Clone Sequence Records
BO09534.3prime Sequence
950 bp (825 high quality bases) assembled on 2006-01-23
> BO09534.3prime
ATGGTCTAGAAAGCTTGCCTCGTTGAGCAGGCAGGTGCGAACAATGGCGT
TGCACACGGCGTAGGGATCACAGTTGGAGCTTGGCCGCCGGTCTTCGAGG
TATCCTTTGCCGGCCGTCGCAACGCCACGCGGCACTCGCACACTTACGGC
CCGGTTGGCCACGCCCCAAGAAAACTTATCGATGCTAGAAGTCTCAAGAC
GTCCCACGAGGCGCCGTTCATTGTCTTTGCCTTCCTTGGGGTCGTATGCC
TTGATGTGCCGCTCGTGGCGCTTGCTCAGCTTCTCGATAGCTTCCTCGAT
GGCCTTGATTCCGCCATCAGCACGCATCTCCTTTGTGGAAAAGTTGGTAT
GCGCGCCGGCTCCGTTCCACTGACCCTCCATCGGTTTGGGGTCAAAGGTG
ACCACTACGCCATACTCCTCAGCTATGCGCTGCAAAATATATCGCGACAC
CCATAAATCGTCACATGCCTTAATCCCGGCTGGACCAATTTGGAACTCCC
ACTGCGCGGGCATTACCTCGGCATTGGTGCCGGCGAAGTCGATCCCAGCA
TACAGGCAGGCCACGACGTGGGCCTCCACAAGATCGCGAGCGTACACACG
GTCAGCTCCCACGCCGCAGTAGTAAGGACCTTGTGGGGCTGGGAAACCGT
TCTCCGGCCAGCCGAAGGGACGTCCGTCCACGTCTAATAAAGTGTATTCT
TGCTCAATGCCGAACCAGGGCTCCTGATCGCTAATTAGGTCAATGGCTGC
CTGGAACGCGGCACGCTTGTTGGACGCCGTCGGCTTGCCGTCGGCGCTGT
AGGTGTCGCACAGGACAATTACGTCGTTCTTTCCCGGCTTAAAGGGATCG
CGATATATGGCGCGTGGCTTGAGCGTGGTGTCCGAGTTCTCGGCATGGGC
CTGGTAGGTGGAACTGCCGTCGTACTGCCAATCCGGCAAGTCCTCCACGG
BO09534.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2718-PC | 1200 | Gs1-RC | 266..1197 | 950..19 | 4635 | 99.8 | Minus |
CG2718-PB | 1200 | Gs1-RB | 266..1197 | 950..19 | 4635 | 99.8 | Minus |
CG1743-PA | 801 | Gs2-RA | 281..323 | 533..491 | 165 | 95.3 | Minus |
CG1743-PB | 1110 | Gs2-RB | 590..632 | 533..491 | 165 | 95.3 | Minus |
CG1743-PC | 1110 | Gs2-RC | 590..632 | 533..491 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-RD | 1699 | CG2718-RD | 452..1383 | 950..19 | 4645 | 99.9 | Minus |
Gs1-RB | 2176 | CG2718-RB | 452..1383 | 950..19 | 4645 | 99.9 | Minus |
Gs1-RC | 2396 | CG2718-RC | 672..1603 | 950..19 | 4645 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 132748..133679 | 950..19 | 4645 | 99.9 | Minus |
X | 23542271 | X | 11428742..11428856 | 725..611 | 215 | 79.1 | Minus |
X | 23542271 | X | 11428985..11429088 | 594..491 | 205 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:17:29 has no hits.
BO09534.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:23 Download gff for
BO09534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-PC | 266..1200 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:19 Download gff for
BO09534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2718-PB | 266..1200 | 18..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:05:57 Download gff for
BO09534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 672..1609 | 12..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:23 Download gff for
BO09534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 672..1609 | 12..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:23 Download gff for
BO09534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 132748..133685 | 12..950 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:05:57 Download gff for
BO09534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 132748..133685 | 12..950 | 99 | | Minus |
BO09534.5prime Sequence
964 bp (811 high quality bases) assembled on 2006-01-23
> BO09534.5prime
GAAGTTATCAGTCGACATGGCACTACGCGTGGCAGGACTCTTCCTGAAGA
AGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTACTGGC
AATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGA
CAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAATCGAG
TGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTC
AAGGATCGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGA
TTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCATGGCGAGAACTCGG
ACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGA
AAGAACGACGTAATTGTCCTGTGCGACACCTACAGCGCCGACGGCAAGCC
GACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTAATTA
GCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGAC
GTGGACGGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACA
AGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATC
TTGTGGAGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCC
GGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAGTTCCAAATTGGTCC
AGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGC
AGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGAACCCAAACCG
ATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCAACTTTTTCACAAA
GGAGATGCGTGCTGATGGCGGAATCAAGGCCATCGAGGAAGCTATCGAGA
AACTGAGCAAGCGC
BO09534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2718-PC | 1200 | Gs1-RC | 1..948 | 17..964 | 4665 | 99.6 | Plus |
CG2718-PB | 1200 | Gs1-RB | 1..948 | 17..964 | 4665 | 99.6 | Plus |
CG1743-PA | 801 | Gs2-RA | 281..323 | 699..741 | 165 | 95.3 | Plus |
CG1743-PB | 1110 | Gs2-RB | 590..632 | 699..741 | 165 | 95.3 | Plus |
CG1743-PC | 1110 | Gs2-RC | 590..632 | 699..741 | 165 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-RD | 1699 | CG2718-RD | 187..1134 | 17..964 | 4695 | 99.7 | Plus |
Gs1-RB | 2176 | CG2718-RB | 187..1134 | 17..964 | 4695 | 99.7 | Plus |
Gs1-RC | 2396 | CG2718-RC | 407..1354 | 17..964 | 4695 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 132483..133430 | 17..964 | 4695 | 99.7 | Plus |
X | 23542271 | X | 11428742..11428856 | 507..621 | 215 | 79.1 | Plus |
X | 23542271 | X | 11428985..11429088 | 638..741 | 205 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:58:11 has no hits.
BO09534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:24 Download gff for
BO09534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-PC | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:21 Download gff for
BO09534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2718-PB | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:23:19 Download gff for
BO09534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 407..1354 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:18 Download gff for
BO09534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 407..1354 | 17..964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:18 Download gff for
BO09534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 132483..133430 | 17..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:23:19 Download gff for
BO09534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 132483..133430 | 17..964 | 99 | | Plus |
BO09534.complete Sequence
1231 bp (1231 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631523
> BO09534.complete
GAAGTTATCAGTCGACATGGCACTACGCGTGGCAGGACTCTTCCTGAAGA
AGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTACTGGC
AATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGA
CAAGAGCATTCTGCAGAGGTACCGCAACCTGGAAACGCCGGCCAATCGAG
TGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTC
AAGGATCGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGA
TTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCATGGCGAGAACTCGG
ACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGA
AAGAACGACGTAATTGTCCTGTGCGACACCTACAGCGCCGACGGCAAGCC
GACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTAATTA
GCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGAC
GTGGACGGACGTCCCTTCGGCTGGCCGGAGAACGGTTTCCCAGCCCCACA
AGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATC
TTGTGGAGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCC
GGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAGTTCCAAATTGGTCC
AGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGC
AGCGCATAGCTGAGGAGTATGGCGTAGTGGTCACCTTTGACCCCAAACCG
ATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCAACTTTTCCACAAA
GGAGATGCGTGCTGATGGCGGAATCAAGGCCATCGAGGAAGCTATCGAGA
AGCTGAGCAAGCGCCACGAGCGGCACATCAAGGCATACGACCCCAAGGAA
GGCAAAGACAATGAACGGCGCCTCGTGGGACGTCTTGAGACTTCTAGCAT
CGATAAGTTTTCTTGGGGCGTGGCCAACCGGGCCGTAAGTGTGCGAGTGC
CGCGTGGCGTTGCGACGGCCGGCAAAGGATACCTCGAAGACCGGCGGCCA
AGCTCCAACTGTGATCCCTACGCCGTGTGCAACGCCATTGTTCGCACCTG
CCTGCTCAACGAGGCAAGCTTTCTAGACCAT
BO09534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-RD | 1200 | CG2718-PD | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Gs1-RB | 1200 | CG2718-PB | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Gs1-RC | 1200 | CG2718-PC | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-RD | 1699 | CG2718-RD | 187..1383 | 17..1213 | 5985 | 100 | Plus |
Gs1-RB | 2176 | CG2718-RB | 187..1383 | 17..1213 | 5985 | 100 | Plus |
Gs1-RC | 2396 | CG2718-RC | 407..1603 | 17..1213 | 5985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 132483..133679 | 17..1213 | 5985 | 100 | Plus |
X | 23542271 | X | 11428742..11428856 | 507..621 | 215 | 79.1 | Plus |
X | 23542271 | X | 11428985..11429088 | 638..741 | 205 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:56:26 has no hits.
BO09534.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:04 Download gff for
BO09534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RB | 1..1200 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:30 Download gff for
BO09534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RB | 204..1406 | 17..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:07 Download gff for
BO09534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 407..1603 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:04 Download gff for
BO09534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RB | 204..1406 | 17..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:04 Download gff for
BO09534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gs1-RC | 407..1603 | 17..1215 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:04 Download gff for
BO09534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 132483..133679 | 17..1215 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:07 Download gff for
BO09534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 132483..133679 | 17..1215 | 99 | | Plus |
BO09534.pep Sequence
Translation from 16 to 1231
> BO09534.pep
MALRVAGLFLKKELVAPATQQLRLLRTGNTTRSQFLANSPNTALDKSILQ
RYRNLETPANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDG
SSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNK
RAAFQAAIDLISDQEPWFGIEQEYTLLDVDGRPFGWPENGFPAPQGPYYC
GVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPAGIKA
CDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRAD
GGIKAIEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSW
GVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLLNEA
SFLDH
BO09534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gs1-PD | 399 | CG2718-PD | 1..399 | 1..399 | 2117 | 100 | Plus |
Gs1-PB | 399 | CG2718-PB | 1..399 | 1..399 | 2117 | 100 | Plus |
Gs1-PC | 399 | CG2718-PC | 1..399 | 1..399 | 2117 | 100 | Plus |
Gs2-PB | 369 | CG1743-PB | 3..369 | 33..399 | 1303 | 64.9 | Plus |
Gs2-PF | 369 | CG1743-PF | 3..369 | 33..399 | 1302 | 64.7 | Plus |