACG
GCACCCGCGTCTCGCTGGTTATCGTGGTTGTCCACAAAGGTCAAGGCCTG
ACCCGAGGGCAAGAATCCCCAATCGGTTCCCCAGCTCTGCAGCCATTTCA
GTGCGTTGTTGCCACGGAAGGCGTTGCCAATCTCCTCGGAGAATCGGAAC
TCGGTGACGGCACCCAGATCCTTGTACTCATCACGGGAGACGGTTTCGTG
ACCGTGATCAATTACCTCCTGGAAGATGAAGGGACGGGAGTTGTGAGGAA
AGCCGTGATCGATGTTCAGGTTGCTCANGCTGCTGTAGATGTACTCTAGA
TCTTCCGATGCCATATGCTTGGCGGCATCCACCCGGAAGCCAGCAACACC
CAGTTCGATGAGGTGATCCAGGAA
BO09490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8221-PA | 1482 | Amyrel-RA | 574..1479 | 924..19 | 4511 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amyrel-RA | 1549 | CG8221-RA | 576..1481 | 924..19 | 4519 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16651163..16651989 | 19..845 | 4124 | 99.9 | Plus |
| 2R | 25286936 | 2R | 16652044..16652124 | 844..924 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:48:17 has no hits.
BO09490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:17 Download gff for
BO09490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8221-PA | 576..1482 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:46 Download gff for
BO09490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8221-PA | 576..1482 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:31:03 Download gff for
BO09490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 576..1485 | 14..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:04 Download gff for
BO09490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 576..1485 | 14..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:04 Download gff for
BO09490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16651159..16651987 | 14..843 | 99 | <- | Plus |
| 2R | 16652044..16652124 | 844..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:31:03 Download gff for
BO09490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12538664..12539492 | 14..843 | 99 | <- | Plus |
| arm_2R | 12539549..12539629 | 844..924 | 100 | | Plus |
BO09490.5prime Sequence
825 bp (743 high quality bases) assembled on 2006-01-23
> BO09490.5prime
GAAGTTATCAGTCGACATGTTCAAGTTCGCTTTGACCCTGACGCTCTGCT
TGGCGGGCAGCCTTTCGCTGGCCCAGCACAATCCCCATTGGTGGGGCAAT
CGCAACACCATCGTCCACTTGTTCGAGTGGAAGTGGTCGGACATTGCCCA
GGAGTGTGAGAGTTTTCTCGGACCTCGAGGATTCGCCGGCGTTCAAGTGA
GCCCCGTTAATGAGAACATCTTATCGGCGGGTCGTCCGTGGTGGGAGCGA
TATCAACCCATCTCGTACAAGCTGACCACTCGGTCTGGTAATGAGGAGGA
ATTTGGTGACATGGTCCGTCGTTGCAACGATGTGGGTGTTCGTATCTATG
TGGATGTGCTGTTGAACCACATGTCCGGAGATTTTGACGGTGTGGCTGTG
GGCACTGCTGGAACAGAGGCGGAACCCAGTAAGAAATCCTTCCCAGGAGT
TCCATACACCGCACAGGACTTCCATCCCACCTGCGAGATTACCGACTGGA
ACGATCGCTTCCAGGTGCAACAGTGCGAACTGGTTGGCCTCAAGGATCTT
GACCAGAGCAGCGACTGGGTGAGGAGCAAGCTAATTGAGTTCCTGGATCA
CCTCATCGAACTGGGTGTTGCTGGCTTCCGGGTGGATGCCGCCAAGCATA
TGGCATCGGAAGATCTAGAGTACATCTACAGCAGCCTGAGCAACCTGAAC
ATCGATCACGGCTTTCCTCACAACTCCCGTCCCTTCATCTTCCAGGAGGT
AATTGATCACGGTCACGAAACCGTCTCCCGTGATGAGTACAAGGATCTGG
GTGCCGTCACCGAGTTCCGATTCTC
BO09490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8221-PA | 1482 | Amyrel-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amyrel-RA | 1549 | CG8221-RA | 2..811 | 16..825 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16652044..16652698 | 670..16 | 3275 | 100 | Minus |
| 2R | 25286936 | 2R | 16651833..16651989 | 825..669 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:42:39 has no hits.
BO09490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:19 Download gff for
BO09490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8221-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:47 Download gff for
BO09490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8221-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:15:26 Download gff for
BO09490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 2..811 | 16..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:44 Download gff for
BO09490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 2..811 | 16..825 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:44 Download gff for
BO09490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16651833..16651987 | 671..825 | 100 | <- | Minus |
| 2R | 16652044..16652698 | 16..670 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:15:26 Download gff for
BO09490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12539338..12539492 | 671..825 | 100 | <- | Minus |
| arm_2R | 12539549..12540203 | 16..670 | 100 | | Minus |
BO09490.complete Sequence
1513 bp (1513 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631515
> BO09490.complete
GAAGTTATCAGTCGACATGTTCAAGTTCGCTTTGACCCTGACGCTCTGCT
TGGCGGGCAGCCTTTCGCTGGCCCAGCACAATCCCCATTGGTGGGGCAAT
CGCAACACCATCGTCCACTTGTTCGAGTGGAAGTGGTCGGACATTGCCCA
GGAGTGTGAGAGTTTTCTCGGACCTCGAGGATTCGCCGGCGTTCAAGTGA
GCCCCGTTAATGAGAACATCTTATCGGCGGGTCGTCCGTGGTGGGAGCGA
TATCAACCCATCTCGTACAAGCTGACCACTCGGTCTGGTAATGAGGAGGA
ATTTGGTGACATGGTCCGTCGTTGCAACGATGTGGGTGTTCGTATCTATG
TGGATGTGCTGTTGAACCACATGTCCGGAGATTTTGACGGTGTGGCTGTG
GGCACTGCTGGAACAGAGGCGGAACCCAGTAAGAAATCCTTCCCAGGAGT
TCCATACACCGCACAGGACTTCCATCCCACCTGCGAGATTACCGACTGGA
ACGATCGCTTCCAGGTGCAACAGTGCGAACTGGTTGGCCTCAAGGATCTT
GACCAGAGCAGCGACTGGGTGAGGAGCAAGCTAATTGAGTTCCTGGATCA
CCTCATCGAACTGGGTGTTGCTGGCTTCCGGGTGGATGCCGCCAAGCATA
TGGCATCGGAAGATCTAGAGTACATCTACAGCAGCCTGAGCAACCTGAAC
ATCGATCACGGCTTTCCTCACAACTCCCGTCCCTTCATCTTCCAGGAGGT
AATTGATCACGGTCACGAAACCGTCTCCCGTGATGAGTACAAGGATCTGG
GTGCCGTCACCGAGTTCCGATTCTCCGAGGAGATTGGCAACGCCTTCCGT
GGCAACAACGCACTGAAATGGCTGCAGAGCTGGGGAACCGATTGGGGATT
CTTGCCCTCGGGTCAGGCCTTGACCTTTGTGGACAACCACGATAACCAGC
GAGACGCGGGTGCCGTGCTGAACTACAAGTCCCCCAGGCAGTACAAAATG
GCAACCGCCTTCCATTTGGCCTATCCCTACGGCATCAGTCGGGTGATGAG
CTCATTCGCCTTCGATGACCACGATACCCCGCCGCCGCAGGATGCGCAGG
AGAGAATAATTTCACCCGAGTTCGATGCGGATGGAGCCTGTGTGAATGGC
TGGATTTGCGAGCATCGTTGGCGTCAGATCTACGCGATGGTGGGCTTCAA
GAACGCCGTTCGGGATACGGAGATCACCGGCTGGTGGGACAATGGAGACA
ACCAGATCTCCTTCTGTCGCGGCAACAAGGGCTTCCTGGCTATCAACAAC
AACCTGTACGATTTGTCGCAGGATCTGAATACCTGTCTGCCTGCCGGAAC
CTACTGCGATGTGATTTCCGGCAGCCTGATCGACGGATCCTGCACCGGCA
AATCGGTCACTGTGAACGAGAATGGCTATGGCTATATACACATCGGATCC
GATGACTTCGACGGTGTACTGGCCCTGCATGTGGATGCCAAAGTTGCAAG
CTTTCTAGACCAT
BO09490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amyrel-RA | 1482 | CG8221-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amyrel-RA | 1549 | CG8221-RA | 2..1481 | 16..1495 | 7400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16651163..16651989 | 1495..669 | 4135 | 100 | Minus |
| 2R | 25286936 | 2R | 16652044..16652698 | 670..16 | 3275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:38:07 has no hits.
BO09490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:08 Download gff for
BO09490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 1..1482 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:36 Download gff for
BO09490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 2..1485 | 16..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:48 Download gff for
BO09490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 8..1481 | 22..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:08 Download gff for
BO09490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 2..1485 | 16..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:22 Download gff for
BO09490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 8..1481 | 22..1497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:22 Download gff for
BO09490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16651161..16651987 | 671..1497 | 99 | <- | Minus |
| 2R | 16652044..16652692 | 22..670 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:48 Download gff for
BO09490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12538666..12539492 | 671..1497 | 99 | <- | Minus |
| arm_2R | 12539549..12540197 | 22..670 | 100 | | Minus |
BO09490.pep Sequence
Translation from 16 to 1513
> BO09490.pep
MFKFALTLTLCLAGSLSLAQHNPHWWGNRNTIVHLFEWKWSDIAQECESF
LGPRGFAGVQVSPVNENILSAGRPWWERYQPISYKLTTRSGNEEEFGDMV
RRCNDVGVRIYVDVLLNHMSGDFDGVAVGTAGTEAEPSKKSFPGVPYTAQ
DFHPTCEITDWNDRFQVQQCELVGLKDLDQSSDWVRSKLIEFLDHLIELG
VAGFRVDAAKHMASEDLEYIYSSLSNLNIDHGFPHNSRPFIFQEVIDHGH
ETVSRDEYKDLGAVTEFRFSEEIGNAFRGNNALKWLQSWGTDWGFLPSGQ
ALTFVDNHDNQRDAGAVLNYKSPRQYKMATAFHLAYPYGISRVMSSFAFD
DHDTPPPQDAQERIISPEFDADGACVNGWICEHRWRQIYAMVGFKNAVRD
TEITGWWDNGDNQISFCRGNKGFLAINNNLYDLSQDLNTCLPAGTYCDVI
SGSLIDGSCTGKSVTVNENGYGYIHIGSDDFDGVLALHVDAKVASFLDH
BO09490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amyrel-PA | 493 | CG8221-PA | 1..493 | 1..493 | 2697 | 100 | Plus |
| Amy-p-PB | 494 | CG18730-PB | 8..494 | 10..493 | 1582 | 60.5 | Plus |
| Amy-p-PA | 494 | CG18730-PA | 8..494 | 10..493 | 1582 | 60.5 | Plus |
| Amy-d-PA | 494 | CG17876-PA | 18..494 | 19..493 | 1579 | 61.2 | Plus |
