Clone Sequence Records
BO09515.3prime Sequence
870 bp (826 high quality bases) assembled on 2006-01-23
> BO09515.3prime
ATGGTCTAGAAAGCTTGCCAGGTAGATTCGTCGCAGGTCCTTCGGCGTGG
TAATCGAGTTGCACTGCGGGCACAGCTTTCGCGCGCCGAGCGTCTGCAAC
CAACACTGCTCGCAGTGGACGTGCCAGCAGGACACGGAGATGGCGGGATT
CTTGTAGTCGTCGATGCAGATCAGGCACTTGTACTTGCCCTGCGCCTGCT
TTTCGTAGAGCCGCAGCTTGGCCTTCAGCGATTCGATGATCTGCTGCTGG
TTTTGGGAGGTGGATCGCGTGGACCGCGACGTAGACGGCTCCTCGCTGGC
TGGTGGAGCCTCCACGTTGCTTGTGCTGGCAGGCTCTTGCTCGGTGGCTT
CGCTGGAATGGTTTGGCTTGGGCCCATCGCTGGAGGAGATAAGTCGGCGC
ACGTAGCTGGTAACATCCGCCTCGGAAACATTTCCCTCTGTGTCCTCGTT
GACCAGTGGGATCACATCGCCCTCGCCATACTGCGTAGGACCATAGATGT
GAGTGTCATCCTCGTCCACGTTGAGATCTTCGTCCTCGTCGTCCTGCGCC
TGCTGACTGCCATTGTATTTGATTCTCTGGCCCAGGCCCAGGGCGGAATA
GCCTCCTTGCACGAGAGTGGAGACGCGAATGCGCTTCTGTCCCGCCCACT
CGTACTCTTCATATTCCTCGCTGTCCTCCGAGTCCTCACTCGAATGCCGC
TCACCATTGGCCTGACCATTGCGGCGGCTCTGGCGCANGCAATGATTAAC
ATGCTCTTGGATGTTGGACTGCGGAAAGTTGTGGTTGCACACGGGACAGG
TGGGTTGGCTCGATTCGGCAGCAGCTACGGAACGAGTTGCTGCAGCTGGA
GGAGGAGCAGCTGCTACCGT
BO09515.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-PA | 1197 | CG4813-RA | 343..1194 | 870..19 | 4191 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-RA | 1531 | CG4813-RA | 488..1339 | 870..19 | 4219 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22725076..22725927 | 19..870 | 4219 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:40:17 has no hits.
BO09515.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:49 Download gff for
BO09515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-PA | 343..1197 | 18..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:31 Download gff for
BO09515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-PA | 343..1197 | 18..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:08:24 Download gff for
BO09515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 456..1307 | 19..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:30:50 Download gff for
BO09515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 488..1339 | 19..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:30:50 Download gff for
BO09515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22725076..22725927 | 19..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:08:24 Download gff for
BO09515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18550798..18551649 | 19..870 | 99 | | Plus |
BO09515.5prime Sequence
903 bp (858 high quality bases) assembled on 2006-01-23
> BO09515.5prime
GAAGTTATCAGTCGACATGGCTACGGACACGGTGTCCAACGGCGAGAACT
TCGCCCAGCACTTGAGCAGAAACAGCGACGACGACGTGATCTGTCCCACA
TGCGACGTGAAGATCAAGCGCAGTCAGGTGGCCGATCACTGCCAAGTGGA
GATGGAGCGATTGCACAATCCCATTAGCGCTGTCACTCCACCGACCCCAA
CTAGCGGAGCAACCGCGTCCGAGGAATCCGGTTCGGTATCGGGGGGCAGA
CAACCGTGGAGCGTGTTCCAGCGGGTGCAGCGCAATCGGCAGGCCCGTCA
GCGCCAGCGCACCAGGAAGCGTCCGGCTTCTCCTGCCCCACCAGCAACTG
TAAATCCTACGGTAGCAGCTGCTCCTCCTCCAGCTGCAGCAACTCCGTCC
GTAGCTGCTGCCGAATCGAGCCAACCCACCTGTCCCGTGTGCAACCACAA
CTTTCCGCAGTCCAACATCCAAGAGCATGTTAATCATTGCCTGCGCCAGA
GCCGCCGCAATGGTCAGGCCAATGGTGAGCGGCATTCGAGTGAGGACTCG
GAGGACAGCGAGGAATATGAAGAGTACGAGTGGGCGGGACAGAAGCGCAT
TCGCGTCTCCACTCTCGTGCAAGGAGGCTATTCCGCCCTGGGCCTGGGCC
AGAGAATCAAATACAATGGCAGTCAGCAGGCGCAGGACGACGAGGACGAA
GATCTCAACGTGGACGAGGATGACACTCACATCTATGGTCCTACGCAGTA
TGGCGAGGGCGATGTGATCCCACTGGTCAACGAGGACACAGAGGGAAATG
TTTCCGAGGCGGATGTTACCAGCTACGTGCGCCGACTTATCTCCTCCAGC
GATGGGCCCAAGCAAACCATTCCAGCGAAGCCACCGAGCAAGAGCCCTGC
AGC
BO09515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-PA | 1197 | CG4813-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
| CG4813-PA | 1197 | CG4813-RA | 848..881 | 863..896 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-RA | 1531 | CG4813-RA | 146..1026 | 17..896 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22725389..22726269 | 896..17 | 4355 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:13:52 has no hits.
BO09515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:50 Download gff for
BO09515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:32 Download gff for
BO09515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:43 Download gff for
BO09515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 111..1001 | 12..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:54:21 Download gff for
BO09515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 143..1033 | 12..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:54:21 Download gff for
BO09515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22725382..22726272 | 12..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:43 Download gff for
BO09515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18551104..18551994 | 12..903 | 99 | | Minus |
BO09515.complete Sequence
1228 bp (1228 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631520
> BO09515.complete
GAAGTTATCAGTCGACATGGCTACGGACACGGTGTCCAACGGCGAGAACT
TCGCCCAGCACTTGAGCAGAAACAGCGACGACGACGTGATCTGTCCCACA
TGCGACGTGAAGATCAAGCGCAGTCAGGTGGCCGATCACTGCCAAGTGGA
GATGGAGCGATTGCACAATCCCATTAGCGCTGTCACTCCACCGACCCCAA
CTAGCGGAGCAACCGCGTCCGAGGAATCCGGTTCGGTATCGGGGGGCAGA
CAACCGTGGAGCGTGTTCCAGCGGGTGCAGCGCAATCGGCAGGCCCGTCA
GCGCCAGCGCACCAGGAAGCGTCCGGCTTCTCCTGCCCCACCAGCAACTG
TAAATCCTACGGTAGCAGCTGCTCCTCCTCCAGCTGCAGCAACTCCGTCC
GTAGCTGCTGCCGAATCGAGCCAACCCACCTGTCCCGTGTGCAACCACAA
CTTTCCGCAGTCCAACATCCAAGAGCATGTTAATCATTGCCTGCGCCAGA
GCCGCCGCAATGGTCAGGCCAATGGTGAGCGGCATTCGAGTGAGGACTCG
GAGGACAGCGAGGAATATGAAGAGTACGAGTGGGCGGGACAGAAGCGCAT
TCGCGTCTCCACTCTCGTGCAAGGAGGCTATTCCGCCCTGGGCCTGGGCC
AGAGAATCAAATACAATGGCAGTCAGCAGGCGCAGGACGACGAGGACGAA
GATCTCAACGTGGACGAGGATGACACTCACATCTATGGTCCTACGCAGTA
TGGCGAGGGCGATGTGATCCCACTGGTCAACGAGGACACAGAGGGAAATG
TTTCCGAGGCGGATGTTACCAGCTACGTGCGCCGACTTATCTCCTCCAGC
GATGGGCCCAAGCCAAACCATTCCAGCGAAGCCACCGAGCAAGAGCCTGC
CAGCACAAGCAACGTGGAGGCTCCACCAGCCAGCGAGGAGCCGTCTACGT
CGCGGTCCACGCGATCCACCTCCCAAAACCAGCAGCAGATCATCGAATCG
CTGAAGGCCAAGCTGCGGCTCTACGAAAAGCAGGCGCAGGGCAAGTACAA
GTGCCTGATCTGCATCGACGACTACAAGAATCCCGCCATCTCCGTGTCCT
GCTGGCACGTCCACTGCGAGCAGTGTTGGTTGCAGACGCTCGGCGCGCGA
AAGCTGTGCCCGCAGTGCAACTCGATTACCACGCCGAAGGACCTGCGACG
AATCTACCTGGCAAGCTTTCTAGACCAT
BO09515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-RA | 1197 | CG4813-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-RA | 1531 | CG4813-RA | 146..1339 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22725076..22726269 | 1210..17 | 5970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:53:51 has no hits.
BO09515.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:16 Download gff for
BO09515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 1..1197 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:20 Download gff for
BO09515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 629..1825 | 12..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:47 Download gff for
BO09515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 114..1307 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:16 Download gff for
BO09515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 629..1825 | 12..1210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:53 Download gff for
BO09515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4813-RA | 146..1339 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:53 Download gff for
BO09515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22725074..22726269 | 17..1212 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:47 Download gff for
BO09515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18550796..18551991 | 17..1212 | 99 | | Minus |
BO09515.pep Sequence
Translation from 16 to 1228
> BO09515.pep
MATDTVSNGENFAQHLSRNSDDDVICPTCDVKIKRSQVADHCQVEMERLH
NPISAVTPPTPTSGATASEESGSVSGGRQPWSVFQRVQRNRQARQRQRTR
KRPASPAPPATVNPTVAAAPPPAAATPSVAAAESSQPTCPVCNHNFPQSN
IQEHVNHCLRQSRRNGQANGERHSSEDSEDSEEYEEYEWAGQKRIRVSTL
VQGGYSALGLGQRIKYNGSQQAQDDEDEDLNVDEDDTHIYGPTQYGEGDV
IPLVNEDTEGNVSEADVTSYVRRLISSSDGPKPNHSSEATEQEPASTSNV
EAPPASEEPSTSRSTRSTSQNQQQIIESLKAKLRLYEKQAQGKYKCLICI
DDYKNPAISVSCWHVHCEQCWLQTLGARKLCPQCNSITTPKDLRRIYLAS
FLDH
BO09515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4813-PA | 398 | CG4813-PA | 1..398 | 1..398 | 2111 | 100 | Plus |
