Clone BO09496 Report

Search the DGRC for BO09496

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:94
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptTango9-RA
Protein status:BO09496.pep: validated full length
Sequenced Size:1177

Clone Sequence Records

BO09496.3prime Sequence

914 bp (816 high quality bases) assembled on 2006-01-23

> BO09496.3prime
ATGGTCTAGAAAGCTTGCGATCACATCCGCTGGCCGGCTGTTCGGAGCAG
CCGCATTCTCAGTACCCAAATCCACGTAACGAGCACGATACCAGCGGGCC
ACTGCAGCTCGATACCAGTCGAGGAATAGGGCCTGTCGGTAGAGGATGAT
ACCCATTTGCAGGATGAGGAAGCCCATGATCGTGACCAGATTCATGTACT
CCCACTCCATGATAATCACAAACACCCAGATGAAGTAAACGCGTAGGCCA
TCGGCCAGAAGCCGGTTGGCGCTGGACGAGTACATCGCAATGTACAGTCC
AATGAAGTTGTACATGGCACATGAGATGGTGAAGGCAATCAGAGTCATAA
TCAATGAGATACTCCCCTGCAGAGCCGCAAAGAGATCACCCCAATCGTCG
AAAACTGCACGCGAACTACAGCTAAATGGATCAATGCTCGGCAGGAAGTT
CATGCAAATGGCCAGCATCGAGGTGATGCCCAAGCCGAAGATTCCCTGCC
AGCCAGCAGCTTGCAGTGGAGCAACATTCGAGGTTTTTAGCTGTTTCTCC
TCGCAAACATATTGCAGTCCGTGCAGAATTTCAGCAATGATGATGAGTAA
GTCGCCGGTCAGAATGGATTTGTAGTCCGTGTAAGGCAACGTGACCAGGT
CGTATTCAACGCGATGGACGTCCAGACTGATAATGTCCAGCAGGCCGCAC
GATATCGTAAAGATGGCCAGCCAGTGCCGTCCGGTCAGCGTGTGATTCAG
AAACATGGTGCTAAAGATGCCCACAAAGATCAGGGCGGCGCCTCTTATCA
TCTGAAAGCTGGTGGCGTAAGTCAAGTAAAGTCCGGTGAACAACAGAATG
GAGGCTGCCGCATCCAGCAAAGTGGGGCATAGCATGCTAACAGGGCGGAA
CTCACTGCTGTTCT

BO09496.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10007-PA 1146 CG10007-RA 251..1143 911..19 4415 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RB 3673 CG10007-RB 548..1440 911..19 4435 99.8 Minus
Tango9-RA 1590 CG10007-RA 548..1440 911..19 4435 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11973240..11974014 19..793 3875 100 Plus
3R 32079331 3R 11974073..11974193 791..911 575 98.3 Plus
Blast to na_te.dros performed 2015-02-12 11:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1256..1294 355..317 114 76.9 Minus

BO09496.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:30 Download gff for BO09496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10007-PA 248..1146 15..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:02 Download gff for BO09496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10007-PA 248..1146 15..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:26:37 Download gff for BO09496.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 545..1450 8..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:36 Download gff for BO09496.3prime
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 545..1450 8..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:36 Download gff for BO09496.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11973230..11974012 8..791 99 <- Plus
3R 11974074..11974196 792..914 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:26:37 Download gff for BO09496.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7798952..7799734 8..791 99 <- Plus
arm_3R 7799796..7799918 792..914 97   Plus

BO09496.5prime Sequence

924 bp (783 high quality bases) assembled on 2006-01-23

> BO09496.5prime
GAAGTTATCAGTCGACATGGATCATCGTGTTTTCCTGTCGCTGATCTTTG
TGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAA
CAGGTAATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGT
GTTCACACTGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCA
AGGTGATCCGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGAT
AGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATT
GCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTT
ACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATC
TTTGTGGGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACG
GCACTGGCTGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCA
GTCTGGACGTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACG
GACTACAAATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAAT
TCTGCACGGACTGCAATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGA
ATGTTGCTCCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGC
ATCACCTCGATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCC
ATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTG
CGGCTCTGCAGGGGAGTATCTCATTGATTATGACTCTGATTGCCTTCACC
ATCTCATGTGCCATGTACAACTTCATTGGACTGTACATTGCGATGTACTC
GTCCAGCGCCAACCGGCTTCTGGC

BO09496.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10007-PA 1146 CG10007-RA 1..908 17..924 4540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RB 3673 CG10007-RB 298..1205 17..924 4540 100 Plus
Tango9-RA 1590 CG10007-RA 298..1205 17..924 4540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11973475..11974014 924..385 2700 100 Minus
3R 32079331 3R 11974073..11974227 387..233 775 100 Minus
3R 32079331 3R 11974308..11974457 234..85 750 100 Minus
3R 32079331 3R 11974543..11974613 87..17 355 100 Minus
Blast to na_te.dros performed 2015-02-10 23:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1256..1294 823..861 114 76.9 Plus

BO09496.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:31 Download gff for BO09496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10007-PA 1..908 17..924 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:03 Download gff for BO09496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10007-PA 1..908 17..924 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:32:52 Download gff for BO09496.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 295..1205 13..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:17 Download gff for BO09496.5prime
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 295..1205 13..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:17 Download gff for BO09496.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11973475..11974012 387..924 100 <- Minus
3R 11974074..11974227 233..386 100 <- Minus
3R 11974310..11974457 85..232 100 <- Minus
3R 11974546..11974616 13..84 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:32:52 Download gff for BO09496.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7799197..7799734 387..924 100 <- Minus
arm_3R 7799796..7799949 233..386 100 <- Minus
arm_3R 7800032..7800179 85..232 100 <- Minus
arm_3R 7800268..7800338 13..84 98   Minus

BO09496.complete Sequence

1177 bp (1177 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631516

> BO09496.complete
GAAGTTATCAGTCGACATGGATCATCGTGTTTTCCTGTCGCTGATCTTTG
TGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAA
CAGGTAATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGT
GTTCACACTGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCA
AGGTGATCCGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGAT
AGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATT
GCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTT
ACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATC
TTTGTGGGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACG
GCACTGGCTGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCA
GTCTGGACGTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACG
GACTACAAATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAAT
TCTGCACGGACTGCAATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGA
ATGTTGCTCCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGC
ATCACCTCGATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCC
ATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTG
CGGCTCTGCAGGGGAGTATCTCATTGATTATGACTCTGATTGCCTTCACC
ATCTCATGTGCCATGTACAACTTCATTGGACTGTACATTGCGATGTACTC
GTCCAGCGCCAACCGGCTTCTGGCCGATGGCCTACGCGTTTACTTCATCT
GGGTGTTTGTGATTATCATGGAGTGGGAGTACATGAATCTGGTCACGATC
ATGGGCTTCCTCATCCTGCAAATGGGTATCATCCTCTACCGACAGGCCCT
ATTCCTCGACTGGTATCGAGCTGCAGTGGCCCGCTGGTATCGTGCTCGTT
ACGTGGATTTGGGTACTGAGAATGCGGCTGCTCCGAACAGCCGGCCAGCG
GATGTGATCGCAAGCTTTCTAGACCAT

BO09496.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RB 1146 CG10007-PB 1..1143 17..1159 5715 100 Plus
Tango9-RA 1146 CG10007-PA 1..1143 17..1159 5715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-RB 3673 CG10007-RB 298..1440 17..1159 5715 100 Plus
Tango9-RA 1590 CG10007-RA 298..1440 17..1159 5715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11973240..11974014 1159..385 3875 100 Minus
3R 32079331 3R 11974073..11974227 387..233 775 100 Minus
3R 32079331 3R 11974308..11974457 234..85 750 100 Minus
3R 32079331 3R 11974543..11974613 87..17 355 100 Minus
Blast to na_te.dros performed 2014-11-27 07:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1256..1294 823..861 114 76.9 Plus

BO09496.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:09 Download gff for BO09496.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 1..1146 17..1163 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:38 Download gff for BO09496.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 250..1405 13..1170 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:01 Download gff for BO09496.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 298..1440 17..1161 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:09 Download gff for BO09496.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 250..1405 13..1170 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:25 Download gff for BO09496.complete
Subject Subject Range Query Range Percent Splice Strand
Tango9-RA 298..1440 17..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:25 Download gff for BO09496.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11973238..11974012 387..1161 99 <- Minus
3R 11974074..11974227 233..386 100 <- Minus
3R 11974310..11974457 85..232 100 <- Minus
3R 11974546..11974613 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:01 Download gff for BO09496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7798960..7799734 387..1161 99 <- Minus
arm_3R 7799796..7799949 233..386 100 <- Minus
arm_3R 7800032..7800179 85..232 100 <- Minus
arm_3R 7800268..7800335 17..84 100   Minus

BO09496.pep Sequence

Translation from 16 to 1177

> BO09496.pep
MDHRVFLSLIFVLSGTFNVLVVKWANQQQVIGSDGKLHGFQHPVVFTLLM
FLGEFLCFAVFKVIRLISNRRGVISDLDSILSQDSSEFRPVSMLLPTLLD
AAASILLFTGLYLTYATSFQMIRGAALIFVGIFSTMFLNHTLTGRHWLAI
FTISCGLLDIISLDVHRVEYDLVTLPYTDYKSILTGDLLIIIAEILHGLQ
YVCEEKQLKTSNVAPLQAAGWQGIFGLGITSMLAICMNFLPSIDPFSCSS
RAVFDDWGDLFAALQGSISLIMTLIAFTISCAMYNFIGLYIAMYSSSANR
LLADGLRVYFIWVFVIIMEWEYMNLVTIMGFLILQMGIILYRQALFLDWY
RAAVARWYRARYVDLGTENAAAPNSRPADVIASFLDH

BO09496.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tango9-PB 381 CG10007-PB 1..381 1..381 1950 100 Plus
Tango9-PA 381 CG10007-PA 1..381 1..381 1950 100 Plus