Clone BO09521 Report

Search the DGRC for BO09521

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG4386-RA
Protein status:BO09521.pep: Imported from assembly
Sequenced Size:1150

Clone Sequence Records

BO09521.3prime Sequence

929 bp (863 high quality bases) assembled on 2006-01-23

> BO09521.3prime
ATGGTCTAGAAAGCTTGCCTTGATCTTCTTGGTCTCCTGCTGGCAGAGGC
AAGCCTGTTTGGTGAGGTTCTTGATCCAGGTTCCGTAGCGATTCACTCTG
GCATAGACGCCAGGATAACCGGCCTTGGCACAGCCCTCGCCCCACGAGAC
AACGCCGGCGATCTGATGCTCTCGCGTTCCGCTGGCCACGATGTGCAAAG
GACCTCCACTGTCGCCCTGGCACGAGTCCTTGCCACCCTCGTCGTATCCG
CCACACAGCATGTTATCCGTGATCTTGTTGCCATAGCGACTCTTGCGACA
TTCGTCCTGCGATAGAATTGGCACTTGAACCTCCTGAAGAGTATCGGAAG
TGGGTCCACCAACTTTGAGCGCTCCCCAGCCAGTGACAATGCCATTCTCG
CCCTTGAAACTTCTGCCCGGCGTTGGCATACAAACGGGATGGAGCACCTC
GTTGAACTCCACCGGCTCATCCAACTTGATGATGGCTATATCGTTGTCAT
AGTTCCGGGCATTATACTTGGGATGCGTGATCACCTCGGCCACCTTGCGG
TCGATCTTTTGCATGTGCGACATCTTGCGGTCATGTTCGAGTAATCTCAC
CGATATTCTTTCCTTTCGAAAGCCATAGACGCAATGCGATGCGGTCAACA
GGAATTGATCGTTGAGCAAGGAGGCGGCGCAATAGAACCTTCCGCCATAT
AGCAACATAGCCACCCAGGGATACTGATGAACCTCCGTTTCCTGACCACC
GACTATTCTCTTCTGTATATTGGCTATTCCGCAGACACAGTCGCTGCAAT
TCCTTGGCGGATTCAAAGTGGGTGGGGCCGGAGTGGTTGCCCTTCTCGTT
GTAGTGGTGCTGGAAGACGGGGCTGGTGTGGTGGTGGATTGTGGTAGATG
CCGCGTCCGGCATCATAGAGCTGCTGCTC

BO09521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4386-PA 1119 CG4386-RA 250..1116 885..19 4335 100 Minus
CG4386-PA 1119 CG4386-RA 207..246 929..890 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4386-RA 1510 CG4386-RA 280..1189 929..19 4515 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21800030..21800625 333..929 2920 99.7 Plus
2R 25286936 2R 21799651..21799972 19..340 1595 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 22:17:06 has no hits.

BO09521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:59 Download gff for BO09521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4386-PA 207..1119 18..929 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:45 Download gff for BO09521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4386-PA 207..1119 18..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:19 Download gff for BO09521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4386-RA 280..1193 13..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:32 Download gff for BO09521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4386-RA 280..1193 13..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:32 Download gff for BO09521.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21799647..21799965 13..333 99 <- Plus
2R 21800031..21800625 334..929 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:19 Download gff for BO09521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17687152..17687470 13..333 99 <- Plus
arm_2R 17687536..17688130 334..929 99   Plus

BO09521.5prime Sequence

918 bp (772 high quality bases) assembled on 2006-01-23

> BO09521.5prime
GAAGTTATCAGTCGTCATGAATCGAGCCTGGTTGTGTCTGCTGATCTGCC
TGGCCTTAAGCTGCGGTCCAAGCCAATCAGCCAGCCAGGATCGTGCAACG
AACCAAACGGCAGCGAGTCCGCTGCTGAAACAATCTCAGAACACATTTAT
CCAATGGGTTCTCTCACTTTTGCCCCAACGTCCCGGCAGTTCGGATTCGG
AAAATGCCACTCTGGCCACCTTGAGCAGCAGCTCTATGATGCCGGACGCG
GCATCTACCACATCAACCACCACACCAGCCCCGTCTTCCAGCACCACTAC
AACGAGAAGGGCAACCACTCCGGCCCCACCCACTTTGAATCCGCCAAGGA
ATTGCAGCGACTGTGTCTGCGGAATAGCCAATATACAGAAGAGAATAGTC
GGTGGTCAGGAAACGGAGGTTCATCAGTATCCCTGGGTGGCTATGTTGCT
ATATGGCGGAAGGTTCTATTGCGCCGCCTCCTTGCTCAACGATCAATTCC
TGTTGACCGCATCGCATTGCGTCTATGGCTTTCGAAAGGAAAGAATATCG
GTGAGATTACTCGAACATGACCGCAAGATGTCGCACATGCAAAAGATCGA
CCGCAAGGTGGCCGAGGTGATCACGCATCCCAAGTATAATGCCCGGAACT
ATGACAACGATATAGCCATCATCAAGTTGGATGAGCCGGTGGAGTTCAAC
GAGGTGCTCCATCCCGTTTGTATGCCAACGCCGGGCAGAAGTTTCAAGGG
CGAGAATGGCATTGTCACTGGCTGGGGAGCGCTCAAAGTTGGTGGACCCA
CTTCCGATACTCTTCAGGAGGTTCAAGTGCCAATTCTATCGCANGACGAA
TGTCGCAAGAGTCGCTATGGCAACAAGATCACNGATAACATGCTGTGTGG
CGGATACGACGAGGGTGG

BO09521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4386-PA 1119 CG4386-RA 1..902 17..918 4472 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4386-RA 1510 CG4386-RA 74..975 17..918 4488 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21800030..21800831 818..17 4010 100 Minus
2R 25286936 2R 21799865..21799972 918..811 503 97.2 Minus
Blast to na_te.dros performed on 2015-02-04 03:53:37 has no hits.

BO09521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:00 Download gff for BO09521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4386-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:47 Download gff for BO09521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4386-PA 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:57:41 Download gff for BO09521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4386-RA 68..975 10..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:40 Download gff for BO09521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4386-RA 68..975 10..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:40 Download gff for BO09521.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21799865..21799965 818..918 98 <- Minus
2R 21800031..21800837 10..817 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:57:41 Download gff for BO09521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17687370..17687470 818..918 98 <- Minus
arm_2R 17687536..17688342 10..817 99   Minus

BO09521.complete Sequence

1150 bp assembled on 2008-08-15

GenBank Submission: FJ631521

> BO09521.complete
GAAGTTATCAGTCGTCATGAATCGAGCCTGGTTGTGTCTGCTGATCTGCC
TGGCCTTAAGCTGCGGTCCAAGCCAATCAGCCAGCCAGGATCGTGCAACG
AACCAAACGGCAGCGAGTCCGCTGCTGAAACAATCTCAGAACACATTTAT
CCAATGGGTTCTCTCACTTTTGCCCCAACGTCCCGGCAGTTCGGATTCGG
AAAATGCCACTCTGGCCACCTTGAGCAGCAGCTCTATGATGCCGGACGCG
GCATCTACCACATCAACCACCACACCAGCCCCGTCTTCCAGCACCACTAC
AACGAGAAGGGCAACCACTCCGGCCCCACCCACTTTGAATCCGCCAAGGA
ATTGCAGCGACTGTGTCTGCGGAATAGCCAATATACAGAAGAGAATAGTC
GGTGGTCAGGAAACGGAGGTTCATCAGTATCCCTGGGTGGCTATGTTGCT
ATATGGCGGAAGGTTCTATTGCGCCGCCTCCTTGCTCAACGATCAATTCC
TGTTGACCGCATCGCATTGCGTCTATGGCTTTCGAAAGGAAAGAATATCG
GTGAGATTACTCGAACATGACCGCAAGATGTCGCACATGCAAAAGATCGA
CCGCAAGGTGGCCGAGGTGATCACGCATCCCAAGTATAATGCCCGGAACT
ATGACAACGATATAGCCATCATCAAGTTGGATGAGCCGGTGGAGTTCAAC
GAGGTGCTCCATCCCGTTTGTATGCCAACGCCGGGCAGAAGTTTCAAGGG
CGAGAATGGCATTGTCACTGGCTGGGGAGCGCTCAAAGTTGGTGGACCCA
CTTCCGATACTCTTCAGGAGGTTCAAGTGCCAATTCTATCGCAGGACGAA
TGTCGCAAGAGTCGCTATGGCAACAAGATCACGGATAACATGCTGTGTGG
CGGATACGACGAGGGTGGCAAGGACTCGTGCCAGGGCGACAGTGGAGGTC
CTTTGCACATCGTGGCCAGCGGAACGCGAGAGCATCAGATCGCCGGCGTT
GTCTCGTGGGGCGAGGGCTGTGCCAAGGCCGGTTATCCTGGCGTCTATGC
CAGAGTGAATCGCTACGGAACCTGGATCAAGAACCTCACCAAACAGGCTT
GCCTCTGCCAGCAGGAGACCAAGAAGATCAAGGCAAGCTTTCTAGACCAT

BO09521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4386-RA 1119 CG4386-PA 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4386-RA 1510 CG4386-RA 74..1189 17..1132 5580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21800030..21800831 818..17 4010 100 Minus
2R 25286936 2R 21799651..21799972 1132..811 1595 99.7 Minus
Blast to na_te.dros performed on 2014-11-26 15:45:35 has no hits.

BO09521.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:07 Download gff for BO09521.complete
Subject Subject Range Query Range Percent Splice Strand
CG4386-RA 64..1189 10..1138 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:48 Download gff for BO09521.complete
Subject Subject Range Query Range Percent Splice Strand
CG4386-RA 74..1189 17..1134 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:06 Download gff for BO09521.complete
Subject Subject Range Query Range Percent Splice Strand
CG4386-RA 70..1185 17..1134 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:04 Download gff for BO09521.complete
Subject Subject Range Query Range Percent Splice Strand
CG4386-RA 74..1189 17..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:04 Download gff for BO09521.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21799647..21799965 818..1134 99 <- Minus
2R 21800031..21800831 17..817 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:48 Download gff for BO09521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17687152..17687470 818..1134 99 <- Minus
arm_2R 17687536..17688336 17..817 100   Minus

BO09521.pep Sequence

Translation from 16 to 1150

> BO09521.pep
MNRAWLCLLICLALSCGPSQSASQDRATNQTAASPLLKQSQNTFIQWVLS
LLPQRPGSSDSENATLATLSSSSMMPDAASTTSTTTPAPSSSTTTTRRAT
TPAPPTLNPPRNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRF
YCAASLLNDQFLLTASHCVYGFRKERISVRLLEHDRKMSHMQKIDRKVAE
VITHPKYNARNYDNDIAIIKLDEPVEFNEVLHPVCMPTPGRSFKGENGIV
TGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITDNMLCGGYDEG
GKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY
GTWIKNLTKQACLCQQETKKIKASFLDH

BO09521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4386-PA 372 CG4386-PA 1..372 1..372 1986 100 Plus
CG18735-PA 364 CG18735-PA 22..323 53..366 893 54.1 Plus
CG9294-PB 352 CG9294-PB 6..344 10..364 710 42.1 Plus
CG3355-PA 314 CG3355-PA 54..313 104..365 612 45.9 Plus
CG11836-PI 281 CG11836-PI 30..280 111..364 600 44.5 Plus