Clone BO09506 Report

Search the DGRC for BO09506

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptHIP-RA
Protein status:BO09506.pep: validated full length
Sequenced Size:1165

Clone Sequence Records

BO09506.3prime Sequence

866 bp (825 high quality bases) assembled on 2006-01-23

> BO09506.3prime
ATGGTCTAGAAAGCTTGCGTCCAAACCGTCATCGACGAAGTCGGCGGAGT
CCTTTTTAGGCTTAGGCTCGCTCGGCTTTCCAGCCTTTTCACCCGCTTGG
CCAAAGGCAGCACCCACATCTCCACCGGGCACAATCTTCTTGATAAGGTT
GTATATCTTCGGGTTCGACGCGTACTTTGTGATGTTACCCGGATTTGACA
AAATGTCCTGAATGGCGGCTGACACCTCGGGATCTGACATGGCGCCCAGT
ATATCAGACATATTTCCGTTACCAGGATTCCCACCGGAAAATTCTCCAGA
TGATCCACCAGAGCTGGCATTGTGCTTTTCCTGCTCCTTACGTGCGCGCC
TCTGATCCCGCTGGCGTTCCTTGATCTTACGCTCTGCCTGGCGACGCTCC
TGCTTCAAGCGATGCTGCTCGATTTTCTTGGCATTCGGAGTGACCTCCTT
TAGCCACTCGTCTGTCTCCTCGTCAAAGTCCAGCTTGCATGCTTGGCGCA
AATCATGGGCAGCCAGCTCAAAATCTCCGAGGAGGCGACGGGCGCGTCCC
CTGAACTTGTAGCCAGCCGCCAAATCCGAGTTGAGTTCCAGCGCCACGTC
GCAGTCCCGAATGCAGGCATTCGGCTTCTTCAGCTTGAGGAAGGCCTGAC
CACGCTTAGCGTGGAAAAGGGCATTACCCGGGCTCAGTTCAATGGCCTTG
GTGTACAAGGCGATGGCCTCGTCGAACTTCTGCTGGCCGTAAGCGGAGGC
CGCCTGGGCGCGCAGCTCGCTCGCCTGCTCCACCTCCTCTTCGGTGGCCT
TCTTGCTGTAGTTGCCCATGGGTTGGGCGGGGTCGCTGTCCGCCTCGATC
ACACCCTCCATGTCCA

BO09506.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2947-PA 1134 CG2947-RA 284..1131 866..19 4240 100 Minus
CG2947-PB 1134 CG2947-RB 284..1131 866..19 4240 100 Minus
CG32789-PA 1134 CG32789-RA 284..1131 866..19 4215 99.8 Minus
CG2947-PC 846 CG2947-RC 1..843 861..19 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-RD 2006 CG2947-RD 347..1194 866..19 4240 100 Minus
HIP-R-RB 2065 CG2947-RB 406..1253 866..19 4240 100 Minus
HIP-R-RA 2085 CG2947-RA 426..1273 866..19 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3790755..3791403 855..207 3245 100 Minus
X 23542271 X 3799838..3800486 855..207 3245 100 Minus
X 23542271 X 3791475..3791665 209..19 955 100 Minus
X 23542271 X 3800558..3800748 209..19 940 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 21:47:07 has no hits.

BO09506.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:38 Download gff for BO09506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2947-PB 285..1134 15..865 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:14 Download gff for BO09506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2947-PB 285..1134 15..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:45 Download gff for BO09506.3prime
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 427..1284 5..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:15 Download gff for BO09506.3prime
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 427..1284 5..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:15 Download gff for BO09506.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3790755..3791402 208..855 100 -> Minus
X 3791477..3791669 14..207 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:45 Download gff for BO09506.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3684788..3685435 208..855 100 -> Minus
arm_X 3685510..3685702 14..207 98 -> Minus

BO09506.5prime Sequence

857 bp (831 high quality bases) assembled on 2006-01-23

> BO09506.5prime
GAAGTTATCAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGA
AGCTGAAGTACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAAC
ATGCCGCAGCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCAC
GGTGCCGCCTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCAT
TCGGCGGTGTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAG
GATAGCGAGGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCT
GGACATGGAGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGG
GCAACTACAGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAG
CTGCGCGCCCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGC
CATCGCCTTGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTT
TCCACGCTAAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCC
TGCATTCGGGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGC
TGGCTACAAGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGC
TGGCTGCCCATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAG
ACAGACGAGTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCA
GCATCGCTTGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAAC
GCCAGCGGGATCAGAGGCGCGCACGTAGGGAGCAGGAAAAGCACAATGCC
AGCTCTG

BO09506.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32789-PA 1134 CG32789-RA 1..841 17..857 4180 99.8 Plus
CG2947-PA 1134 CG2947-RA 1..841 17..857 4180 99.8 Plus
CG2947-PB 1134 CG2947-RB 1..841 17..857 4180 99.8 Plus
CG2947-PC 846 CG2947-RC 1..553 305..857 2740 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-RD 2006 CG2947-RD 64..904 17..857 4190 99.9 Plus
HIP-R-RB 2065 CG2947-RB 123..963 17..857 4190 99.9 Plus
HIP-R-RA 2085 CG2947-RA 143..983 17..857 4190 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3790755..3791301 311..857 2720 99.8 Plus
X 23542271 X 3799838..3800384 311..857 2720 99.8 Plus
X 23542271 X 3790164..3790336 17..189 865 100 Plus
X 23542271 X 3799247..3799419 17..189 865 100 Plus
X 23542271 X 3790416..3790541 189..314 630 100 Plus
X 23542271 X 3799499..3799624 189..314 630 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:23:26 has no hits.

BO09506.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:38 Download gff for BO09506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32789-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:15 Download gff for BO09506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2947-PB 1..841 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:56:22 Download gff for BO09506.5prime
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 140..983 14..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:38 Download gff for BO09506.5prime
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 140..983 14..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:38 Download gff for BO09506.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3790161..3790336 14..189 99 -> Plus
X 3790417..3790538 190..311 100 -> Plus
X 3790756..3791301 312..857 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:56:22 Download gff for BO09506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3684194..3684369 14..189 99 -> Plus
arm_X 3684450..3684571 190..311 100 -> Plus
arm_X 3684789..3685334 312..857 99   Plus

BO09506.complete Sequence

1165 bp (1165 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631518

> BO09506.complete
GAAGTTATCAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGA
AGCTGAAGTACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAAC
ATGCCGCAGCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCAC
GGTGCCGCCTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCAT
TCGGCGGTGTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAG
GATAGCGAGGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCT
GGACATGGAGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGG
GCAACTACAGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAG
CTGCGCGCCCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGC
CATCGCCTTGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTT
TCCACGCTAAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCC
TGCATTCGGGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGC
TGGCTACAAGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGC
TGGCTGCCCATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAG
ACAGACGAGTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCA
GCATCGCTTGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAAC
GCCAGCGGGATCAGAGGCGCGCACGTAAGGAGCAGGAAAAGCACAATGCC
AGCTCTGGTGGATCATCTGGAGAATTTTCCGGTGGGAATCCTGGTAACGG
AAATATGTCTGATATACTGGGCGCCATGTCAGATCCCGAGGTGTCAGCCG
CCATTCAGGACATTTTGTCAAATCCGGGTAACATCACAAAGTACGCGTCG
AACCCGAAGATATACAACCTTATCAAGAAGATTGTGCCCGGTGGAGATGT
GGGTGCTGCCTTTGGCCAAGCGGGTGAAAAGGCTGGAAAGCCGAGCGAGC
CTAAGCCTAAAAAGGACTCCGCCGACTTCGTCGATGACGGTTTGGACGCA
AGCTTTCTAGACCAT

BO09506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-RD 1134 CG2947-PD 1..1131 17..1147 5655 100 Plus
HIP-R-RB 1134 CG2947-PB 1..1131 17..1147 5655 100 Plus
HIP-R-RA 1134 CG2947-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-RD 2006 CG2947-RD 64..1194 17..1147 5655 100 Plus
HIP-R-RB 2065 CG2947-RB 123..1253 17..1147 5655 100 Plus
HIP-R-RA 2085 CG2947-RA 143..1273 17..1147 5655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3790755..3791403 311..959 3245 100 Plus
X 23542271 X 3799838..3800486 311..959 3245 100 Plus
X 23542271 X 3791475..3791665 957..1147 955 100 Plus
X 23542271 X 3800558..3800748 957..1147 940 99.5 Plus
X 23542271 X 3790164..3790336 17..189 865 100 Plus
X 23542271 X 3799247..3799419 17..189 865 100 Plus
X 23542271 X 3790416..3790541 189..314 630 100 Plus
X 23542271 X 3799499..3799624 189..314 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:07:20 has no hits.

BO09506.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:11 Download gff for BO09506.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 1..1134 17..1151 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:41 Download gff for BO09506.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 125..1269 14..1161 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:25 Download gff for BO09506.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 143..1273 17..1149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:12 Download gff for BO09506.complete
Subject Subject Range Query Range Percent Splice Strand
CG2947-RB 125..1269 14..1161 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:17 Download gff for BO09506.complete
Subject Subject Range Query Range Percent Splice Strand
HIP-R-RA 143..1273 17..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:17 Download gff for BO09506.complete
Subject Subject Range Query Range Percent Splice Strand
X 3790164..3790336 17..189 100 -> Plus
X 3790417..3790538 190..311 100 -> Plus
X 3790756..3791402 312..958 100 -> Plus
X 3791477..3791665 959..1149 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:25 Download gff for BO09506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3684197..3684369 17..189 100 -> Plus
arm_X 3684450..3684571 190..311 100 -> Plus
arm_X 3684789..3685435 312..958 100 -> Plus
arm_X 3685510..3685698 959..1149 98   Plus

BO09506.pep Sequence

Translation from 16 to 1165

> BO09506.pep
MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQ
FNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGV
IEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYT
KAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFR
GRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPNAKKIEQHRLKQ
ERRQAERKIKERQRDQRRARKEQEKHNASSGGSSGEFSGGNPGNGNMSDI
LGAMSDPEVSAAIQDILSNPGNITKYASNPKIYNLIKKIVPGGDVGAAFG
QAGEKAGKPSEPKPKKDSADFVDDGLDASFLDH

BO09506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
HIP-R-PD 377 CG2947-PD 1..377 1..377 1955 100 Plus
HIP-R-PB 377 CG2947-PB 1..377 1..377 1955 100 Plus
HIP-R-PA 377 CG2947-PA 1..377 1..377 1955 100 Plus
HIP-PA 377 CG32789-PA 1..377 1..377 1955 100 Plus