Clone Sequence Records
BO09496.3prime Sequence
914 bp (816 high quality bases) assembled on 2006-01-23
> BO09496.3prime
ATGGTCTAGAAAGCTTGCGATCACATCCGCTGGCCGGCTGTTCGGAGCAG
CCGCATTCTCAGTACCCAAATCCACGTAACGAGCACGATACCAGCGGGCC
ACTGCAGCTCGATACCAGTCGAGGAATAGGGCCTGTCGGTAGAGGATGAT
ACCCATTTGCAGGATGAGGAAGCCCATGATCGTGACCAGATTCATGTACT
CCCACTCCATGATAATCACAAACACCCAGATGAAGTAAACGCGTAGGCCA
TCGGCCAGAAGCCGGTTGGCGCTGGACGAGTACATCGCAATGTACAGTCC
AATGAAGTTGTACATGGCACATGAGATGGTGAAGGCAATCAGAGTCATAA
TCAATGAGATACTCCCCTGCAGAGCCGCAAAGAGATCACCCCAATCGTCG
AAAACTGCACGCGAACTACAGCTAAATGGATCAATGCTCGGCAGGAAGTT
CATGCAAATGGCCAGCATCGAGGTGATGCCCAAGCCGAAGATTCCCTGCC
AGCCAGCAGCTTGCAGTGGAGCAACATTCGAGGTTTTTAGCTGTTTCTCC
TCGCAAACATATTGCAGTCCGTGCAGAATTTCAGCAATGATGATGAGTAA
GTCGCCGGTCAGAATGGATTTGTAGTCCGTGTAAGGCAACGTGACCAGGT
CGTATTCAACGCGATGGACGTCCAGACTGATAATGTCCAGCAGGCCGCAC
GATATCGTAAAGATGGCCAGCCAGTGCCGTCCGGTCAGCGTGTGATTCAG
AAACATGGTGCTAAAGATGCCCACAAAGATCAGGGCGGCGCCTCTTATCA
TCTGAAAGCTGGTGGCGTAAGTCAAGTAAAGTCCGGTGAACAACAGAATG
GAGGCTGCCGCATCCAGCAAAGTGGGGCATAGCATGCTAACAGGGCGGAA
CTCACTGCTGTTCT
BO09496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10007-PA | 1146 | CG10007-RA | 251..1143 | 911..19 | 4415 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-RB | 3673 | CG10007-RB | 548..1440 | 911..19 | 4435 | 99.8 | Minus |
Tango9-RA | 1590 | CG10007-RA | 548..1440 | 911..19 | 4435 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11973240..11974014 | 19..793 | 3875 | 100 | Plus |
3R | 32079331 | 3R | 11974073..11974193 | 791..911 | 575 | 98.3 | Plus |
Blast to na_te.dros performed 2015-02-12 11:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1256..1294 | 355..317 | 114 | 76.9 | Minus |
BO09496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:30 Download gff for
BO09496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10007-PA | 248..1146 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:02 Download gff for
BO09496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10007-PA | 248..1146 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:26:37 Download gff for
BO09496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 545..1450 | 8..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:36 Download gff for
BO09496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 545..1450 | 8..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:36 Download gff for
BO09496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11973230..11974012 | 8..791 | 99 | <- | Plus |
3R | 11974074..11974196 | 792..914 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:26:37 Download gff for
BO09496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7798952..7799734 | 8..791 | 99 | <- | Plus |
arm_3R | 7799796..7799918 | 792..914 | 97 | | Plus |
BO09496.5prime Sequence
924 bp (783 high quality bases) assembled on 2006-01-23
> BO09496.5prime
GAAGTTATCAGTCGACATGGATCATCGTGTTTTCCTGTCGCTGATCTTTG
TGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAA
CAGGTAATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGT
GTTCACACTGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCA
AGGTGATCCGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGAT
AGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATT
GCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTT
ACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATC
TTTGTGGGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACG
GCACTGGCTGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCA
GTCTGGACGTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACG
GACTACAAATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAAT
TCTGCACGGACTGCAATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGA
ATGTTGCTCCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGC
ATCACCTCGATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCC
ATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTG
CGGCTCTGCAGGGGAGTATCTCATTGATTATGACTCTGATTGCCTTCACC
ATCTCATGTGCCATGTACAACTTCATTGGACTGTACATTGCGATGTACTC
GTCCAGCGCCAACCGGCTTCTGGC
BO09496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10007-PA | 1146 | CG10007-RA | 1..908 | 17..924 | 4540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-RB | 3673 | CG10007-RB | 298..1205 | 17..924 | 4540 | 100 | Plus |
Tango9-RA | 1590 | CG10007-RA | 298..1205 | 17..924 | 4540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11973475..11974014 | 924..385 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 11974073..11974227 | 387..233 | 775 | 100 | Minus |
3R | 32079331 | 3R | 11974308..11974457 | 234..85 | 750 | 100 | Minus |
3R | 32079331 | 3R | 11974543..11974613 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 23:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1256..1294 | 823..861 | 114 | 76.9 | Plus |
BO09496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:31 Download gff for
BO09496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10007-PA | 1..908 | 17..924 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:03 Download gff for
BO09496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10007-PA | 1..908 | 17..924 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:32:52 Download gff for
BO09496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 295..1205 | 13..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:17 Download gff for
BO09496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 295..1205 | 13..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:17 Download gff for
BO09496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11973475..11974012 | 387..924 | 100 | <- | Minus |
3R | 11974074..11974227 | 233..386 | 100 | <- | Minus |
3R | 11974310..11974457 | 85..232 | 100 | <- | Minus |
3R | 11974546..11974616 | 13..84 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:32:52 Download gff for
BO09496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7799197..7799734 | 387..924 | 100 | <- | Minus |
arm_3R | 7799796..7799949 | 233..386 | 100 | <- | Minus |
arm_3R | 7800032..7800179 | 85..232 | 100 | <- | Minus |
arm_3R | 7800268..7800338 | 13..84 | 98 | | Minus |
BO09496.complete Sequence
1177 bp (1177 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631516
> BO09496.complete
GAAGTTATCAGTCGACATGGATCATCGTGTTTTCCTGTCGCTGATCTTTG
TGCTCAGCGGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAA
CAGGTAATCGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGT
GTTCACACTGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCA
AGGTGATCCGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGAT
AGCATCTTGTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATT
GCCCACTTTGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTT
ACTTGACTTACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATC
TTTGTGGGCATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACG
GCACTGGCTGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCA
GTCTGGACGTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACG
GACTACAAATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAAT
TCTGCACGGACTGCAATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGA
ATGTTGCTCCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGC
ATCACCTCGATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCC
ATTTAGCTGTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTG
CGGCTCTGCAGGGGAGTATCTCATTGATTATGACTCTGATTGCCTTCACC
ATCTCATGTGCCATGTACAACTTCATTGGACTGTACATTGCGATGTACTC
GTCCAGCGCCAACCGGCTTCTGGCCGATGGCCTACGCGTTTACTTCATCT
GGGTGTTTGTGATTATCATGGAGTGGGAGTACATGAATCTGGTCACGATC
ATGGGCTTCCTCATCCTGCAAATGGGTATCATCCTCTACCGACAGGCCCT
ATTCCTCGACTGGTATCGAGCTGCAGTGGCCCGCTGGTATCGTGCTCGTT
ACGTGGATTTGGGTACTGAGAATGCGGCTGCTCCGAACAGCCGGCCAGCG
GATGTGATCGCAAGCTTTCTAGACCAT
BO09496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-RB | 1146 | CG10007-PB | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Tango9-RA | 1146 | CG10007-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-RB | 3673 | CG10007-RB | 298..1440 | 17..1159 | 5715 | 100 | Plus |
Tango9-RA | 1590 | CG10007-RA | 298..1440 | 17..1159 | 5715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11973240..11974014 | 1159..385 | 3875 | 100 | Minus |
3R | 32079331 | 3R | 11974073..11974227 | 387..233 | 775 | 100 | Minus |
3R | 32079331 | 3R | 11974308..11974457 | 234..85 | 750 | 100 | Minus |
3R | 32079331 | 3R | 11974543..11974613 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1256..1294 | 823..861 | 114 | 76.9 | Plus |
BO09496.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:09 Download gff for
BO09496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 1..1146 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:38 Download gff for
BO09496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 250..1405 | 13..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:01 Download gff for
BO09496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 298..1440 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:09 Download gff for
BO09496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 250..1405 | 13..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:25 Download gff for
BO09496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango9-RA | 298..1440 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:25 Download gff for
BO09496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11973238..11974012 | 387..1161 | 99 | <- | Minus |
3R | 11974074..11974227 | 233..386 | 100 | <- | Minus |
3R | 11974310..11974457 | 85..232 | 100 | <- | Minus |
3R | 11974546..11974613 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:01 Download gff for
BO09496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7798960..7799734 | 387..1161 | 99 | <- | Minus |
arm_3R | 7799796..7799949 | 233..386 | 100 | <- | Minus |
arm_3R | 7800032..7800179 | 85..232 | 100 | <- | Minus |
arm_3R | 7800268..7800335 | 17..84 | 100 | | Minus |
BO09496.pep Sequence
Translation from 16 to 1177
> BO09496.pep
MDHRVFLSLIFVLSGTFNVLVVKWANQQQVIGSDGKLHGFQHPVVFTLLM
FLGEFLCFAVFKVIRLISNRRGVISDLDSILSQDSSEFRPVSMLLPTLLD
AAASILLFTGLYLTYATSFQMIRGAALIFVGIFSTMFLNHTLTGRHWLAI
FTISCGLLDIISLDVHRVEYDLVTLPYTDYKSILTGDLLIIIAEILHGLQ
YVCEEKQLKTSNVAPLQAAGWQGIFGLGITSMLAICMNFLPSIDPFSCSS
RAVFDDWGDLFAALQGSISLIMTLIAFTISCAMYNFIGLYIAMYSSSANR
LLADGLRVYFIWVFVIIMEWEYMNLVTIMGFLILQMGIILYRQALFLDWY
RAAVARWYRARYVDLGTENAAAPNSRPADVIASFLDH
BO09496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango9-PB | 381 | CG10007-PB | 1..381 | 1..381 | 1950 | 100 | Plus |
Tango9-PA | 381 | CG10007-PA | 1..381 | 1..381 | 1950 | 100 | Plus |