Clone Sequence Records
BO09521.3prime Sequence
929 bp (863 high quality bases) assembled on 2006-01-23
> BO09521.3prime
ATGGTCTAGAAAGCTTGCCTTGATCTTCTTGGTCTCCTGCTGGCAGAGGC
AAGCCTGTTTGGTGAGGTTCTTGATCCAGGTTCCGTAGCGATTCACTCTG
GCATAGACGCCAGGATAACCGGCCTTGGCACAGCCCTCGCCCCACGAGAC
AACGCCGGCGATCTGATGCTCTCGCGTTCCGCTGGCCACGATGTGCAAAG
GACCTCCACTGTCGCCCTGGCACGAGTCCTTGCCACCCTCGTCGTATCCG
CCACACAGCATGTTATCCGTGATCTTGTTGCCATAGCGACTCTTGCGACA
TTCGTCCTGCGATAGAATTGGCACTTGAACCTCCTGAAGAGTATCGGAAG
TGGGTCCACCAACTTTGAGCGCTCCCCAGCCAGTGACAATGCCATTCTCG
CCCTTGAAACTTCTGCCCGGCGTTGGCATACAAACGGGATGGAGCACCTC
GTTGAACTCCACCGGCTCATCCAACTTGATGATGGCTATATCGTTGTCAT
AGTTCCGGGCATTATACTTGGGATGCGTGATCACCTCGGCCACCTTGCGG
TCGATCTTTTGCATGTGCGACATCTTGCGGTCATGTTCGAGTAATCTCAC
CGATATTCTTTCCTTTCGAAAGCCATAGACGCAATGCGATGCGGTCAACA
GGAATTGATCGTTGAGCAAGGAGGCGGCGCAATAGAACCTTCCGCCATAT
AGCAACATAGCCACCCAGGGATACTGATGAACCTCCGTTTCCTGACCACC
GACTATTCTCTTCTGTATATTGGCTATTCCGCAGACACAGTCGCTGCAAT
TCCTTGGCGGATTCAAAGTGGGTGGGGCCGGAGTGGTTGCCCTTCTCGTT
GTAGTGGTGCTGGAAGACGGGGCTGGTGTGGTGGTGGATTGTGGTAGATG
CCGCGTCCGGCATCATAGAGCTGCTGCTC
BO09521.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4386-PA | 1119 | CG4386-RA | 250..1116 | 885..19 | 4335 | 100 | Minus |
CG4386-PA | 1119 | CG4386-RA | 207..246 | 929..890 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4386-RA | 1510 | CG4386-RA | 280..1189 | 929..19 | 4515 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21800030..21800625 | 333..929 | 2920 | 99.7 | Plus |
2R | 25286936 | 2R | 21799651..21799972 | 19..340 | 1595 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:17:06 has no hits.
BO09521.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:12:59 Download gff for
BO09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-PA | 207..1119 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:45 Download gff for
BO09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-PA | 207..1119 | 18..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:19 Download gff for
BO09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-RA | 280..1193 | 13..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:32 Download gff for
BO09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-RA | 280..1193 | 13..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:32 Download gff for
BO09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21799647..21799965 | 13..333 | 99 | <- | Plus |
2R | 21800031..21800625 | 334..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:19 Download gff for
BO09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17687152..17687470 | 13..333 | 99 | <- | Plus |
arm_2R | 17687536..17688130 | 334..929 | 99 | | Plus |
BO09521.5prime Sequence
918 bp (772 high quality bases) assembled on 2006-01-23
> BO09521.5prime
GAAGTTATCAGTCGTCATGAATCGAGCCTGGTTGTGTCTGCTGATCTGCC
TGGCCTTAAGCTGCGGTCCAAGCCAATCAGCCAGCCAGGATCGTGCAACG
AACCAAACGGCAGCGAGTCCGCTGCTGAAACAATCTCAGAACACATTTAT
CCAATGGGTTCTCTCACTTTTGCCCCAACGTCCCGGCAGTTCGGATTCGG
AAAATGCCACTCTGGCCACCTTGAGCAGCAGCTCTATGATGCCGGACGCG
GCATCTACCACATCAACCACCACACCAGCCCCGTCTTCCAGCACCACTAC
AACGAGAAGGGCAACCACTCCGGCCCCACCCACTTTGAATCCGCCAAGGA
ATTGCAGCGACTGTGTCTGCGGAATAGCCAATATACAGAAGAGAATAGTC
GGTGGTCAGGAAACGGAGGTTCATCAGTATCCCTGGGTGGCTATGTTGCT
ATATGGCGGAAGGTTCTATTGCGCCGCCTCCTTGCTCAACGATCAATTCC
TGTTGACCGCATCGCATTGCGTCTATGGCTTTCGAAAGGAAAGAATATCG
GTGAGATTACTCGAACATGACCGCAAGATGTCGCACATGCAAAAGATCGA
CCGCAAGGTGGCCGAGGTGATCACGCATCCCAAGTATAATGCCCGGAACT
ATGACAACGATATAGCCATCATCAAGTTGGATGAGCCGGTGGAGTTCAAC
GAGGTGCTCCATCCCGTTTGTATGCCAACGCCGGGCAGAAGTTTCAAGGG
CGAGAATGGCATTGTCACTGGCTGGGGAGCGCTCAAAGTTGGTGGACCCA
CTTCCGATACTCTTCAGGAGGTTCAAGTGCCAATTCTATCGCANGACGAA
TGTCGCAAGAGTCGCTATGGCAACAAGATCACNGATAACATGCTGTGTGG
CGGATACGACGAGGGTGG
BO09521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4386-PA | 1119 | CG4386-RA | 1..902 | 17..918 | 4472 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4386-RA | 1510 | CG4386-RA | 74..975 | 17..918 | 4488 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21800030..21800831 | 818..17 | 4010 | 100 | Minus |
2R | 25286936 | 2R | 21799865..21799972 | 918..811 | 503 | 97.2 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:53:37 has no hits.
BO09521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:00 Download gff for
BO09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:47 Download gff for
BO09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:57:41 Download gff for
BO09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-RA | 68..975 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:40 Download gff for
BO09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-RA | 68..975 | 10..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:40 Download gff for
BO09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21799865..21799965 | 818..918 | 98 | <- | Minus |
2R | 21800031..21800837 | 10..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:57:41 Download gff for
BO09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17687370..17687470 | 818..918 | 98 | <- | Minus |
arm_2R | 17687536..17688342 | 10..817 | 99 | | Minus |
BO09521.complete Sequence
1150 bp assembled on 2008-08-15
GenBank Submission: FJ631521
> BO09521.complete
GAAGTTATCAGTCGTCATGAATCGAGCCTGGTTGTGTCTGCTGATCTGCC
TGGCCTTAAGCTGCGGTCCAAGCCAATCAGCCAGCCAGGATCGTGCAACG
AACCAAACGGCAGCGAGTCCGCTGCTGAAACAATCTCAGAACACATTTAT
CCAATGGGTTCTCTCACTTTTGCCCCAACGTCCCGGCAGTTCGGATTCGG
AAAATGCCACTCTGGCCACCTTGAGCAGCAGCTCTATGATGCCGGACGCG
GCATCTACCACATCAACCACCACACCAGCCCCGTCTTCCAGCACCACTAC
AACGAGAAGGGCAACCACTCCGGCCCCACCCACTTTGAATCCGCCAAGGA
ATTGCAGCGACTGTGTCTGCGGAATAGCCAATATACAGAAGAGAATAGTC
GGTGGTCAGGAAACGGAGGTTCATCAGTATCCCTGGGTGGCTATGTTGCT
ATATGGCGGAAGGTTCTATTGCGCCGCCTCCTTGCTCAACGATCAATTCC
TGTTGACCGCATCGCATTGCGTCTATGGCTTTCGAAAGGAAAGAATATCG
GTGAGATTACTCGAACATGACCGCAAGATGTCGCACATGCAAAAGATCGA
CCGCAAGGTGGCCGAGGTGATCACGCATCCCAAGTATAATGCCCGGAACT
ATGACAACGATATAGCCATCATCAAGTTGGATGAGCCGGTGGAGTTCAAC
GAGGTGCTCCATCCCGTTTGTATGCCAACGCCGGGCAGAAGTTTCAAGGG
CGAGAATGGCATTGTCACTGGCTGGGGAGCGCTCAAAGTTGGTGGACCCA
CTTCCGATACTCTTCAGGAGGTTCAAGTGCCAATTCTATCGCAGGACGAA
TGTCGCAAGAGTCGCTATGGCAACAAGATCACGGATAACATGCTGTGTGG
CGGATACGACGAGGGTGGCAAGGACTCGTGCCAGGGCGACAGTGGAGGTC
CTTTGCACATCGTGGCCAGCGGAACGCGAGAGCATCAGATCGCCGGCGTT
GTCTCGTGGGGCGAGGGCTGTGCCAAGGCCGGTTATCCTGGCGTCTATGC
CAGAGTGAATCGCTACGGAACCTGGATCAAGAACCTCACCAAACAGGCTT
GCCTCTGCCAGCAGGAGACCAAGAAGATCAAGGCAAGCTTTCTAGACCAT
BO09521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4386-RA | 1119 | CG4386-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4386-RA | 1510 | CG4386-RA | 74..1189 | 17..1132 | 5580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21800030..21800831 | 818..17 | 4010 | 100 | Minus |
2R | 25286936 | 2R | 21799651..21799972 | 1132..811 | 1595 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:45:35 has no hits.
BO09521.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:07 Download gff for
BO09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-RA | 64..1189 | 10..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:48 Download gff for
BO09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-RA | 74..1189 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:06 Download gff for
BO09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-RA | 70..1185 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:04 Download gff for
BO09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4386-RA | 74..1189 | 17..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:04 Download gff for
BO09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21799647..21799965 | 818..1134 | 99 | <- | Minus |
2R | 21800031..21800831 | 17..817 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:48 Download gff for
BO09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17687152..17687470 | 818..1134 | 99 | <- | Minus |
arm_2R | 17687536..17688336 | 17..817 | 100 | | Minus |
BO09521.pep Sequence
Translation from 16 to 1150
> BO09521.pep
MNRAWLCLLICLALSCGPSQSASQDRATNQTAASPLLKQSQNTFIQWVLS
LLPQRPGSSDSENATLATLSSSSMMPDAASTTSTTTPAPSSSTTTTRRAT
TPAPPTLNPPRNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRF
YCAASLLNDQFLLTASHCVYGFRKERISVRLLEHDRKMSHMQKIDRKVAE
VITHPKYNARNYDNDIAIIKLDEPVEFNEVLHPVCMPTPGRSFKGENGIV
TGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITDNMLCGGYDEG
GKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY
GTWIKNLTKQACLCQQETKKIKASFLDH
BO09521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4386-PA | 372 | CG4386-PA | 1..372 | 1..372 | 1986 | 100 | Plus |
CG18735-PA | 364 | CG18735-PA | 22..323 | 53..366 | 893 | 54.1 | Plus |
CG9294-PB | 352 | CG9294-PB | 6..344 | 10..364 | 710 | 42.1 | Plus |
CG3355-PA | 314 | CG3355-PA | 54..313 | 104..365 | 612 | 45.9 | Plus |
CG11836-PI | 281 | CG11836-PI | 30..280 | 111..364 | 600 | 44.5 | Plus |