Clone Sequence Records
BO09506.3prime Sequence
866 bp (825 high quality bases) assembled on 2006-01-23
> BO09506.3prime
ATGGTCTAGAAAGCTTGCGTCCAAACCGTCATCGACGAAGTCGGCGGAGT
CCTTTTTAGGCTTAGGCTCGCTCGGCTTTCCAGCCTTTTCACCCGCTTGG
CCAAAGGCAGCACCCACATCTCCACCGGGCACAATCTTCTTGATAAGGTT
GTATATCTTCGGGTTCGACGCGTACTTTGTGATGTTACCCGGATTTGACA
AAATGTCCTGAATGGCGGCTGACACCTCGGGATCTGACATGGCGCCCAGT
ATATCAGACATATTTCCGTTACCAGGATTCCCACCGGAAAATTCTCCAGA
TGATCCACCAGAGCTGGCATTGTGCTTTTCCTGCTCCTTACGTGCGCGCC
TCTGATCCCGCTGGCGTTCCTTGATCTTACGCTCTGCCTGGCGACGCTCC
TGCTTCAAGCGATGCTGCTCGATTTTCTTGGCATTCGGAGTGACCTCCTT
TAGCCACTCGTCTGTCTCCTCGTCAAAGTCCAGCTTGCATGCTTGGCGCA
AATCATGGGCAGCCAGCTCAAAATCTCCGAGGAGGCGACGGGCGCGTCCC
CTGAACTTGTAGCCAGCCGCCAAATCCGAGTTGAGTTCCAGCGCCACGTC
GCAGTCCCGAATGCAGGCATTCGGCTTCTTCAGCTTGAGGAAGGCCTGAC
CACGCTTAGCGTGGAAAAGGGCATTACCCGGGCTCAGTTCAATGGCCTTG
GTGTACAAGGCGATGGCCTCGTCGAACTTCTGCTGGCCGTAAGCGGAGGC
CGCCTGGGCGCGCAGCTCGCTCGCCTGCTCCACCTCCTCTTCGGTGGCCT
TCTTGCTGTAGTTGCCCATGGGTTGGGCGGGGTCGCTGTCCGCCTCGATC
ACACCCTCCATGTCCA
BO09506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2947-PA | 1134 | CG2947-RA | 284..1131 | 866..19 | 4240 | 100 | Minus |
CG2947-PB | 1134 | CG2947-RB | 284..1131 | 866..19 | 4240 | 100 | Minus |
CG32789-PA | 1134 | CG32789-RA | 284..1131 | 866..19 | 4215 | 99.8 | Minus |
CG2947-PC | 846 | CG2947-RC | 1..843 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HIP-R-RD | 2006 | CG2947-RD | 347..1194 | 866..19 | 4240 | 100 | Minus |
HIP-R-RB | 2065 | CG2947-RB | 406..1253 | 866..19 | 4240 | 100 | Minus |
HIP-R-RA | 2085 | CG2947-RA | 426..1273 | 866..19 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3790755..3791403 | 855..207 | 3245 | 100 | Minus |
X | 23542271 | X | 3799838..3800486 | 855..207 | 3245 | 100 | Minus |
X | 23542271 | X | 3791475..3791665 | 209..19 | 955 | 100 | Minus |
X | 23542271 | X | 3800558..3800748 | 209..19 | 940 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:47:07 has no hits.
BO09506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:38 Download gff for
BO09506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2947-PB | 285..1134 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:14 Download gff for
BO09506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2947-PB | 285..1134 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:45 Download gff for
BO09506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HIP-R-RA | 427..1284 | 5..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:15 Download gff for
BO09506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HIP-R-RA | 427..1284 | 5..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:15 Download gff for
BO09506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3790755..3791402 | 208..855 | 100 | -> | Minus |
X | 3791477..3791669 | 14..207 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:45 Download gff for
BO09506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3684788..3685435 | 208..855 | 100 | -> | Minus |
arm_X | 3685510..3685702 | 14..207 | 98 | -> | Minus |
BO09506.5prime Sequence
857 bp (831 high quality bases) assembled on 2006-01-23
> BO09506.5prime
GAAGTTATCAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGA
AGCTGAAGTACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAAC
ATGCCGCAGCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCAC
GGTGCCGCCTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCAT
TCGGCGGTGTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAG
GATAGCGAGGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCT
GGACATGGAGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGG
GCAACTACAGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAG
CTGCGCGCCCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGC
CATCGCCTTGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTT
TCCACGCTAAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCC
TGCATTCGGGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGC
TGGCTACAAGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGC
TGGCTGCCCATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAG
ACAGACGAGTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCA
GCATCGCTTGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAAC
GCCAGCGGGATCAGAGGCGCGCACGTAGGGAGCAGGAAAAGCACAATGCC
AGCTCTG
BO09506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32789-PA | 1134 | CG32789-RA | 1..841 | 17..857 | 4180 | 99.8 | Plus |
CG2947-PA | 1134 | CG2947-RA | 1..841 | 17..857 | 4180 | 99.8 | Plus |
CG2947-PB | 1134 | CG2947-RB | 1..841 | 17..857 | 4180 | 99.8 | Plus |
CG2947-PC | 846 | CG2947-RC | 1..553 | 305..857 | 2740 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HIP-R-RD | 2006 | CG2947-RD | 64..904 | 17..857 | 4190 | 99.9 | Plus |
HIP-R-RB | 2065 | CG2947-RB | 123..963 | 17..857 | 4190 | 99.9 | Plus |
HIP-R-RA | 2085 | CG2947-RA | 143..983 | 17..857 | 4190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3790755..3791301 | 311..857 | 2720 | 99.8 | Plus |
X | 23542271 | X | 3799838..3800384 | 311..857 | 2720 | 99.8 | Plus |
X | 23542271 | X | 3790164..3790336 | 17..189 | 865 | 100 | Plus |
X | 23542271 | X | 3799247..3799419 | 17..189 | 865 | 100 | Plus |
X | 23542271 | X | 3790416..3790541 | 189..314 | 630 | 100 | Plus |
X | 23542271 | X | 3799499..3799624 | 189..314 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:23:26 has no hits.
BO09506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:38 Download gff for
BO09506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32789-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:15 Download gff for
BO09506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2947-PB | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:56:22 Download gff for
BO09506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HIP-R-RA | 140..983 | 14..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:38 Download gff for
BO09506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HIP-R-RA | 140..983 | 14..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:38 Download gff for
BO09506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3790161..3790336 | 14..189 | 99 | -> | Plus |
X | 3790417..3790538 | 190..311 | 100 | -> | Plus |
X | 3790756..3791301 | 312..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:56:22 Download gff for
BO09506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3684194..3684369 | 14..189 | 99 | -> | Plus |
arm_X | 3684450..3684571 | 190..311 | 100 | -> | Plus |
arm_X | 3684789..3685334 | 312..857 | 99 | | Plus |
BO09506.complete Sequence
1165 bp (1165 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631518
> BO09506.complete
GAAGTTATCAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGA
AGCTGAAGTACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAAC
ATGCCGCAGCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCAC
GGTGCCGCCTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCAT
TCGGCGGTGTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAG
GATAGCGAGGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCT
GGACATGGAGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGG
GCAACTACAGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAG
CTGCGCGCCCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGC
CATCGCCTTGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTT
TCCACGCTAAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCC
TGCATTCGGGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGC
TGGCTACAAGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGC
TGGCTGCCCATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAG
ACAGACGAGTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCA
GCATCGCTTGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAAC
GCCAGCGGGATCAGAGGCGCGCACGTAAGGAGCAGGAAAAGCACAATGCC
AGCTCTGGTGGATCATCTGGAGAATTTTCCGGTGGGAATCCTGGTAACGG
AAATATGTCTGATATACTGGGCGCCATGTCAGATCCCGAGGTGTCAGCCG
CCATTCAGGACATTTTGTCAAATCCGGGTAACATCACAAAGTACGCGTCG
AACCCGAAGATATACAACCTTATCAAGAAGATTGTGCCCGGTGGAGATGT
GGGTGCTGCCTTTGGCCAAGCGGGTGAAAAGGCTGGAAAGCCGAGCGAGC
CTAAGCCTAAAAAGGACTCCGCCGACTTCGTCGATGACGGTTTGGACGCA
AGCTTTCTAGACCAT
BO09506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HIP-R-RD | 1134 | CG2947-PD | 1..1131 | 17..1147 | 5655 | 100 | Plus |
HIP-R-RB | 1134 | CG2947-PB | 1..1131 | 17..1147 | 5655 | 100 | Plus |
HIP-R-RA | 1134 | CG2947-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HIP-R-RD | 2006 | CG2947-RD | 64..1194 | 17..1147 | 5655 | 100 | Plus |
HIP-R-RB | 2065 | CG2947-RB | 123..1253 | 17..1147 | 5655 | 100 | Plus |
HIP-R-RA | 2085 | CG2947-RA | 143..1273 | 17..1147 | 5655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3790755..3791403 | 311..959 | 3245 | 100 | Plus |
X | 23542271 | X | 3799838..3800486 | 311..959 | 3245 | 100 | Plus |
X | 23542271 | X | 3791475..3791665 | 957..1147 | 955 | 100 | Plus |
X | 23542271 | X | 3800558..3800748 | 957..1147 | 940 | 99.5 | Plus |
X | 23542271 | X | 3790164..3790336 | 17..189 | 865 | 100 | Plus |
X | 23542271 | X | 3799247..3799419 | 17..189 | 865 | 100 | Plus |
X | 23542271 | X | 3790416..3790541 | 189..314 | 630 | 100 | Plus |
X | 23542271 | X | 3799499..3799624 | 189..314 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:07:20 has no hits.
BO09506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:11 Download gff for
BO09506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2947-RB | 1..1134 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:41 Download gff for
BO09506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2947-RB | 125..1269 | 14..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:25 Download gff for
BO09506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HIP-R-RA | 143..1273 | 17..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:12 Download gff for
BO09506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2947-RB | 125..1269 | 14..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:17 Download gff for
BO09506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HIP-R-RA | 143..1273 | 17..1149 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:17 Download gff for
BO09506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3790164..3790336 | 17..189 | 100 | -> | Plus |
X | 3790417..3790538 | 190..311 | 100 | -> | Plus |
X | 3790756..3791402 | 312..958 | 100 | -> | Plus |
X | 3791477..3791665 | 959..1149 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:25 Download gff for
BO09506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3684197..3684369 | 17..189 | 100 | -> | Plus |
arm_X | 3684450..3684571 | 190..311 | 100 | -> | Plus |
arm_X | 3684789..3685435 | 312..958 | 100 | -> | Plus |
arm_X | 3685510..3685698 | 959..1149 | 98 | | Plus |
BO09506.pep Sequence
Translation from 16 to 1165
> BO09506.pep
MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQ
FNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGV
IEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYT
KAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFR
GRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPNAKKIEQHRLKQ
ERRQAERKIKERQRDQRRARKEQEKHNASSGGSSGEFSGGNPGNGNMSDI
LGAMSDPEVSAAIQDILSNPGNITKYASNPKIYNLIKKIVPGGDVGAAFG
QAGEKAGKPSEPKPKKDSADFVDDGLDASFLDH
BO09506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HIP-R-PD | 377 | CG2947-PD | 1..377 | 1..377 | 1955 | 100 | Plus |
HIP-R-PB | 377 | CG2947-PB | 1..377 | 1..377 | 1955 | 100 | Plus |
HIP-R-PA | 377 | CG2947-PA | 1..377 | 1..377 | 1955 | 100 | Plus |
HIP-PA | 377 | CG32789-PA | 1..377 | 1..377 | 1955 | 100 | Plus |