Clone Sequence Records
BO09509.3prime Sequence
910 bp (840 high quality bases) assembled on 2006-01-23
> BO09509.3prime
ATGGTCTAGAAAGCTTGCGAGTTGCGATTTGGTTCCAGAACGGGACACGC
TTATTCCGTAAAACTGGGCCAGTCGTCTGGCCTCCCGCCATCCCGCCTCG
ACTGCTCCGTGAACCGTGGAGTAGTAGTGCTCGCTGGACGCTTCTCCGGC
GAACTGGACAATGGGTCTATCGCAGCGACTCTGCTGCCACGCCTCGTCCT
CCGAGTCCTTGTCCTTCTCCGGAGTGGTGGCCACCACGGTCAGGGGATGG
GATAACTCCCGTGCACCCGTTCCCAGCTGCTCCGTGTCCATGGATCGATA
GGAGTAGGACCCACGAAAATTGTCATTCGTATACCAGGCAGAGGTGCGGA
AATTCGCGGGATCTGGGATTTTCCACCTCAGGAATCTTCGGAAGAGGTAC
ATAACGCCAGCCTGGACCTCATCAACGGGAAGGGTTTCCATGTGCCTGCC
GCTCTCATTGGTTATCCAGCCCGCCAAGATTCTCGGCTGATAGCTCACCC
TGTAGAAGCCAAAGACATCCTCCAACCATGCTCGAGAAGTGCCGCGTATG
TCATCCAAATCCTCGTCCCGCCAGAGCATGGTGAAACCCGTCCAATCCTC
GGGCCAAAATGCCTCGGGAAACTCCACAAAGATTTTGTTGACCGTTCCAA
AGGCCAAACCGTCAATGGCACGTTGTTTCTCTACTGGAAGCTGTGGCTCA
AATAGCCGAAGGTGCTGATCCTTGAGAACTCCCAATGAAACCGTGACCAC
CACATGGTCAGCTATACAGGTCTCTCCATTGCTCATTTGAAGTTCCACGC
GTCCGTCGTTCCGATTCCAGTTGATCTTCACAACACGAGTGCCAAGCAGG
AGACGCTGCTCCAGAACTCCATGCTCCACATTTAACTCCCTGGAGCGCAT
GAGAAGCCGT
BO09509.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7737-PA | 1530 | CG7737-RA | 636..1527 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7737-RB | 2416 | CG7737-RB | 892..1783 | 910..19 | 4460 | 100 | Minus |
| CG7737-RA | 2317 | CG7737-RA | 793..1684 | 910..19 | 4460 | 100 | Minus |
| CG7460-RC | 1814 | CG7460-RC | 1435..1513 | 158..80 | 200 | 83.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11225222..11226113 | 910..19 | 4460 | 100 | Minus |
| 3L | 28110227 | 3L | 17742161..17742239 | 158..80 | 200 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:14:52 has no hits.
BO09509.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:43 Download gff for
BO09509.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-PA | 636..1530 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:23 Download gff for
BO09509.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-PA | 636..1530 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:40 Download gff for
BO09509.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 793..1689 | 12..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:29 Download gff for
BO09509.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 793..1689 | 12..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:29 Download gff for
BO09509.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11225222..11226118 | 12..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:40 Download gff for
BO09509.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7112727..7113623 | 12..910 | 99 | | Minus |
BO09509.5prime Sequence
857 bp (754 high quality bases) assembled on 2006-01-23
> BO09509.5prime
GAAGTTATCAGTCGACATGAGTGGCGCACAGCGGAATCAGGATCGCAAGA
TCGTTGTCATCGGAGCAGGAGCCTCGGGTGTGGCCTGTGCCACCAAACTG
CTGGAATTGGGCTTTCAGAATGTGCTCGTCGTGGAGGCGGAGGATCGTCT
AGGTGGCCGCATACACACTATACCCTTTGCGGACAACGTCATTGATCTGG
GTGCCCAATGGTGTCATGGGGAACGGGACAACATTGTGTACGAACTGACA
CGGAAACAGGATGAGGAGCTGCTGGAGTCGACGGGTCCGGTCTACGAAAA
CTATGAGTGCGTCCGCTCCAACGGAGATGTGGTACCGGAAGAGGTATCTA
GTCGCCTGAAAGCCATCGTCGGGGATTCACTGGTCACCCGGCAACTGGAG
CTGCGTCACTGCAGCGGTTCCTTGGGCAGCTATCTGACCAACAAGTTTTA
CGACACTCTCCGGCGTCCGGAAAACTCCGATATAGACGCAGAGGTGGCCA
GTGAGTTCTTTGTCAACTATCAGAAATTCGAGAACTCCGTCGAGGCCTCG
GATACGCTAGAACAAGTTTCGGGACGAGGTTACCTGGACTATTGGGAGTG
CGAGGGCGATATCCTGCTAAACTGGAAGGACAAGGGCTATGTGGAGCTTC
TACGGCTTCTCATGCGCTCCAGGGAGTTAAATGTGGAGCATGGAGTTCTG
GAGCAGCGTCTCCTGCTTGGCACTCGTGTTGTGAAGATCAACTGGAATCG
GAACGACGGACGCGTGGAACTTCAAATGAGCAATGGAGAGACCTGTATAG
CTGACCATGTGGTGGTCACGGTTTCATTGGGAGTTCTCAAGGATCAGCAC
CTTCGGC
BO09509.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7737-PA | 1530 | CG7737-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7737-RB | 2416 | CG7737-RB | 257..1097 | 17..857 | 4205 | 100 | Plus |
| CG7737-RA | 2317 | CG7737-RA | 158..998 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11224587..11225427 | 17..857 | 4205 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 2827..2868 | 374..415 | 111 | 73.8 | Plus |
BO09509.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:44 Download gff for
BO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:24 Download gff for
BO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:22:14 Download gff for
BO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 156..998 | 14..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:28 Download gff for
BO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 156..998 | 14..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:28 Download gff for
BO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11224585..11225427 | 14..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:22:14 Download gff for
BO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7112090..7112932 | 14..857 | 99 | | Plus |
BO09509.complete Sequence
1561 bp (1561 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631519
> BO09509.complete
GAAGTTATCAGTCGACATGAGTGGCGCACAGCGGAATCAGGATCGCAAGA
TCGTTGTCATCGGAGCAGGAGCCTCGGGTGTGGCCTGTGCCACCAAACTG
CTGGAATTGGGCTTTCAGAATGTGCTCGTCGTGGAGGCGGAGGATCGTCT
AGGTGGCCGCATACACACTATACCCTTTGCGGACAACGTCATTGATCTGG
GTGCCCAATGGTGTCATGGGGAACGGGACAACATTGTGTACGAACTGACA
CGGAAACAGGATGAGGAGCTGCTGGAGTCGACGGGTCCGGTCTACGAAAA
CTATGAGTGCGTCCGCTCCAACGGAGATGTGGTACCGGAAGAGGTATCTA
GTCGCCTGAAAGCCATCGTCGGGGATTCACTGGTCACCCGGCAACTGGAG
CTGCGTCACTGCAGCGGTTCCTTGGGCAGCTATCTGACCAACAAGTTTTA
CGACACTCTCCGGCGTCCGGAAAACTCCGATATAGACGCAGAGGTGGCCA
GTGAGTTCTTTGTCAACTATCAGAAATTCGAGAACTCCGTCGAGGCCTCG
GATACGCTAGAACAAGTTTCGGGACGAGGTTACCTGGACTATTGGGAGTG
CGAGGGCGATATCCTGCTAAACTGGAAGGACAAGGGCTATGTGGAGCTTC
TACGGCTTCTCATGCGCTCCAGGGAGTTAAATGTGGAGCATGGAGTTCTG
GAGCAGCGTCTCCTGCTTGGCACTCGTGTTGTGAAGATCAACTGGAATCG
GAACGACGGACGCGTGGAACTTCAAATGAGCAATGGAGAGACCTGTATAG
CTGACCATGTGGTGGTCACGGTTTCATTGGGAGTTCTCAAGGATCAGCAC
CTTCGGCTATTTGAGCCACAGCTTCCAGTAGAGAAACAACGTGCCATTGA
CGGTTTGGCCTTTGGAACGGTCAACAAAATCTTTGTGGAGTTTCCCGAGG
CATTTTGGCCCGAGGATTGGACGGGTTTCACCATGCTCTGGCGGGACGAG
GATTTGGATGACATACGCGGCACTTCTCGAGCATGGTTGGAGGATGTCTT
TGGCTTCTACAGGGTGAGCTATCAGCCGAGAATCTTGGCGGGCTGGATAA
CCAATGAGAGCGGCAGGCACATGGAAACCCTTCCCGTTGATGAGGTCCAG
GCTGGCGTTATGTACCTCTTCCGAAGATTCCTGAGGTGGAAAATCCCAGA
TCCCGCGAATTTCCGCACCTCTGCCTGGTATACGAATGACAATTTTCGTG
GGTCCTACTCCTATCGATCCATGGACACGGAGCAGCTGGGAACGGGTGCA
CGGGAGTTATCCCATCCCCTGACCGTGGTGGCCACCACTCCGGAGAAGGA
CAAGGACTCGGAGGACGAGGCGTGGCAGCAGAGTCGCTGCGATAGACCCA
TTGTCCAGTTCGCCGGAGAAGCGTCCAGCGAGCACTACTACTCCACGGTT
CACGGAGCAGTCGAGGCGGGATGGCGGGAGGCCAGACGACTGGCCCAGTT
TTACGGAATAAGCGTGTCCCGTTCTGGAACCAAATCGCAACTCGCAAGCT
TTCTAGACCAT
BO09509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7737-RB | 1632 | CG7737-PB | 103..1629 | 17..1543 | 7635 | 100 | Plus |
| CG7737-RA | 1530 | CG7737-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
| CG7460-RC | 1461 | CG7460-PC | 1337..1415 | 1404..1482 | 200 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7737-RB | 2416 | CG7737-RB | 257..1783 | 17..1543 | 7635 | 100 | Plus |
| CG7737-RA | 2317 | CG7737-RA | 158..1684 | 17..1543 | 7635 | 100 | Plus |
| CG7460-RC | 1814 | CG7460-RC | 1435..1513 | 1404..1482 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11224587..11226113 | 17..1543 | 7635 | 100 | Plus |
| 3L | 28110227 | 3L | 17742161..17742239 | 1404..1482 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:46:53 has no hits.
BO09509.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:13 Download gff for
BO09509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 1..1530 | 17..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:43 Download gff for
BO09509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 156..1689 | 14..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:58 Download gff for
BO09509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 158..1684 | 17..1545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:13 Download gff for
BO09509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 156..1689 | 14..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:07 Download gff for
BO09509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7737-RA | 158..1684 | 17..1545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:07 Download gff for
BO09509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11224587..11226113 | 17..1545 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:58 Download gff for
BO09509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7112092..7113618 | 17..1545 | 99 | | Plus |
BO09509.pep Sequence
Translation from 16 to 1561
> BO09509.pep
MSGAQRNQDRKIVVIGAGASGVACATKLLELGFQNVLVVEAEDRLGGRIH
TIPFADNVIDLGAQWCHGERDNIVYELTRKQDEELLESTGPVYENYECVR
SNGDVVPEEVSSRLKAIVGDSLVTRQLELRHCSGSLGSYLTNKFYDTLRR
PENSDIDAEVASEFFVNYQKFENSVEASDTLEQVSGRGYLDYWECEGDIL
LNWKDKGYVELLRLLMRSRELNVEHGVLEQRLLLGTRVVKINWNRNDGRV
ELQMSNGETCIADHVVVTVSLGVLKDQHLRLFEPQLPVEKQRAIDGLAFG
TVNKIFVEFPEAFWPEDWTGFTMLWRDEDLDDIRGTSRAWLEDVFGFYRV
SYQPRILAGWITNESGRHMETLPVDEVQAGVMYLFRRFLRWKIPDPANFR
TSAWYTNDNFRGSYSYRSMDTEQLGTGARELSHPLTVVATTPEKDKDSED
EAWQQSRCDRPIVQFAGEASSEHYYSTVHGAVEAGWREARRLAQFYGISV
SRSGTKSQLASFLDH
BO09509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7737-PB | 543 | CG7737-PB | 35..543 | 1..509 | 2684 | 100 | Plus |
| CG7737-PA | 509 | CG7737-PA | 1..509 | 1..509 | 2684 | 100 | Plus |
| CG7460-PC | 486 | CG7460-PC | 10..485 | 4..502 | 1262 | 49.8 | Plus |
| CG7460-PB | 486 | CG7460-PB | 10..485 | 4..502 | 1262 | 49.8 | Plus |
| CG5653-PA | 476 | CG5653-PA | 9..469 | 11..496 | 984 | 43.3 | Plus |
