Clone BO09522 Report

Search the DGRC for BO09522

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG5966-RA
Protein status:BO09522.pep: validated full length
Sequenced Size:1654

Clone Sequence Records

BO09522.3prime Sequence

888 bp (886 high quality bases) assembled on 2006-01-23

> BO09522.3prime
ATGGTCTAGAAAGCTTGCATCCTTGCAATAGCTGGAGCGCAGGACATTTT
CAGCGCCCGTGAGAATGGCTCCTTCGTGCTGAGGACATAACTTTAGGTAT
AGGTCGCTGGACTCCATCGCCTCGATGAGGATGTACTCCAAGTAGATACG
CGGCGCGGATAGGATGCGCCATGTGAGTGGATTCAGTATATTGGTGGGGT
ACTCCCAATTAACAGTCGCGTACTCCGGCTCTCGGAGATTCCGTCCGGCC
ACCAAAGCTTTGTATTCATAGCCCGGCTCAAAGTACATTGCCTTCTGGGA
GAACTTCATCATCTCCGTGGCGGCTCGCTCATTTTTGCCAGCCTTCTTCA
CCAGGGCATCGTGCAGCTGAATGGACAGGATGCCCACCTCGCCGCCATGT
AGCGTACTCTCATCGTGTCCGGAAACTCGCACTGTTATCCTATAGTGCAG
TCGGCAGAAGGGCTTGCTATCTCCAGTCCATAGGTAGAAGACCCCTGGTG
AGTCGCCTTGCTGCAGCTGGCCAAGATCAACCTGCTCCTGGTAATCCTCC
TGGCTGTGGTAGCCCATTCGCAGGCACGTGTGGCCCGGCTCCTCGCAACT
GGTGCACTTCGTGTCCTTAAAGCTCTCGAAAGAATCACAGGTTATTCCAA
GGAAAGGACACTGCGAGCCGATGCTTTCCGTAAAATACTGCTGACTGCGA
ATGTGATTGCAGCCGAGGAACTCCTGCATGGTGAGGAACAGCGTCTTCTT
CTTGACCACATCCTGGAACTTCTTGTTGCAGCCGGGATTATCGAAACCAC
CGTTGGGAAAGAAGTCCACATGTCCCAGTCGCATATTGATGCCAAGCCCG
CCTTTCATCAGGGGATTGGCATCCGTGTGCACAATGTC

BO09522.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-PA 1623 CG5966-RA 751..1620 888..19 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-RB 3751 CG5966-RB 2332..3201 888..19 4350 100 Minus
CG5966-RA 2619 CG5966-RA 1200..2069 888..19 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5991483..5992090 626..19 3040 100 Minus
X 23542271 X 5991122..5991385 888..625 1320 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:54:09 has no hits.

BO09522.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:00 Download gff for BO09522.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-PA 751..1623 15..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:48 Download gff for BO09522.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-PA 751..1623 15..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:31:58 Download gff for BO09522.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 1200..2072 15..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:05 Download gff for BO09522.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 1200..2072 15..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:05 Download gff for BO09522.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5991122..5991385 625..888 100 -> Minus
X 5991485..5992093 15..624 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:31:58 Download gff for BO09522.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5885155..5885418 625..888 100 -> Minus
arm_X 5885518..5886126 15..624 99   Minus

BO09522.5prime Sequence

845 bp (844 high quality bases) assembled on 2006-01-23

> BO09522.5prime
GAAGTTATCAGTCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGC
TGCAGACCATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAAC
ACCCTGGTGGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAA
ATGCTTCGGAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGG
TGACCCGTTCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCC
CATTTCACACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGA
TCTCAATGATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCA
AGATATTCCTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGG
ATGTGGGACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGC
ATCCGTGGTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCC
AGGCGGTTGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTG
CACATGCTGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACAT
CATTGGTCACTCACTGGGTGCCCATCTGTCCGGCTATGCCGGCTATCACC
TGCAGCACGACTTTGGACTGAAACCGGCCAGGATAACGGGTCTGGATCCG
GCTGCTCCTCTCTTCACGGACACCGATCCCATCGTGCGGCTGGACAAGAC
GGATGCCCACTTCGTGGACATTGTGCACACGGATGCCAATCCCCTGATGA
AAGGCGGGCTTGGCATCAATATGCGACTGGGACATGTGGACTTCT

BO09522.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-PA 1623 CG5966-RA 1..829 17..845 4145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-RA 2619 CG5966-RA 450..1278 17..845 4145 100 Plus
CG5966-RB 3751 CG5966-RB 1699..2410 134..845 3560 100 Plus
CG5966-RB 3751 CG5966-RB 450..567 17..134 590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5990489..5991200 134..845 3560 100 Plus
X 23542271 X 5989240..5989357 17..134 590 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:32:09 has no hits.

BO09522.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:01 Download gff for BO09522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:17:50 Download gff for BO09522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:52 Download gff for BO09522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 446..1278 9..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:57 Download gff for BO09522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 446..1278 9..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:57 Download gff for BO09522.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5989236..5989357 9..134 96 -> Plus
X 5990490..5991200 135..845 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:52 Download gff for BO09522.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5883269..5883390 9..134 96 -> Plus
arm_X 5884523..5885233 135..845 100   Plus

BO09522.complete Sequence

1654 bp (1654 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631522

> BO09522.complete
GAAGTTATCAGTCGACATGTATGTGGCCAACACGACGGGCGGCCTAATGC
TGCAGACCATGTTGTATTTGGCCAACCACACCAGTCGGGCGGCAGTCAAC
ACCCTGGTGGACCTACCACCAGCTCCCAAAAGTGACATCAACGAGGTAAA
ATGCTTCGGAGTGTATGGCTGTTTTCCGATCAATGGACCCTGGAACACGG
TGACCCGTTCGATAAATGTGCATCCGCAGAAGCCTTCGGAGATCGAGCCC
CATTTCACACTGCACACGCGAAGGGCATTGGATCAGCCCAAGTATCTGGA
TCTCAATGATCCAGAAAGCGTTCAAGGCATGGGAATGAATCCCAAGGGCA
AGATATTCCTGCTTGTCCATGGATACCTGGAGTCCGGTGAAATTCCCTGG
ATGTGGGACATGGCCAAGGCGCTGCTGGCCCACGAGCCCGAGGGTCGGGC
ATCCGTGGTCCTCATCGATTGGGGCGGTGGCGCTAGTCCGCCGTATGTCC
AGGCGGTTGCCAATATCCGGCTAGTGGGCGCCATCACCGCCCATGTGGTG
CACATGCTGTACGAGGAGTTGCGTCTTCCGAATCTGGACAATGTGCACAT
CATTGGTCACTCACTGGGTGCCCATCTGTCCGGCTATGCCGGCTATCACC
TGCAGCACGACTTTGGACTGAAACCGGCCAGGATAACGGGTCTGGATCCG
GCTGCTCCTCTCTTCACGGACACCGATCCCATCGTGCGGCTGGACAAGAC
GGATGCCCACTTCGTGGACATTGTGCACACGGATGCCAATCCCCTGATGA
AAGGCGGGCTTGGCATCAATATGCGACTGGGACATGTGGACTTCTTTCCC
AACGGTGGTTTCGATAATCCCGGCTGCAACAAGAAGTTCCAGGATGTGGT
CAAGAAGAAGACGCTGTTCCTCACCATGCAGGAGTTCCTCGGCTGCAATC
ACATTCGCAGTCAGCAGTATTTTACGGAAAGCATCGGCTCGCAGTGTCCT
TTCCTTGGAATAACCTGTGATTCTTTCGAGAGCTTTAAGGACACGAAGTG
CACCAGTTGCGAGGAGCCGGGCCACACGTGCCTGCGAATGGGCTACCACA
GCCAGGAGGATTACCAGGAGCAGGTTGATCTTGGCCAGCTGCAGCAAGGC
GACTCACCAGGGGTCTTCTACCTATGGACTGGAGATAGCAAGCCCTTCTG
CCGACTGCACTATAGGATAACAGTGCGAGTTTCCGGACACGATGAGAGTA
CGCTACATGGCGGCGAGGTGGGCATCCTGTCCATTCAGCTGCACGATGCC
CTGGTGAAGAAGGCTGGCAAAAATGAGCGAGCCGCCACGGAGATGATGAA
GTTCTCCCAGAAGGCAATGTACTTTGAGCCGGGCTATGAATACAAAGCTT
TGGTGGCCGGACGGAATCTCCGAGAGCCGGAGTACGCGACTGTTAATTGG
GAGTACCCCACCAATATACTGAATCCACTCACATGGCGCATCCTATCCGC
GCCGCGTATCTACTTGGAGTACATCCTCATCGAGGCGATGGAGTCCAGCG
ACCTATACCTAAAGTTATGTCCTCAGCACGAAGGAGCCATTCTCACGGGC
GCTGAAAATGTCCTGCGCTCCAGCTATTGCAAGGATGCAAGCTTTCTAGA
CCAT

BO09522.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-RA 1623 CG5966-PA 1..1620 17..1636 8100 100 Plus
CG5966-RB 1311 CG5966-PB 1..1308 329..1636 6540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-RA 2619 CG5966-RA 450..2069 17..1636 8100 100 Plus
CG5966-RB 3751 CG5966-RB 1699..3201 134..1636 7515 100 Plus
CG5966-RB 3751 CG5966-RB 450..567 17..134 590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5990489..5991385 134..1030 4485 100 Plus
X 23542271 X 5991483..5992090 1029..1636 3040 100 Plus
X 23542271 X 5989240..5989357 17..134 590 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:16:20 has no hits.

BO09522.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:03 Download gff for BO09522.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 1..1623 17..1640 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:28 Download gff for BO09522.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 425..2051 9..1640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:52 Download gff for BO09522.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 450..2069 17..1638 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:03 Download gff for BO09522.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 425..2051 9..1640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:27 Download gff for BO09522.complete
Subject Subject Range Query Range Percent Splice Strand
CG5966-RA 450..2069 17..1638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:27 Download gff for BO09522.complete
Subject Subject Range Query Range Percent Splice Strand
X 5990490..5991385 135..1030 100 -> Plus
X 5989240..5989357 17..134 100 -> Plus
X 5991485..5992090 1031..1638 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:52 Download gff for BO09522.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5883273..5883390 17..134 100 -> Plus
arm_X 5884523..5885418 135..1030 100 -> Plus
arm_X 5885518..5886123 1031..1638 99   Plus

BO09522.pep Sequence

Translation from 16 to 1654

> BO09522.pep
MYVANTTGGLMLQTMLYLANHTSRAAVNTLVDLPPAPKSDINEVKCFGVY
GCFPINGPWNTVTRSINVHPQKPSEIEPHFTLHTRRALDQPKYLDLNDPE
SVQGMGMNPKGKIFLLVHGYLESGEIPWMWDMAKALLAHEPEGRASVVLI
DWGGGASPPYVQAVANIRLVGAITAHVVHMLYEELRLPNLDNVHIIGHSL
GAHLSGYAGYHLQHDFGLKPARITGLDPAAPLFTDTDPIVRLDKTDAHFV
DIVHTDANPLMKGGLGINMRLGHVDFFPNGGFDNPGCNKKFQDVVKKKTL
FLTMQEFLGCNHIRSQQYFTESIGSQCPFLGITCDSFESFKDTKCTSCEE
PGHTCLRMGYHSQEDYQEQVDLGQLQQGDSPGVFYLWTGDSKPFCRLHYR
ITVRVSGHDESTLHGGEVGILSIQLHDALVKKAGKNERAATEMMKFSQKA
MYFEPGYEYKALVAGRNLREPEYATVNWEYPTNILNPLTWRILSAPRIYL
EYILIEAMESSDLYLKLCPQHEGAILTGAENVLRSSYCKDASFLDH

BO09522.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5966-PA 540 CG5966-PA 1..540 1..540 2917 100 Plus
CG5966-PB 436 CG5966-PB 1..436 105..540 2354 100 Plus
CG6847-PB 1000 CG6847-PB 73..478 46..409 439 30.1 Plus
CG6847-PA 1000 CG6847-PA 73..478 46..409 439 30.1 Plus
CG6472-PB 389 CG6472-PB 46..329 80..396 351 33.6 Plus