Clone Sequence Records
BO09537.3prime Sequence
832 bp (756 high quality bases) assembled on 2006-01-23
> BO09537.3prime
ATGGTCTAGAAAGCTTGCGTGCTTGTAATGAGTAAGGTGATCAATCATCA
TGTACAGCCACTTGGGCTGATCGTGAGGAGCCATGTGCCCGGCATTGCGG
ACCATGATCTCCACAAGATGTCCGGCGTGCTTGACATAGCCGGCCACTTC
CTTCCCAACGCGCCACACTTCGCGGGGAGCCACCTTGTACTTGTCCGAGC
CGGGGAACTTTAGTTGGTTGAGATAATTGCGCGTCAGTGGATAGGCAACA
ATAATGTCTAGCTGCCCGCTGTAGATGCACACAGTATAGTGGGCCAGCAG
TTCGGCTATCCACGGGGCCACCGAGTCCATGATATCCTTCTTCAAGTGAA
GTTCCACCTTGTTCTCCTTGTCCAGATCATGGAATGTCTTATTGCCCACA
TGAATTGCCCGCCGAGTGGCGCCCGCCTGCAGAAATTCGCCCAAGTTGGC
GCCATCATCATCATGCGTCTTCAAGTAGTTGTAGTACCAGTTGTATCCAG
TAAGGTTGCTGAACAGTGAGCCATTGGTAAGGTCCCCGTTGATTAGGGAA
TCAAATACGTCAAAGGCGCACTCCATGTCGTGACTCTTAATGCATTCAGC
ACCCTTTGCCTCGGCATCGTGGAAACTCTGCAGTCCGTGCTCGTCGATCA
GGCCCAGCTGGTAGAGATAGTCACCGTACTTCATCTGATGCAGCGGATCC
GAGAGACCATTTCCGATGGCCACGCCCTTGAGCGGCACATAGACGCGGGT
CTCTATGGCATTTTGTACCTTGTGGATGTGGTAAGCCAGCGCGGGAACGT
ATTTTCCGGCATAAGACTCGCCGGTGACCCAG
BO09537.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4572-PA | 1449 | CG4572-RA | 633..1446 | 832..19 | 3970 | 99.5 | Minus |
| CG4572-PB | 1449 | CG4572-RB | 633..1446 | 832..19 | 3970 | 99.5 | Minus |
| CG4572-PC | 1449 | CG4572-RC | 633..1446 | 832..19 | 3970 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4572-RD | 1744 | CG4572-RD | 723..1536 | 832..19 | 4010 | 99.5 | Minus |
| CG4572-RB | 1877 | CG4572-RB | 856..1669 | 832..19 | 4010 | 99.5 | Minus |
| CG4572-RA | 1793 | CG4572-RA | 772..1585 | 832..19 | 4010 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19862725..19863538 | 19..832 | 4010 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:38:05 has no hits.
BO09537.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:28 Download gff for
BO09537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-PC | 633..1449 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:28 Download gff for
BO09537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-PC | 633..1449 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:09 Download gff for
BO09537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RA | 772..1585 | 19..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:05 Download gff for
BO09537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RA | 772..1585 | 19..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:05 Download gff for
BO09537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19862725..19863538 | 19..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:09 Download gff for
BO09537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15688447..15689260 | 19..832 | 99 | | Plus |
BO09537.5prime Sequence
867 bp (765 high quality bases) assembled on 2006-01-23
> BO09537.5prime
GAAGTTATCAGTCGACATGAAAACTGCAACTCATTGCGCATTTTTAATTA
TCGCGACTATAGTCGCAATAAGCGGAGCAAAAGGAGTAGAGGGGGAACGC
CCCTACAGGCGGAGCTTCATCAATCCGTATCCACGCTACCAGTTCTTTGA
CGATGGTGTCGATCCCGGGGAGCCCCTGTTCCTGACGCCCCTGATCAACA
ATGCTTCGATGAGCAAGCAAGAGGTTCAAAAGCTGGCCCGCGTCGTAGGC
TCCCAGTTCCATGGCGTTGAGAGCTACTCCGGCTATTTGACCGTGGACCC
TGGCTTCAAATCCAACATGTTCTTCTGGTACTTCCCCGCCGAGCAGGAGC
CGGAATATGCGCCAGTGGTCCTGTGGCTTCAGGGTGGACCAGGTGCCTCC
TCGCTCTTCGGTTTGTTCACAGAGAATGGACCACTAGAGTTGGATGGTCA
TGGGAAGCTTCAGAAACGCAACTATACCTGGAGCAAGACACACAATCTCA
TCTACATTGACAATCCCGTGGGCACTGGCTTTAGTTTTACAGAGAACGAT
GCCGGCTATGCTACGAACGAGAAGGATGTGGGCCGCAATCTGCACGAGGC
TGTGATGCAGCTGTACGAACTCTTCGAGTGGAGCAACTCCTCTGGTTTCT
GGGTCACCGGCGAGTCCTATGCCGGAAAATACGTTCCCGCCCTGGCTTAC
CACATCCACAAGGTACAAAATGCCATAGAGACCCGCGTCTATGTGCCGCT
CAAGGGCGTGGCCATCGGAAATGGTCTCTCGGATCCGCTGCATCAGCTGA
AGTACGGTGACTATCTCTACCAGCTGGGCCTGATCGACGAGCACGGACTG
CAGAGTTTCCACGATGC
BO09537.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4572-PA | 1449 | CG4572-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
| CG4572-PB | 1449 | CG4572-RB | 1..851 | 17..867 | 4255 | 100 | Plus |
| CG4572-PC | 1449 | CG4572-RC | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4572-RD | 1744 | CG4572-RD | 91..941 | 17..867 | 4255 | 100 | Plus |
| CG4572-RB | 1877 | CG4572-RB | 224..1074 | 17..867 | 4255 | 100 | Plus |
| CG4572-RA | 1793 | CG4572-RA | 140..990 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19863320..19864170 | 867..17 | 4255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:26:57 has no hits.
BO09537.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:30 Download gff for
BO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-PC | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:29 Download gff for
BO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-PC | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:02 Download gff for
BO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RA | 130..990 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:54 Download gff for
BO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RA | 130..990 | 9..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:54 Download gff for
BO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19863320..19864180 | 9..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:02 Download gff for
BO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15689042..15689902 | 9..867 | 99 | | Minus |
BO09537.complete Sequence
1480 bp (1480 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631524
> BO09537.complete
GAAGTTATCAGTCGACATGAAAACTGCAACTCATTGCGCATTTTTAATTA
TCGCGACTATAGTCGCAATAAGCGGAGCAAAAGGAGTAGAGGGGGAACGC
CCCTACAGGCGGAGCTTCATCAATCCGTATCCACGCTACCAGTTCTTTGA
CGATGGTGTCGATCCCGGGGAGCCCCTGTTCCTGACGCCCCTGATCAACA
ATGCTTCGATGAGCAAGCAAGAGGTTCAAAAGCTGGCCCGCGTCGTAGGC
TCCCAGTTCCATGGCGTTGAGAGCTACTCCGGCTATTTGACCGTGGACCC
TGGCTTCAAATCCAACATGTTCTTCTGGTACTTCCCCGCCGAGCAGGAGC
CGGAATATGCGCCAGTGGTCCTGTGGCTTCAGGGTGGACCAGGTGCCTCC
TCGCTCTTCGGTTTGTTCACAGAGAATGGACCACTAGAGTTGGATGGTCA
TGGGAAGCTTCAGAAACGCAACTATACCTGGAGCAAGACACACAATCTCA
TCTACATTGACAATCCCGTGGGCACTGGCTTTAGTTTTACAGAGAACGAT
GCCGGCTATGCTACGAACGAGAAGGATGTGGGCCGCAATCTGCACGAGGC
TGTGATGCAGCTGTACGAACTCTTCGAGTGGAGCAACTCCTCTGGTTTCT
GGGTCACCGGCGAGTCCTATGCCGGAAAATACGTTCCCGCCCTGGCTTAC
CACATCCACAAGGTACAAAATGCCATAGAGACCCGCGTCTATGTGCCGCT
CAAGGGCGTGGCCATCGGAAATGGTCTCTCGGATCCGCTGCATCAGCTGA
AGTACGGTGACTATCTCTACCAGCTGGGCCTGATCGACGAGCACGGACTG
CAGAGTTTCCACGATGCCGAGGCAAAGGGTGCTGAATGCATTAAGAGTCA
CGACATGGAGTGCGCCTTCGACGTATTTGATTCCCTAATCAACGGGGACC
TTACCAATGGCTCACTGTTCAGCAACCTTACTGGATACAACTGGTACTAC
AACTACTTGAAGACGCATGATGATGATGGCGCCAACTTGGGCGAATTTCT
GCAGGCGGGCGCCACTCGGCGGGCAATTCATGTGGGCAATAAGACATTCC
ATGATCTGGACAAGGAGAACAAGGTGGAACTTCACTTGAAGAAGGATATC
ATGGACTCGGTGGCCCCGTGGATAGCCGAACTGCTGGCCCACTATACTGT
GTGCATCTACAGCGGGCAGCTAGACATTATTGTTGCCTATCCACTGACGC
GCAATTATCTCAACCAACTAAAGTTCCCCGGCTCGGACAAGTACAAGGTG
GCTCCCCGCGAAGTGTGGCGCGTTGGGAAGGAAGTGGCCGGCTATGTCAA
GCACGCCGGACATCTTGTGGAGATCATGGTCCGCAATGCCGGGCACATGG
CTCCTCACGATCAGCCCAAGTGGCTGTACATGATGATTGATCACCTTACT
CATTACAAGCACGCAAGCTTTCTAGACCAT
BO09537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4572-RD | 1449 | CG4572-PD | 1..1446 | 17..1462 | 7230 | 100 | Plus |
| CG4572-RB | 1449 | CG4572-PB | 1..1446 | 17..1462 | 7230 | 100 | Plus |
| CG4572-RA | 1449 | CG4572-PA | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4572-RD | 1744 | CG4572-RD | 91..1536 | 17..1462 | 7230 | 100 | Plus |
| CG4572-RB | 1877 | CG4572-RB | 224..1669 | 17..1462 | 7230 | 100 | Plus |
| CG4572-RA | 1793 | CG4572-RA | 140..1585 | 17..1462 | 7230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19862725..19864170 | 1462..17 | 7230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:03:42 has no hits.
BO09537.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:06 Download gff for
BO09537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RC | 1..1449 | 17..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:00 Download gff for
BO09537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RC | 84..1539 | 9..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:19 Download gff for
BO09537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RA | 140..1585 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:06 Download gff for
BO09537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RC | 84..1539 | 9..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:48 Download gff for
BO09537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4572-RA | 140..1585 | 17..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:48 Download gff for
BO09537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19862723..19864170 | 17..1464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:19 Download gff for
BO09537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15688445..15689892 | 17..1464 | 99 | | Minus |
BO09537.pep Sequence
Translation from 16 to 1480
> BO09537.pep
MKTATHCAFLIIATIVAISGAKGVEGERPYRRSFINPYPRYQFFDDGVDP
GEPLFLTPLINNASMSKQEVQKLARVVGSQFHGVESYSGYLTVDPGFKSN
MFFWYFPAEQEPEYAPVVLWLQGGPGASSLFGLFTENGPLELDGHGKLQK
RNYTWSKTHNLIYIDNPVGTGFSFTENDAGYATNEKDVGRNLHEAVMQLY
ELFEWSNSSGFWVTGESYAGKYVPALAYHIHKVQNAIETRVYVPLKGVAI
GNGLSDPLHQLKYGDYLYQLGLIDEHGLQSFHDAEAKGAECIKSHDMECA
FDVFDSLINGDLTNGSLFSNLTGYNWYYNYLKTHDDDGANLGEFLQAGAT
RRAIHVGNKTFHDLDKENKVELHLKKDIMDSVAPWIAELLAHYTVCIYSG
QLDIIVAYPLTRNYLNQLKFPGSDKYKVAPREVWRVGKEVAGYVKHAGHL
VEIMVRNAGHMAPHDQPKWLYMMIDHLTHYKHASFLDH
BO09537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4572-PD | 482 | CG4572-PD | 1..482 | 1..482 | 2612 | 100 | Plus |
| CG4572-PB | 482 | CG4572-PB | 1..482 | 1..482 | 2612 | 100 | Plus |
| CG4572-PA | 482 | CG4572-PA | 1..482 | 1..482 | 2612 | 100 | Plus |
| CG32483-PA | 439 | CG32483-PA | 17..438 | 82..480 | 414 | 29 | Plus |
| CG31821-PB | 427 | CG31821-PB | 32..421 | 89..480 | 393 | 30.7 | Plus |
