Clone Sequence Records
BO09522.3prime Sequence
888 bp (886 high quality bases) assembled on 2006-01-23
> BO09522.3prime
ATGGTCTAGAAAGCTTGCATCCTTGCAATAGCTGGAGCGCAGGACATTTT
CAGCGCCCGTGAGAATGGCTCCTTCGTGCTGAGGACATAACTTTAGGTAT
AGGTCGCTGGACTCCATCGCCTCGATGAGGATGTACTCCAAGTAGATACG
CGGCGCGGATAGGATGCGCCATGTGAGTGGATTCAGTATATTGGTGGGGT
ACTCCCAATTAACAGTCGCGTACTCCGGCTCTCGGAGATTCCGTCCGGCC
ACCAAAGCTTTGTATTCATAGCCCGGCTCAAAGTACATTGCCTTCTGGGA
GAACTTCATCATCTCCGTGGCGGCTCGCTCATTTTTGCCAGCCTTCTTCA
CCAGGGCATCGTGCAGCTGAATGGACAGGATGCCCACCTCGCCGCCATGT
AGCGTACTCTCATCGTGTCCGGAAACTCGCACTGTTATCCTATAGTGCAG
TCGGCAGAAGGGCTTGCTATCTCCAGTCCATAGGTAGAAGACCCCTGGTG
AGTCGCCTTGCTGCAGCTGGCCAAGATCAACCTGCTCCTGGTAATCCTCC
TGGCTGTGGTAGCCCATTCGCAGGCACGTGTGGCCCGGCTCCTCGCAACT
GGTGCACTTCGTGTCCTTAAAGCTCTCGAAAGAATCACAGGTTATTCCAA
GGAAAGGACACTGCGAGCCGATGCTTTCCGTAAAATACTGCTGACTGCGA
ATGTGATTGCAGCCGAGGAACTCCTGCATGGTGAGGAACAGCGTCTTCTT
CTTGACCACATCCTGGAACTTCTTGTTGCAGCCGGGATTATCGAAACCAC
CGTTGGGAAAGAAGTCCACATGTCCCAGTCGCATATTGATGCCAAGCCCG
CCTTTCATCAGGGGATTGGCATCCGTGTGCACAATGTC
BO09522.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-PA | 1623 | CG5966-RA | 751..1620 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-RB | 3751 | CG5966-RB | 2332..3201 | 888..19 | 4350 | 100 | Minus |
CG5966-RA | 2619 | CG5966-RA | 1200..2069 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5991483..5992090 | 626..19 | 3040 | 100 | Minus |
X | 23542271 | X | 5991122..5991385 | 888..625 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:54:09 has no hits.
BO09522.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:00 Download gff for
BO09522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-PA | 751..1623 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:48 Download gff for
BO09522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-PA | 751..1623 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:31:58 Download gff for
BO09522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 1200..2072 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:05 Download gff for
BO09522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 1200..2072 | 15..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:05 Download gff for
BO09522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5991122..5991385 | 625..888 | 100 | -> | Minus |
X | 5991485..5992093 | 15..624 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:31:58 Download gff for
BO09522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5885155..5885418 | 625..888 | 100 | -> | Minus |
arm_X | 5885518..5886126 | 15..624 | 99 | | Minus |
BO09522.5prime Sequence
845 bp (844 high quality bases) assembled on 2006-01-23
> BO09522.5prime
GAAGTTATCAGTCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGC
TGCAGACCATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAAC
ACCCTGGTGGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAA
ATGCTTCGGAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGG
TGACCCGTTCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCC
CATTTCACACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGA
TCTCAATGATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCA
AGATATTCCTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGG
ATGTGGGACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGC
ATCCGTGGTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCC
AGGCGGTTGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTG
CACATGCTGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACAT
CATTGGTCACTCACTGGGTGCCCATCTGTCCGGCTATGCCGGCTATCACC
TGCAGCACGACTTTGGACTGAAACCGGCCAGGATAACGGGTCTGGATCCG
GCTGCTCCTCTCTTCACGGACACCGATCCCATCGTGCGGCTGGACAAGAC
GGATGCCCACTTCGTGGACATTGTGCACACGGATGCCAATCCCCTGATGA
AAGGCGGGCTTGGCATCAATATGCGACTGGGACATGTGGACTTCT
BO09522.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-PA | 1623 | CG5966-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-RA | 2619 | CG5966-RA | 450..1278 | 17..845 | 4145 | 100 | Plus |
CG5966-RB | 3751 | CG5966-RB | 1699..2410 | 134..845 | 3560 | 100 | Plus |
CG5966-RB | 3751 | CG5966-RB | 450..567 | 17..134 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5990489..5991200 | 134..845 | 3560 | 100 | Plus |
X | 23542271 | X | 5989240..5989357 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:32:09 has no hits.
BO09522.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:01 Download gff for
BO09522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:50 Download gff for
BO09522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:52 Download gff for
BO09522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 446..1278 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:57 Download gff for
BO09522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 446..1278 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:57 Download gff for
BO09522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5989236..5989357 | 9..134 | 96 | -> | Plus |
X | 5990490..5991200 | 135..845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:52 Download gff for
BO09522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5883269..5883390 | 9..134 | 96 | -> | Plus |
arm_X | 5884523..5885233 | 135..845 | 100 | | Plus |
BO09522.complete Sequence
1654 bp (1654 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631522
> BO09522.complete
GAAGTTATCAGTCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGC
TGCAGACCATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAAC
ACCCTGGTGGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAA
ATGCTTCGGAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGG
TGACCCGTTCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCC
CATTTCACACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGA
TCTCAATGATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCA
AGATATTCCTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGG
ATGTGGGACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGC
ATCCGTGGTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCC
AGGCGGTTGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTG
CACATGCTGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACAT
CATTGGTCACTCACTGGGTGCCCATCTGTCCGGCTATGCCGGCTATCACC
TGCAGCACGACTTTGGACTGAAACCGGCCAGGATAACGGGTCTGGATCCG
GCTGCTCCTCTCTTCACGGACACCGATCCCATCGTGCGGCTGGACAAGAC
GGATGCCCACTTCGTGGACATTGTGCACACGGATGCCAATCCCCTGATGA
AAGGCGGGCTTGGCATCAATATGCGACTGGGACATGTGGACTTCTTTCCC
AACGGTGGTTTCGATAATCCCGGCTGCAACAAGAAGTTCCAGGATGTGGT
CAAGAAGAAGACGCTGTTCCTCACCATGCAGGAGTTCCTCGGCTGCAATC
ACATTCGCAGTCAGCAGTATTTTACGGAAAGCATCGGCTCGCAGTGTCCT
TTCCTTGGAATAACCTGTGATTCTTTCGAGAGCTTTAAGGACACGAAGTG
CACCAGTTGCGAGGAGCCGGGCCACACGTGCCTGCGAATGGGCTACCACA
GCCAGGAGGATTACCAGGAGCAGGTTGATCTTGGCCAGCTGCAGCAAGGC
GACTCACCAGGGGTCTTCTACCTATGGACTGGAGATAGCAAGCCCTTCTG
CCGACTGCACTATAGGATAACAGTGCGAGTTTCCGGACACGATGAGAGTA
CGCTACATGGCGGCGAGGTGGGCATCCTGTCCATTCAGCTGCACGATGCC
CTGGTGAAGAAGGCTGGCAAAAATGAGCGAGCCGCCACGGAGATGATGAA
GTTCTCCCAGAAGGCAATGTACTTTGAGCCGGGCTATGAATACAAAGCTT
TGGTGGCCGGACGGAATCTCCGAGAGCCGGAGTACGCGACTGTTAATTGG
GAGTACCCCACCAATATACTGAATCCACTCACATGGCGCATCCTATCCGC
GCCGCGTATCTACTTGGAGTACATCCTCATCGAGGCGATGGAGTCCAGCG
ACCTATACCTAAAGTTATGTCCTCAGCACGAAGGAGCCATTCTCACGGGC
GCTGAAAATGTCCTGCGCTCCAGCTATTGCAAGGATGCAAGCTTTCTAGA
CCAT
BO09522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-RA | 1623 | CG5966-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
CG5966-RB | 1311 | CG5966-PB | 1..1308 | 329..1636 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-RA | 2619 | CG5966-RA | 450..2069 | 17..1636 | 8100 | 100 | Plus |
CG5966-RB | 3751 | CG5966-RB | 1699..3201 | 134..1636 | 7515 | 100 | Plus |
CG5966-RB | 3751 | CG5966-RB | 450..567 | 17..134 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5990489..5991385 | 134..1030 | 4485 | 100 | Plus |
X | 23542271 | X | 5991483..5992090 | 1029..1636 | 3040 | 100 | Plus |
X | 23542271 | X | 5989240..5989357 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:20 has no hits.
BO09522.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:03 Download gff for
BO09522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 1..1623 | 17..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:28 Download gff for
BO09522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 425..2051 | 9..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:52 Download gff for
BO09522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 450..2069 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:03 Download gff for
BO09522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 425..2051 | 9..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:27 Download gff for
BO09522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5966-RA | 450..2069 | 17..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:27 Download gff for
BO09522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5990490..5991385 | 135..1030 | 100 | -> | Plus |
X | 5989240..5989357 | 17..134 | 100 | -> | Plus |
X | 5991485..5992090 | 1031..1638 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:52 Download gff for
BO09522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5883273..5883390 | 17..134 | 100 | -> | Plus |
arm_X | 5884523..5885418 | 135..1030 | 100 | -> | Plus |
arm_X | 5885518..5886123 | 1031..1638 | 99 | | Plus |
BO09522.pep Sequence
Translation from 16 to 1654
> BO09522.pep
MYVANTTGGLMLQTMLYLANHTSRAAVNTLVDLPPAPKSDINEVKCFGVY
GCFPINGPWNTVTRSINVHPQKPSEIEPHFTLHTRRALDQPKYLDLNDPE
SVQGMGMNPKGKIFLLVHGYLESGEIPWMWDMAKALLAHEPEGRASVVLI
DWGGGASPPYVQAVANIRLVGAITAHVVHMLYEELRLPNLDNVHIIGHSL
GAHLSGYAGYHLQHDFGLKPARITGLDPAAPLFTDTDPIVRLDKTDAHFV
DIVHTDANPLMKGGLGINMRLGHVDFFPNGGFDNPGCNKKFQDVVKKKTL
FLTMQEFLGCNHIRSQQYFTESIGSQCPFLGITCDSFESFKDTKCTSCEE
PGHTCLRMGYHSQEDYQEQVDLGQLQQGDSPGVFYLWTGDSKPFCRLHYR
ITVRVSGHDESTLHGGEVGILSIQLHDALVKKAGKNERAATEMMKFSQKA
MYFEPGYEYKALVAGRNLREPEYATVNWEYPTNILNPLTWRILSAPRIYL
EYILIEAMESSDLYLKLCPQHEGAILTGAENVLRSSYCKDASFLDH
BO09522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5966-PA | 540 | CG5966-PA | 1..540 | 1..540 | 2917 | 100 | Plus |
CG5966-PB | 436 | CG5966-PB | 1..436 | 105..540 | 2354 | 100 | Plus |
CG6847-PB | 1000 | CG6847-PB | 73..478 | 46..409 | 439 | 30.1 | Plus |
CG6847-PA | 1000 | CG6847-PA | 73..478 | 46..409 | 439 | 30.1 | Plus |
CG6472-PB | 389 | CG6472-PB | 46..329 | 80..396 | 351 | 33.6 | Plus |