Clone BO09503 Report

Search the DGRC for BO09503

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG9418-RA
Protein status:BO09503.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO09503.3prime Sequence

888 bp (861 high quality bases) assembled on 2006-01-23

> BO09503.3prime
ATGGTCTAGAAAGCTTGCCGGTTTTAGCAAGCTACTGGTGTCCACTTTAC
GCAGCGCCTCTCGTGCCTTAATCAAAGTGACGTTGCTTGGCTGAGTGACG
AGCCCGGCTAAGTGCCGGATGTACTTGTCAATGTTGCCAACGCTGGGACC
ACTTGGCTCCAGTGGTGGCATCGAGATTCCGCCGAGAGCTGCGACCAGTT
TCTGGCGCAAGGCGCGCAAATAGGTCTCCAGGCGTTGGTTCTCCTCCATG
AGCTCAGTTACCTCGCCCATCACCTTGGCGTACCCGGCTTTCGTATTATC
TACGTGCTGTTCCAGCACAGCGTTCTGCTGCTCCAGATCGGTCTTGGCCT
TGCGCAGCGTCCTCAGCTCATTCTCCGTGCTGCGATTGTGTTCGATGAAC
TCGTTGGTGTAGATGGGTATCTCGCCGGGCTGCAGCGGTCGTGGTGCAGG
TGTCGCAGGTGGCACGCTGCTGGGAGGGGGCTGTACTGGAGCCGCTGGCG
GTGTGGGAGGCGGTGGTGTCTGGGCACGCTTCACCTTGGCCAGAGGCACA
TCATCCGGATCCTCGCTCTGCCGCTTAACCGGCTTTGCCTTGGTCTTCTT
CGCCTTGCCCAAGGCTGATTCACCCTTCGGCGTCTTTTCCTTGGGCGAAC
CATCCAGTTTTGTGGCTTTCTTGGCTTTGGCCAACTCGTTGGCCACAATT
TCGGGGTGTTCCTTGAGAAACATTTGCAACTGCTCCTGATATATGGCCTT
GTCCTTGGCGGCTGCCTCGATGTAGGGCAACTTGCGCTCCTCGGGCAGCT
GATGCCACTCCTCGCCGATGATCCTTGTGTGCTCCAGGGCAGTACGTTGT
GGCTGCTCCCGTCGCAGTTCCTCGCGTCGATCGTTCAT

BO09503.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9418-PA 1131 CG9418-RA 259..1128 888..19 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-RA 1347 CG9418-RA 357..1226 888..19 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21146764..21147487 742..19 3620 100 Minus
2R 25286936 2R 21146559..21146704 888..743 730 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:48:16 has no hits.

BO09503.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:34 Download gff for BO09503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-PA 259..1131 16..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:08 Download gff for BO09503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-PA 259..1131 16..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:10 Download gff for BO09503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 357..1226 19..888 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:22 Download gff for BO09503.3prime
Subject Subject Range Query Range Percent Splice Strand
Hmg-2-RA 357..1226 19..888 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:22 Download gff for BO09503.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21146559..21146704 743..888 100 -> Minus
2R 21146764..21147487 19..742 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:10 Download gff for BO09503.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17034064..17034209 743..888 100 -> Minus
arm_2R 17034269..17034992 19..742 100   Minus

BO09503.5prime Sequence

883 bp (860 high quality bases) assembled on 2006-01-23

> BO09503.5prime
GAAGTTATCAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGG
TTCCGGAATCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACG
GCGACCATTGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAA
AGCCAAGAATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAAC
TGAAGAAGCTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATG
CCACTTAATGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCG
ACGGGAGCAGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCG
AGGAGTGGCATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCA
GCCGCCAAGGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAA
GGAACACCCCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCA
CAAAACTGGATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCC
TTGGGCAAGGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGA
GGATCCGGATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCAC
CGCCTCCCACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTG
CCACCTGCGACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCAT
CTACACCAACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGA
GGACGCTGCGCAAGGCCAAGACCGATCTGGAGCAGCAGAACGCTGTGCTG
GAACAGCACGTAGATAATACGAAAGCCGGGTAC

BO09503.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9418-PA 1131 CG9418-RA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-RA 1347 CG9418-RA 99..965 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21146764..21147226 421..883 2315 100 Plus
2R 25286936 2R 21146301..21146704 17..420 2020 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:07:22 has no hits.

BO09503.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:35 Download gff for BO09503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:10 Download gff for BO09503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:30 Download gff for BO09503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 94..965 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:45 Download gff for BO09503.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmg-2-RA 94..965 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:45 Download gff for BO09503.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21146764..21147226 421..883 100   Plus
2R 21146296..21146704 9..420 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:30 Download gff for BO09503.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17033801..17034209 9..420 99 -> Plus
arm_2R 17034269..17034731 421..883 100   Plus

BO09503.complete Sequence

1162 bp (1162 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631517

> BO09503.complete
GAAGTTATCAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGG
TTCCGGAATCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACG
GCGACCATTGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAA
AGCCAAGAATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAAC
TGAAGAAGCTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATG
CCACTTAATGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCG
ACGGGAGCAGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCG
AGGAGTGGCATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCA
GCCGCCAAGGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAA
GGAACACCCCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCA
CAAAACTGGATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCC
TTGGGCAAGGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGA
GGATCCGGATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCAC
CGCCTCCCACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTG
CCACCTGCGACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCAT
CTACACCAACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGA
GGACGCTGCGCAAGGCCAAGACCGATCTGGAGCAGCAGAACGCTGTGCTG
GAACAGCACGTAGATAATACGAAAGCCGGGTACGCCAAGGTGATGGGCGA
GGTAACTGAGCTCATGGAGGAGAACCAACGCCTGGAGACCTATTTGCGCG
CCTTGCGCCAGAAACTGGTCGCAGCTCTCGGCGGAATCTCGATGCCACCA
CTGGAGCCAAGTGGTCCCAGCGTTGGCAACATTGACAAGTACATCCGGCA
CTTAGCCGGGCTCGTCACTCAGCCAAGCAACGTCACTTTGATTAAGGCAC
GAGAGGCGCTGCGTAAAGTGGACACCAGTAGCTTGCTAAAACCGGCAAGC
TTTCTAGACCAT

BO09503.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-RA 1131 CG9418-PA 1..1128 17..1144 5640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-RA 1347 CG9418-RA 99..1226 17..1144 5640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21146764..21147487 421..1144 3620 100 Plus
2R 25286936 2R 21146301..21146704 17..420 2020 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:23:15 has no hits.

BO09503.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:10 Download gff for BO09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 1..1131 17..1147 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:40 Download gff for BO09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 89..1221 9..1144 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:38 Download gff for BO09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 99..1226 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:10 Download gff for BO09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG9418-RA 89..1221 9..1144 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:27 Download gff for BO09503.complete
Subject Subject Range Query Range Percent Splice Strand
Hmg-2-RA 99..1226 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:27 Download gff for BO09503.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21146301..21146704 17..420 100 -> Plus
2R 21146764..21147487 421..1146 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:38 Download gff for BO09503.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17033806..17034209 17..420 100 -> Plus
arm_2R 17034269..17034992 421..1146 99   Plus

BO09503.pep Sequence

Translation from 16 to 1162

> BO09503.pep
MTEPTSKTPDAVPESPVSLPIASQSMDTATIEDFDEDKPAKGKKKAKNPK
GRHSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQ
RTALEHTRIIGEEWHQLPEERKLPYIEAAAKDKAIYQEQLQMFLKEHPEI
VANELAKAKKATKLDGSPKEKTPKGESALGKAKKTKAKPVKRQSEDPDDV
PLAKVKRAQTPPPPTPPAAPVQPPPSSVPPATPAPRPLQPGEIPIYTNEF
IEHNRSTENELRTLRKAKTDLEQQNAVLEQHVDNTKAGYAKVMGEVTELM
EENQRLETYLRALRQKLVAALGGISMPPLEPSGPSVGNIDKYIRHLAGLV
TQPSNVTLIKAREALRKVDTSSLLKPASFLDH

BO09503.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Hmg-2-PA 376 CG9418-PA 1..376 1..376 1931 100 Plus
Ssrp-PA 723 CG4817-PA 482..703 3..214 161 25.3 Plus