Clone Sequence Records
BO09503.3prime Sequence
888 bp (861 high quality bases) assembled on 2006-01-23
> BO09503.3prime
ATGGTCTAGAAAGCTTGCCGGTTTTAGCAAGCTACTGGTGTCCACTTTAC
GCAGCGCCTCTCGTGCCTTAATCAAAGTGACGTTGCTTGGCTGAGTGACG
AGCCCGGCTAAGTGCCGGATGTACTTGTCAATGTTGCCAACGCTGGGACC
ACTTGGCTCCAGTGGTGGCATCGAGATTCCGCCGAGAGCTGCGACCAGTT
TCTGGCGCAAGGCGCGCAAATAGGTCTCCAGGCGTTGGTTCTCCTCCATG
AGCTCAGTTACCTCGCCCATCACCTTGGCGTACCCGGCTTTCGTATTATC
TACGTGCTGTTCCAGCACAGCGTTCTGCTGCTCCAGATCGGTCTTGGCCT
TGCGCAGCGTCCTCAGCTCATTCTCCGTGCTGCGATTGTGTTCGATGAAC
TCGTTGGTGTAGATGGGTATCTCGCCGGGCTGCAGCGGTCGTGGTGCAGG
TGTCGCAGGTGGCACGCTGCTGGGAGGGGGCTGTACTGGAGCCGCTGGCG
GTGTGGGAGGCGGTGGTGTCTGGGCACGCTTCACCTTGGCCAGAGGCACA
TCATCCGGATCCTCGCTCTGCCGCTTAACCGGCTTTGCCTTGGTCTTCTT
CGCCTTGCCCAAGGCTGATTCACCCTTCGGCGTCTTTTCCTTGGGCGAAC
CATCCAGTTTTGTGGCTTTCTTGGCTTTGGCCAACTCGTTGGCCACAATT
TCGGGGTGTTCCTTGAGAAACATTTGCAACTGCTCCTGATATATGGCCTT
GTCCTTGGCGGCTGCCTCGATGTAGGGCAACTTGCGCTCCTCGGGCAGCT
GATGCCACTCCTCGCCGATGATCCTTGTGTGCTCCAGGGCAGTACGTTGT
GGCTGCTCCCGTCGCAGTTCCTCGCGTCGATCGTTCAT
BO09503.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9418-PA | 1131 | CG9418-RA | 259..1128 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-RA | 1347 | CG9418-RA | 357..1226 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21146764..21147487 | 742..19 | 3620 | 100 | Minus |
2R | 25286936 | 2R | 21146559..21146704 | 888..743 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:48:16 has no hits.
BO09503.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:34 Download gff for
BO09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-PA | 259..1131 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:08 Download gff for
BO09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-PA | 259..1131 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:10 Download gff for
BO09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 357..1226 | 19..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:22 Download gff for
BO09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmg-2-RA | 357..1226 | 19..888 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:22 Download gff for
BO09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21146559..21146704 | 743..888 | 100 | -> | Minus |
2R | 21146764..21147487 | 19..742 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:10 Download gff for
BO09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17034064..17034209 | 743..888 | 100 | -> | Minus |
arm_2R | 17034269..17034992 | 19..742 | 100 | | Minus |
BO09503.5prime Sequence
883 bp (860 high quality bases) assembled on 2006-01-23
> BO09503.5prime
GAAGTTATCAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGG
TTCCGGAATCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACG
GCGACCATTGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAA
AGCCAAGAATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAAC
TGAAGAAGCTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATG
CCACTTAATGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCG
ACGGGAGCAGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCG
AGGAGTGGCATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCA
GCCGCCAAGGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAA
GGAACACCCCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCA
CAAAACTGGATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCC
TTGGGCAAGGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGA
GGATCCGGATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCAC
CGCCTCCCACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTG
CCACCTGCGACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCAT
CTACACCAACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGA
GGACGCTGCGCAAGGCCAAGACCGATCTGGAGCAGCAGAACGCTGTGCTG
GAACAGCACGTAGATAATACGAAAGCCGGGTAC
BO09503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9418-PA | 1131 | CG9418-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-RA | 1347 | CG9418-RA | 99..965 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21146764..21147226 | 421..883 | 2315 | 100 | Plus |
2R | 25286936 | 2R | 21146301..21146704 | 17..420 | 2020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:07:22 has no hits.
BO09503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:35 Download gff for
BO09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:10 Download gff for
BO09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:30 Download gff for
BO09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 94..965 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:49:45 Download gff for
BO09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmg-2-RA | 94..965 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:49:45 Download gff for
BO09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21146764..21147226 | 421..883 | 100 | | Plus |
2R | 21146296..21146704 | 9..420 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:30 Download gff for
BO09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17033801..17034209 | 9..420 | 99 | -> | Plus |
arm_2R | 17034269..17034731 | 421..883 | 100 | | Plus |
BO09503.complete Sequence
1162 bp (1162 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631517
> BO09503.complete
GAAGTTATCAGTCGACATGACGGAACCAACGAGCAAGACACCGGATGCGG
TTCCGGAATCACCCGTATCACTGCCCATCGCCTCCCAATCCATGGATACG
GCGACCATTGAAGATTTCGACGAGGACAAACCGGCCAAGGGAAAGAAGAA
AGCCAAGAATCCAAAGGGTCGCCACTCGGATTCCGACATCGGCTCCGAAC
TGAAGAAGCTGGCCCAGCGCCGGATCAACGTAGCCGGTGCTCCAAAAATG
CCACTTAATGGCTACGTCCGCTTCATGAACGATCGACGCGAGGAACTGCG
ACGGGAGCAGCCACAACGTACTGCCCTGGAGCACACAAGGATCATCGGCG
AGGAGTGGCATCAGCTGCCCGAGGAGCGCAAGTTGCCCTACATCGAGGCA
GCCGCCAAGGACAAGGCCATATATCAGGAGCAGTTGCAAATGTTTCTCAA
GGAACACCCCGAAATTGTGGCCAACGAGTTGGCCAAAGCCAAGAAAGCCA
CAAAACTGGATGGTTCGCCCAAGGAAAAGACGCCGAAGGGTGAATCAGCC
TTGGGCAAGGCGAAGAAGACCAAGGCAAAGCCGGTTAAGCGGCAGAGCGA
GGATCCGGATGATGTGCCTCTGGCCAAGGTGAAGCGTGCCCAGACACCAC
CGCCTCCCACACCGCCAGCGGCTCCAGTACAGCCCCCTCCCAGCAGCGTG
CCACCTGCGACACCTGCACCACGACCGCTGCAGCCCGGCGAGATACCCAT
CTACACCAACGAGTTCATCGAACACAATCGCAGCACGGAGAATGAGCTGA
GGACGCTGCGCAAGGCCAAGACCGATCTGGAGCAGCAGAACGCTGTGCTG
GAACAGCACGTAGATAATACGAAAGCCGGGTACGCCAAGGTGATGGGCGA
GGTAACTGAGCTCATGGAGGAGAACCAACGCCTGGAGACCTATTTGCGCG
CCTTGCGCCAGAAACTGGTCGCAGCTCTCGGCGGAATCTCGATGCCACCA
CTGGAGCCAAGTGGTCCCAGCGTTGGCAACATTGACAAGTACATCCGGCA
CTTAGCCGGGCTCGTCACTCAGCCAAGCAACGTCACTTTGATTAAGGCAC
GAGAGGCGCTGCGTAAAGTGGACACCAGTAGCTTGCTAAAACCGGCAAGC
TTTCTAGACCAT
BO09503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-RA | 1131 | CG9418-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-RA | 1347 | CG9418-RA | 99..1226 | 17..1144 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21146764..21147487 | 421..1144 | 3620 | 100 | Plus |
2R | 25286936 | 2R | 21146301..21146704 | 17..420 | 2020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:23:15 has no hits.
BO09503.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:10 Download gff for
BO09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 1..1131 | 17..1147 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:40 Download gff for
BO09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 89..1221 | 9..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:38 Download gff for
BO09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 99..1226 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:10 Download gff for
BO09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9418-RA | 89..1221 | 9..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:27 Download gff for
BO09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hmg-2-RA | 99..1226 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:27 Download gff for
BO09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21146301..21146704 | 17..420 | 100 | -> | Plus |
2R | 21146764..21147487 | 421..1146 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:38 Download gff for
BO09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17033806..17034209 | 17..420 | 100 | -> | Plus |
arm_2R | 17034269..17034992 | 421..1146 | 99 | | Plus |
BO09503.pep Sequence
Translation from 16 to 1162
> BO09503.pep
MTEPTSKTPDAVPESPVSLPIASQSMDTATIEDFDEDKPAKGKKKAKNPK
GRHSDSDIGSELKKLAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQ
RTALEHTRIIGEEWHQLPEERKLPYIEAAAKDKAIYQEQLQMFLKEHPEI
VANELAKAKKATKLDGSPKEKTPKGESALGKAKKTKAKPVKRQSEDPDDV
PLAKVKRAQTPPPPTPPAAPVQPPPSSVPPATPAPRPLQPGEIPIYTNEF
IEHNRSTENELRTLRKAKTDLEQQNAVLEQHVDNTKAGYAKVMGEVTELM
EENQRLETYLRALRQKLVAALGGISMPPLEPSGPSVGNIDKYIRHLAGLV
TQPSNVTLIKAREALRKVDTSSLLKPASFLDH
BO09503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hmg-2-PA | 376 | CG9418-PA | 1..376 | 1..376 | 1931 | 100 | Plus |
Ssrp-PA | 723 | CG4817-PA | 482..703 | 3..214 | 161 | 25.3 | Plus |