Clone BO09534 Report

Search the DGRC for BO09534

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptGs1-RB
Protein status:BO09534.pep: validated full length
Sequenced Size:1231

Clone Sequence Records

BO09534.3prime Sequence

950 bp (825 high quality bases) assembled on 2006-01-23

> BO09534.3prime
ATGGTCTAGAAAGCTTGCCTCGTTGAGCAGGCAGGTGCGAACAATGGCGT
TGCACACGGCGTAGGGATCACAGTTGGAGCTTGGCCGCCGGTCTTCGAGG
TATCCTTTGCCGGCCGTCGCAACGCCACGCGGCACTCGCACACTTACGGC
CCGGTTGGCCACGCCCCAAGAAAACTTATCGATGCTAGAAGTCTCAAGAC
GTCCCACGAGGCGCCGTTCATTGTCTTTGCCTTCCTTGGGGTCGTATGCC
TTGATGTGCCGCTCGTGGCGCTTGCTCAGCTTCTCGATAGCTTCCTCGAT
GGCCTTGATTCCGCCATCAGCACGCATCTCCTTTGTGGAAAAGTTGGTAT
GCGCGCCGGCTCCGTTCCACTGACCCTCCATCGGTTTGGGGTCAAAGGTG
ACCACTACGCCATACTCCTCAGCTATGCGCTGCAAAATATATCGCGACAC
CCATAAATCGTCACATGCCTTAATCCCGGCTGGACCAATTTGGAACTCCC
ACTGCGCGGGCATTACCTCGGCATTGGTGCCGGCGAAGTCGATCCCAGCA
TACAGGCAGGCCACGACGTGGGCCTCCACAAGATCGCGAGCGTACACACG
GTCAGCTCCCACGCCGCAGTAGTAAGGACCTTGTGGGGCTGGGAAACCGT
TCTCCGGCCAGCCGAAGGGACGTCCGTCCACGTCTAATAAAGTGTATTCT
TGCTCAATGCCGAACCAGGGCTCCTGATCGCTAATTAGGTCAATGGCTGC
CTGGAACGCGGCACGCTTGTTGGACGCCGTCGGCTTGCCGTCGGCGCTGT
AGGTGTCGCACAGGACAATTACGTCGTTCTTTCCCGGCTTAAAGGGATCG
CGATATATGGCGCGTGGCTTGAGCGTGGTGTCCGAGTTCTCGGCATGGGC
CTGGTAGGTGGAACTGCCGTCGTACTGCCAATCCGGCAAGTCCTCCACGG

BO09534.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2718-PC 1200 Gs1-RC 266..1197 950..19 4635 99.8 Minus
CG2718-PB 1200 Gs1-RB 266..1197 950..19 4635 99.8 Minus
CG1743-PA 801 Gs2-RA 281..323 533..491 165 95.3 Minus
CG1743-PB 1110 Gs2-RB 590..632 533..491 165 95.3 Minus
CG1743-PC 1110 Gs2-RC 590..632 533..491 165 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RD 1699 CG2718-RD 452..1383 950..19 4645 99.9 Minus
Gs1-RB 2176 CG2718-RB 452..1383 950..19 4645 99.9 Minus
Gs1-RC 2396 CG2718-RC 672..1603 950..19 4645 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 132748..133679 950..19 4645 99.9 Minus
X 23542271 X 11428742..11428856 725..611 215 79.1 Minus
X 23542271 X 11428985..11429088 594..491 205 79.8 Minus
Blast to na_te.dros performed on 2015-02-12 18:17:29 has no hits.

BO09534.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:23 Download gff for BO09534.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-PC 266..1200 18..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:19 Download gff for BO09534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2718-PB 266..1200 18..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:57 Download gff for BO09534.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 672..1609 12..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:23 Download gff for BO09534.3prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 672..1609 12..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:23 Download gff for BO09534.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 132748..133685 12..950 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:57 Download gff for BO09534.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 132748..133685 12..950 99   Minus

BO09534.5prime Sequence

964 bp (811 high quality bases) assembled on 2006-01-23

> BO09534.5prime
GAAGTTATCAGTCGACATGGCACTACGCGTGGCAGGACTCTTCCTGAAGA
AGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTACTGGC
AATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGA
CAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAATCGAG
TGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTC
AAGGATCGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGA
TTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCATGGCGAGAACTCGG
ACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGA
AAGAACGACGTAATTGTCCTGTGCGACACCTACAGCGCCGACGGCAAGCC
GACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTAATTA
GCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGAC
GTGGACGGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACA
AGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATC
TTGTGGAGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCC
GGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAGTTCCAAATTGGTCC
AGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGC
AGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGAACCCAAACCG
ATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCAACTTTTTCACAAA
GGAGATGCGTGCTGATGGCGGAATCAAGGCCATCGAGGAAGCTATCGAGA
AACTGAGCAAGCGC

BO09534.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2718-PC 1200 Gs1-RC 1..948 17..964 4665 99.6 Plus
CG2718-PB 1200 Gs1-RB 1..948 17..964 4665 99.6 Plus
CG1743-PA 801 Gs2-RA 281..323 699..741 165 95.3 Plus
CG1743-PB 1110 Gs2-RB 590..632 699..741 165 95.3 Plus
CG1743-PC 1110 Gs2-RC 590..632 699..741 165 95.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RD 1699 CG2718-RD 187..1134 17..964 4695 99.7 Plus
Gs1-RB 2176 CG2718-RB 187..1134 17..964 4695 99.7 Plus
Gs1-RC 2396 CG2718-RC 407..1354 17..964 4695 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 132483..133430 17..964 4695 99.7 Plus
X 23542271 X 11428742..11428856 507..621 215 79.1 Plus
X 23542271 X 11428985..11429088 638..741 205 79.8 Plus
Blast to na_te.dros performed on 2015-02-12 19:58:11 has no hits.

BO09534.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:24 Download gff for BO09534.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-PC 1..948 17..964 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:21 Download gff for BO09534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2718-PB 1..948 17..964 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:19 Download gff for BO09534.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 407..1354 17..964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:18 Download gff for BO09534.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 407..1354 17..964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:18 Download gff for BO09534.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 132483..133430 17..964 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:19 Download gff for BO09534.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 132483..133430 17..964 99   Plus

BO09534.complete Sequence

1231 bp (1231 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631523

> BO09534.complete
GAAGTTATCAGTCGACATGGCACTACGCGTGGCAGGACTCTTCCTGAAGA
AGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTACTGGC
AATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGA
CAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAATCGAG
TGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTC
AAGGATCGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGA
TTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCATGGCGAGAACTCGG
ACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGA
AAGAACGACGTAATTGTCCTGTGCGACACCTACAGCGCCGACGGCAAGCC
GACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTAATTA
GCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGAC
GTGGACGGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACA
AGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATC
TTGTGGAGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCC
GGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAGTTCCAAATTGGTCC
AGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGC
AGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGACCCCAAACCG
ATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCAACTTTTCCACAAA
GGAGATGCGTGCTGATGGCGGAATCAAGGCCATCGAGGAAGCTATCGAGA
AGCTGAGCAAGCGCCACGAGCGGCACATCAAGGCATACGACCCCAAGGAA
GGCAAAGACAATGAACGGCGCCTCGTGGGACGTCTTGAGACTTCTAGCAT
CGATAAGTTTTCTTGGGGCGTGGCCAACCGGGCCGTAAGTGTGCGAGTGC
CGCGTGGCGTTGCGACGGCCGGCAAAGGATACCTCGAAGACCGGCGGCCA
AGCTCCAACTGTGATCCCTACGCCGTGTGCAACGCCATTGTTCGCACCTG
CCTGCTCAACGAGGCAAGCTTTCTAGACCAT

BO09534.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RD 1200 CG2718-PD 1..1197 17..1213 5985 100 Plus
Gs1-RB 1200 CG2718-PB 1..1197 17..1213 5985 100 Plus
Gs1-RC 1200 CG2718-PC 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-RD 1699 CG2718-RD 187..1383 17..1213 5985 100 Plus
Gs1-RB 2176 CG2718-RB 187..1383 17..1213 5985 100 Plus
Gs1-RC 2396 CG2718-RC 407..1603 17..1213 5985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 132483..133679 17..1213 5985 100 Plus
X 23542271 X 11428742..11428856 507..621 215 79.1 Plus
X 23542271 X 11428985..11429088 638..741 205 79.8 Plus
Blast to na_te.dros performed on 2014-11-27 08:56:26 has no hits.

BO09534.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:04 Download gff for BO09534.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 1..1200 17..1214 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:30 Download gff for BO09534.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 204..1406 17..1220 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:07 Download gff for BO09534.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 407..1603 17..1215 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:04 Download gff for BO09534.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RB 204..1406 17..1220 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:04 Download gff for BO09534.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1-RC 407..1603 17..1215 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:04 Download gff for BO09534.complete
Subject Subject Range Query Range Percent Splice Strand
2L 132483..133679 17..1215 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:07 Download gff for BO09534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 132483..133679 17..1215 99   Plus

BO09534.pep Sequence

Translation from 16 to 1231

> BO09534.pep
MALRVAGLFLKKELVAPATQQLRLLRTGNTTRSQFLANSPNTALDKSILQ
RYRNLETPANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDG
SSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNK
RAAFQAAIDLISDQEPWFGIEQEYTLLDVDGRPFGWPENGFPAPQGPYYC
GVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPAGIKA
CDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRAD
GGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSW
GVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLLNEA
SFLDH

BO09534.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1-PD 399 CG2718-PD 1..399 1..399 2117 100 Plus
Gs1-PB 399 CG2718-PB 1..399 1..399 2117 100 Plus
Gs1-PC 399 CG2718-PC 1..399 1..399 2117 100 Plus
Gs2-PB 369 CG1743-PB 3..369 33..399 1303 64.9 Plus
Gs2-PF 369 CG1743-PF 3..369 33..399 1302 64.7 Plus