Clone Sequence Records
BO09494.3prime Sequence
843 bp (820 high quality bases) assembled on 2006-01-23
> BO09494.3prime
ATGGTCTAGAAAGCTTGCCTTGGGACTGGTCGTGGACTTGCGCCGGGCAT
CCGTTATGGCACCCCACAGCTCGATGATGAAGTCATCCGTGAAGCCGAAC
GACTCTAGGTCCGAGTTGTCGATGGCCTCGGCGAAGTCCATTGAGTTGGA
CTTTTGGTCGCCCAAGTCCCAGATCTGGGACGCCAGCTCCGTGTCGTTGA
TGCCCATGAAGGACTCCAGCAGGTTATTAATGGCCTCGATACCGGCCACA
GTCGCCTCATCGAACTGCGGCTCGATCTGGGCATTGCCATTGGCCTTGAA
CCGCAGCGTCTCCTTGCCGCTGCCATAGTTCTTTCCTCCGGCCGAGCCCG
ACGCCCTTGACTGGCTGCGCGGTCCGATGCCCTGGAAGCCGCTTCGCACT
GGCTCCACCAGGCGCAGGGTGAAGGTCTCCCCGGTGGCAATGTCCTTCAG
CATGCGCGCCACCTCGTAGTGCCGCTTGCCCACCATATTCTGGCCGTTGA
GCTTCTCGATGTGATCGCCAACGCTGATGTGCTCGATGCGATCGATGATC
GAGTCCTCCTTGATCCGCTTTATGAAGGCGTAGCCGGCCCCGTTGTCGGT
GATCGTCAGTCCGAGGGCATCCTGCGACTTCACAATCTCGATCTCCTTGG
GCCGACCTTTGCGATGGGCGAATATAAAGTCGTCCAGCCCGATCTGCCCG
CCCAGCAGACGCGTCATGTCCACCTTGTGCGAGTTGAGGGTGCAGAAGAG
AATGTCCTTCTCGGATATGTCAAAGCACTCGGCAATCTTCTGGTACAGCT
CTCGAACGCTGGAGAAGTCGTGGATTAGACCGGTGGGACTGCC
BO09494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11546-PA | 1011 | l(2)02045-RA | 184..1008 | 843..19 | 4125 | 100 | Minus |
| CG11546-PB | 1011 | l(2)02045-RB | 184..1008 | 843..19 | 4125 | 100 | Minus |
| CG11546-PD | 1011 | l(2)02045-RD | 184..1008 | 843..19 | 4125 | 100 | Minus |
| CG11546-PC | 1011 | l(2)02045-RC | 184..1008 | 843..19 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 479..1303 | 843..19 | 4125 | 100 | Minus |
| kermit-RC | 1722 | CG11546-RC | 540..1364 | 843..19 | 4125 | 100 | Minus |
| kermit-RD | 1606 | CG11546-RD | 424..1248 | 843..19 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147276..8148100 | 19..843 | 4125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:43:17 has no hits.
BO09494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:26 Download gff for
BO09494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PD | 184..1011 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:57 Download gff for
BO09494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PC | 184..1011 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:04 Download gff for
BO09494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 424..1253 | 11..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:55:23 Download gff for
BO09494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 424..1253 | 11..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:55:23 Download gff for
BO09494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147271..8148100 | 11..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:04 Download gff for
BO09494.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034776..4035605 | 11..843 | 99 | | Plus |
BO09494.5prime Sequence
876 bp (864 high quality bases) assembled on 2006-01-23
> BO09494.5prime
GAAGTTATCAGTCGACATGCCGCTCTTCACTAGAAAATCACCCAAGCAAG
GACCCACCTCGGATGGGGGCTCCCAGTTCGGCAGTCGCTCCTCCATGAAC
TCCGGGTCCTCCCAGGGCAGCCACATTAGCAATAACAACAACAACAGCAT
TCCGGAGAAAACAAAGCCCCCGCTGGTCTTCCACTGCCAACTGGCCCACG
GCAGTCCCACCGGTCTAATCCACGACTTCTCCAGCGTTCGAGAGCTGTAC
CAGAAGATTGCCGAGTGCTTTGACATATCCGAGAAGGACATTCTCTTCTG
CACCCTCAACTCGCACAAGGTGGACATGACGCGTCTGCTGGGCGGGCAGA
TCGGGCTGGACGACTTTATATTCGCCCATCGCAAAGGTCGGCCCAAGGAG
ATCGAGATTGTGAAGTCGCAGGATGCCCTCGGACTGACGATCACCGACAA
CGGGGCCGGCTACGCCTTCATAAAGCGGATCAAGGAGGACTCGATCATCG
ATCGCATCGAGCACATCAGCGTTGGCGATCACATCGAGAAGCTCAACGGC
CAGAATATGGTGGGCAAGCGGCACTACGAGGTGGCGCGCATGCTGAAGGA
CATTGCCACCGGGGAGACCTTCACCCTGCGCCTGGTGGAGCCAGTGCGAA
GCGGCTTCCAGGGCATCGGACCGCGCAGCCAGTCAAGGGCGTCGGGCTCG
GCCGGAGGAAAGAACTATGGCAGCGGCAAGGAGACGCTGCGGTTCAAGGC
CAATGGCAATGCCCAGATCGAGCCGCAGTTCGATGAGGCGACTGTGGCCG
GTATCGAGGCCATTAATAACCTGCTGGAGTCCTCATGGGCATCAACGACA
CGGAGCTGGCGTCCCAGATCTGGGAC
BO09494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11546-PA | 1011 | l(2)02045-RA | 1..817 | 17..833 | 4060 | 99.8 | Plus |
| CG11546-PB | 1011 | l(2)02045-RB | 1..817 | 17..833 | 4060 | 99.8 | Plus |
| CG11546-PD | 1011 | l(2)02045-RD | 1..817 | 17..833 | 4060 | 99.8 | Plus |
| CG11546-PC | 1011 | l(2)02045-RC | 1..817 | 17..833 | 4060 | 99.8 | Plus |
| CG11546-PA | 1011 | l(2)02045-RA | 818..861 | 833..876 | 220 | 100 | Plus |
| CG11546-PB | 1011 | l(2)02045-RB | 818..861 | 833..876 | 220 | 100 | Plus |
| CG11546-PD | 1011 | l(2)02045-RD | 818..861 | 833..876 | 220 | 100 | Plus |
| CG11546-PC | 1011 | l(2)02045-RC | 818..861 | 833..876 | 220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 295..1156 | 16..876 | 4270 | 99.8 | Plus |
| kermit-RC | 1722 | CG11546-RC | 356..1217 | 16..876 | 4270 | 99.8 | Plus |
| kermit-RD | 1606 | CG11546-RD | 240..1101 | 16..876 | 4270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147423..8148284 | 876..16 | 4245 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:13:31 has no hits.
BO09494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:27 Download gff for
BO09494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PC | 1..861 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:16:58 Download gff for
BO09494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PD | 1..861 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:43 Download gff for
BO09494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1101 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:06:48 Download gff for
BO09494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1101 | 9..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:06:48 Download gff for
BO09494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147423..8148292 | 9..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:43 Download gff for
BO09494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034928..4035797 | 9..876 | 99 | | Minus |
BO09494.complete Sequence
1042 bp assembled on 2011-06-28
GenBank Submission: KX796514
> BO09494.complete
GAAGTTATCAGTCGACATGCCGCTCTTCACTAGAAAATCACCCAAGCAAG
GACCCACCTCGGATGGGGGCTCCCAGTTCGGCAGTCGCTCCTCCATGAAC
TCCGGGTCCTCCCAGGGCAGCCACATTAGCAATAACAACAACAACAGCAT
TCCGGAGAAAACAAAGCCCCCGCTGGTCTTCCACTGCCAACTGGCCCACG
GCAGTCCCACCGGTCTAATCCACGACTTCTCCAGCGTTCGAGAGCTGTAC
CAGAAGATTGCCGAGTGCTTTGACATATCCGAGAAGGACATTCTCTTCTG
CACCCTCAACTCGCACAAGGTGGACATGACGCGTCTGCTGGGCGGGCAGA
TCGGGCTGGACGACTTTATATTCGCCCATCGCAAAGGTCGGCCCAAGGAG
ATCGAGATTGTGAAGTCGCAGGATGCCCTCGGACTGACGATCACCGACAA
CGGGGCCGGCTACGCCTTCATAAAGCGGATCAAGGAGGACTCGATCATCG
ATCGCATCGAGCACATCAGCGTTGGCGATCACATCGAGAAGCTCAACGGC
CAGAATATGGTGGGCAAGCGGCACTACGAGGTGGCGCGCATGCTGAAGGA
CATTGCCACCGGGGAGACCTTCACCCTGCGCCTGGTGGAGCCAGTGCGAA
GCGGCTTCCAGGGCATCGGACCGCGCAGCCAGTCAAGGGCGTCGGGCTCG
GCCGGAGGAAAGAACTATGGCAGCGGCAAGGAGACGCTGCGGTTCAAGGC
CAATGGCAATGCCCAGATCGAGCCGCAGTTCGATGAGGCGACTGTGGCCG
GTATCGAGGCCATTAATAACCTGCTGGAGTCCTTCATGGGCATCAACGAC
ACGGAGCTGGCGTCCCAGATCTGGGACTTGGGCGACCAAAAGTCCAACTC
AATGGACTTCGCCGAGGCCATCGACAACTCGGACCTAGAGTCGTTCGGCT
TCACGGATGACTTCATCATCGAGCTGTGGGGTGCCATAACGGATGCCCGG
CGCAAGTCCACGACCAGTCCCAAGGCAAGCTTTCTAGACCAT
BO09494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1011 | CG11546-PE | 1..1008 | 17..1024 | 5025 | 99.9 | Plus |
| kermit-RC | 1011 | CG11546-PC | 1..1008 | 17..1024 | 5025 | 99.9 | Plus |
| kermit-RD | 1011 | CG11546-PD | 1..1008 | 17..1024 | 5025 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 295..1303 | 16..1024 | 5030 | 99.9 | Plus |
| kermit-RC | 1722 | CG11546-RC | 356..1364 | 16..1024 | 5030 | 99.9 | Plus |
| kermit-RD | 1606 | CG11546-RD | 240..1248 | 16..1024 | 5030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147276..8148284 | 1024..16 | 5030 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:04:13 has no hits.
BO09494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:01 Download gff for
BO09494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 225..1232 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:40 Download gff for
BO09494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 241..1248 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:30 Download gff for
BO09494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 241..1248 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:30 Download gff for
BO09494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147274..8148283 | 17..1026 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:40 Download gff for
BO09494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034779..4035788 | 17..1026 | 99 | | Minus |
BO09494.pep Sequence
Translation from 16 to 1042
> BO09494.pep
MPLFTRKSPKQGPTSDGGSQFGSRSSMNSGSSQGSHISNNNNNSIPEKTK
PPLVFHCQLAHGSPTGLIHDFSSVRELYQKIAECFDISEKDILFCTLNSH
KVDMTRLLGGQIGLDDFIFAHRKGRPKEIEIVKSQDALGLTITDNGAGYA
FIKRIKEDSIIDRIEHISVGDHIEKLNGQNMVGKRHYEVARMLKDIATGE
TFTLRLVEPVRSGFQGIGPRSQSRASGSAGGKNYGSGKETLRFKANGNAQ
IEPQFDEATVAGIEAINNLLESFMGINDTELASQIWDLGDQKSNSMDFAE
AIDNSDLESFGFTDDFIIELWGAITDARRKSTTSPKASFLDH
BO09494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-PE | 336 | CG11546-PE | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PC | 336 | CG11546-PC | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PD | 336 | CG11546-PD | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PB | 336 | CG11546-PB | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PA | 336 | CG11546-PA | 1..336 | 1..336 | 1739 | 100 | Plus |
