Clone Sequence Records
BO09538.3prime Sequence
896 bp (851 high quality bases) assembled on 2006-01-23
> BO09538.3prime
ATGGTCTAGAAAGCTTGCCATGCACTTGACAATGAACTCTAGGAAAGCCA
GATCCTTGTTCAGCTCGGTGACCCGCTTAAAGTGTCTCTGGACGTACGGA
GTGAGTACCTCGACCATGTTGCCATTGTAGTAGAACCTCGCCTTGGGATC
CAGAAGAGCATCTCCGATCAAGTACTTGAGGATCATGTTGCCCGCCTGCG
AATGGCGCGAGTTGGTGGTCCATGCCTTGACGTGCTGCAGCAGCGCAACC
CGCTGGTCAACGTTCAACTGGTCAACCAATTGCCGGAGACCGGGCTCATC
TCGCTTGCGGACAAAGTGGTTGATAATATCGAAACTGGCTTTGGGCTTGT
CCAGGTTCAGAGCCAACACGAAGGCCTTGTGAAGCTGCTTCTGGGCGTGC
AGAAGGGAATGTAGGGTCTGCTCCTGCTCCAATGCGGCCTGCCGCTTGTC
CAGCGCTTCGTTTCGCGTCACCTGAGTGACATCACCGAAGCGAATCAGCT
TGGAGTCCGCGCCGCCGGTGTAAAAGAACCGATTGCTCCTGGCGGATACG
GCCAGCGCCCAAACCCTATCGTTGTGCTCGTCCAGGGACTGCAGACATGT
GTTGGTCTTGATATTCCACAGCTTAAGAAGGCCATCCGAAGCAGCGGAGA
TAATGAACTTGCCGTGATCCAGGAACTCGGCTCTCAGTATGGTGCACTCC
TGATCGAAACGTTTTATGCACGAAAAATTGCTGATGGACCAGATGCGGAG
AGTACAGTCCGACGATGAGGTGAGCACGATCTGATCCACCGGAGAGAAGC
GCACACTCCACACACCGCGGGTGTGTCCCCGCAACACTCCTTGCAGCGTG
TTGGACTCCGCCAGCCACACCTTAGCCGTCTTGTCTTGCGACGCGG
BO09538.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1671-PA | 2364 | CG1671-RA | 1484..2361 | 896..19 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1671-RA | 2523 | CG1671-RA | 1548..2425 | 896..19 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9849667..9850544 | 896..19 | 4390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:06:34 has no hits.
BO09538.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:31 Download gff for
BO09538.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-PA | 1484..2364 | 18..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:30 Download gff for
BO09538.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-PA | 1484..2364 | 18..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:34:49 Download gff for
BO09538.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 1548..2435 | 6..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:05:46 Download gff for
BO09538.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 1548..2435 | 6..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:05:46 Download gff for
BO09538.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9849667..9850554 | 6..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:34:49 Download gff for
BO09538.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5737172..5738059 | 6..896 | 99 | | Minus |
BO09538.5prime Sequence
875 bp (802 high quality bases) assembled on 2006-01-23
> BO09538.5prime
GAAGTTATCAGTCGACATGCTGGCGGGTATCAGCGAGAAAAGCTATGCGG
CGGAGGCCCGCTACACGAACTTCTACGCCGGCGGCGACATCGCCTGGAGC
CCGAATGGCCATCATCTTTACTGCCTCAATGGCTCAGCTGTAAACCAGGT
GGATGTGCAGACCTCCCAAATCCTAAATAGCTACGGCTTGTCTTCCCCGT
CGGCGGATAACAAGAGGCCGGCGGAGCTGGACAATATCGATGTGGAGGAG
GATACGATTACTTGCTTCGGGCTGTCACAGGAGCATCTGGTTACTGCCCA
TCGAAGTGGCCTGCTTAGGCTGTGGCAGCTGGACACTGGGAAGCTGGTGA
AGCTGTGGAAGGCGCAGCACAAGGGACCAGTCATCCGAGTTGAGTTTAGT
CCCTGCGGCAGGCTTATCTGCACCAGCGGCGGTGCAGATGCCACACTGAG
GCTGTGGGACTACTCGAACAACAGCTGTCTGGGTGCCCTCAAGGATTTCC
CTGGTCCCGCTTGGCTCCTCGTCTTTCATCCCAATGTGCTGCGCAAAGAG
ATCTACGCCGGAGGTTCGGATAACACTGTCTATGCCTGGAACTACGAGAC
GAAGACACTTGTGCACAAGATGCGAGGTCACCTGTCGCAAGTCACCGGCT
TGAGCTTTAAGAGCAACGCGTCCGACTGCAATGAAATCGTGACTGTAAGC
CGGGACAAGGTTATGATCGTGTGGCAATTGCAGGAGCAGTTGGAAAGCAA
GCAGTTGAAGGTTCTTCCCTTGTACGATGAGCTTGAGGGAGTCGTGTACG
CAGACGAGGGACAACTGATAATCGTGGCGAGCGGATCGGGCAAGCTGCAA
CAGGTCGACCCTAAATCTTGGAAGA
BO09538.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1671-PA | 2364 | CG1671-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1671-RA | 2523 | CG1671-RA | 64..923 | 16..875 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9848208..9849042 | 41..875 | 4175 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:14:42 has no hits.
BO09538.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:32 Download gff for
BO09538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:32 Download gff for
BO09538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:38 Download gff for
BO09538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 64..922 | 16..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:30 Download gff for
BO09538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 64..922 | 16..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:30 Download gff for
BO09538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9848124..9848150 | 16..42 | 100 | -> | Plus |
| 2R | 9848210..9849041 | 43..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:38 Download gff for
BO09538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5735629..5735655 | 16..42 | 100 | -> | Plus |
| arm_2R | 5735715..5736546 | 43..874 | 100 | | Plus |
BO09538.complete Sequence
2395 bp (2395 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631525
> BO09538.complete
GAAGTTATCAGTCGACATGCTGGCGGGTATCAGCGAGAAAAGCTATGCGG
CGGAGGCCCGCTACACGAACTTCTACGCCGGCGGCGACATCGCCTGGAGC
CCGAATGGCCATCATCTTTACTGCCTCAATGGCTCAGCTGTAAACCAGGT
GGATGTGCAGACCTCCCAAATCCTAAATAGCTACGGCTTGTCTTCCCCGT
CGGCGGATAACAAGAGGCCGGCGGAGCTGGACAATATCGATGTGGAGGAG
GATACGATTACTTGCTTCGGGCTGTCACAGGAGCATCTGGTTACTGCCCA
TCGAAGTGGCCTGCTTAGGCTGTGGCAGCTGGACACTGGGAAGCTGGTGA
AGCTGTGGAAGGCGCAGCACAAGGGACCAGTCATCCGAGTTGAGTTTAGT
CCCTGCGGCAGGCTTATCTGCACCAGCGGCGGTGCAGATGCCACACTGAG
GCTGTGGGACTACTCGAACAACAGCTGTCTGGGTGCCCTCAAGGATTTCC
CTGGTCCCGCTTGGCTCCTCGTCTTTCATCCCAATGTGCTGCGCAAAGAG
ATCTACGCCGGAGGTTCGGATAACACTGTCTATGCCTGGAACTACGAGAC
GAAGACACTTGTGCACAAGATGCGAGGTCACCTGTCGCAAGTCACCGGCT
TGAGCTTTAAGAGCAACGCGTCCGACTGCAATGAAATCGTGACTGTAAGC
CGGGACAAGGTTATGATCGTGTGGCAATTGCAGGAGCAGTTGGAAAGCAA
GCAGTTGAAGGTTCTTCCCTTGTACGATGAGCTTGAGGGAGTCGTGTACG
CAGACGAGGGACAACTGATAATCGTGGCGAGCGGATCGGGCAAGCTGCAA
CAGGTCGACCCTAAATCTTGGAAGATCAGGGATATTCTTTCTCAATCTGA
TTTCCAAATTAGTAGACTGCTGCACTGCAGCGAGCTAAAACAGCTGGCCC
TGGTCACTACAGAGCAGAATATTTTGGTCTACGACGTTGAAACCCTGGAA
CCCATTAAACACTTGGTGGGTTACAACGACGAGATCCTAGACATGTGCTT
TATGGGCGAACACGATCGCTACCTGGCCGTTGCCACCAACAGCAAGCACT
TCAAGCTGTACGACACGGAACACGACATGAATTGCAAGCTGATCGTGGGT
CACTCGGATACGGTAATGTCCCTTGCTGCATCCCAAAATCTGCTGATTTC
GGTGGGAAAGGACTGCAGCGTTCGGCTTTGGAGGCTTCAGCACGACAAAG
ATTGCTCGCTTGAGGCTCTGACTCAACAGGCCAACTGCCACACGTCCACT
ATCGGTTGCGTGGCCATGACGCACAACGGAGCTACTGGCTTTGCATCCGT
GAGCCAAGATGGCAGCATGAAGGTATGGCAGCTCGTCAGAAGTAAGGAGG
ATCGCAACTCGTACTCTTTCAACCTGCGCTACGCAGCGCTTTCCCACGAC
AAGGAGGTGAACTGCGTTGCATATGCTCCGAATAACAAGCTTATTGCTAC
CGCGTCGCAAGACAAGACGGCTAAGGTGTGGCTGGCGGAGTCCAACACGC
TGCAAGGAGTGTTGCGGGGACACACCCGCGGTGTGTGGAGTGTGCGCTTC
TCTCCGGTGGATCAGATCGTGCTCACCTCATCGTCGGACTGTACTCTCCG
CATCTGGTCCATCAGCAATTTTTCGTGCATAAAACGTTTCGATCAGGAGT
GCACCATACTGAGAGCCGAGTTCCTGGATCACGGCAAGTTCATTATCTCC
GCTGCTTCGGATGGCCTTCTTAAGCTGTGGAATATCAAGACCAACACATG
TCTGCAGTCCCTGGACGAGCACAACGATAGGGTTTGGGCGCTGGCCGTAT
CCGCCAGGAGCAATCGGTTCTTTTACACCGGCGGCGCGGACTCCAAGCTG
ATTCGCTTCGGTGATGTCACTCAGGTGACGCGAAACGAAGCGCTGGACAA
GCGGCAGGCCGCATTGGAGCAGGAGCAGACCCTACATTCCCTTCTGCACG
CCCAGAAGCAGCTTCACAAGGCCTTCGTGTTGGCTCTGAACCTGGACAAG
CCCAAAGCCAGTTTCGATATTATCAACCACTTTGTCCGCAAGCGAGATGA
GCCCGGTCTCCGGCAATTGGTTGACCAGTTGAACGTTGACCAGCGGGTTG
CGCTGCTGCAGCACGTCAAGGCATGGACCACCAACTCGCGCCATTCGCAG
GCGGGCAACATGATCCTCAAGTACTTGATCGGAGATGCTCTTCTGGATCC
CAAGGCGAGGTTCTACTACAATGGCAACATGGTCGAGGTACTCACTCCGT
ACGTCCAGAGACACTTTAAGCGGGTCACCGAGCTGAACAAGGATCTGGCT
TTCCTAGAGTTCATTGTCAAGTGCATGGCAAGCTTTCTAGACCAT
BO09538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1671-RA | 2364 | CG1671-PA | 1..2361 | 17..2377 | 11805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1671-RA | 2523 | CG1671-RA | 64..2425 | 16..2377 | 11810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9848208..9850544 | 41..2377 | 11685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:21:14 has no hits.
BO09538.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:07 Download gff for
BO09538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 1..2364 | 17..2378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:01 Download gff for
BO09538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 64..2435 | 16..2390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:17 Download gff for
BO09538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 65..2425 | 17..2379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:07 Download gff for
BO09538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 64..2435 | 16..2390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:47 Download gff for
BO09538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1671-RA | 65..2425 | 17..2379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:47 Download gff for
BO09538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9848125..9848150 | 17..42 | 100 | -> | Plus |
| 2R | 9848210..9850544 | 43..2379 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:17 Download gff for
BO09538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5735630..5735655 | 17..42 | 100 | -> | Plus |
| arm_2R | 5735715..5738049 | 43..2379 | 99 | | Plus |
BO09538.pep Sequence
Translation from 16 to 2395
> BO09538.pep
MLAGISEKSYAAEARYTNFYAGGDIAWSPNGHHLYCLNGSAVNQVDVQTS
QILNSYGLSSPSADNKRPAELDNIDVEEDTITCFGLSQEHLVTAHRSGLL
RLWQLDTGKLVKLWKAQHKGPVIRVEFSPCGRLICTSGGADATLRLWDYS
NNSCLGALKDFPGPAWLLVFHPNVLRKEIYAGGSDNTVYAWNYETKTLVH
KMRGHLSQVTGLSFKSNASDCNEIVTVSRDKVMIVWQLQEQLESKQLKVL
PLYDELEGVVYADEGQLIIVASGSGKLQQVDPKSWKIRDILSQSDFQISR
LLHCSELKQLALVTTEQNILVYDVETLEPIKHLVGYNDEILDMCFMGEHD
RYLAVATNSKHFKLYDTEHDMNCKLIVGHSDTVMSLAASQNLLISVGKDC
SVRLWRLQHDKDCSLEALTQQANCHTSTIGCVAMTHNGATGFASVSQDGS
MKVWQLVRSKEDRNSYSFNLRYAALSHDKEVNCVAYAPNNKLIATASQDK
TAKVWLAESNTLQGVLRGHTRGVWSVRFSPVDQIVLTSSSDCTLRIWSIS
NFSCIKRFDQECTILRAEFLDHGKFIISAASDGLLKLWNIKTNTCLQSLD
EHNDRVWALAVSARSNRFFYTGGADSKLIRFGDVTQVTRNEALDKRQAAL
EQEQTLHSLLHAQKQLHKAFVLALNLDKPKASFDIINHFVRKRDEPGLRQ
LVDQLNVDQRVALLQHVKAWTTNSRHSQAGNMILKYLIGDALLDPKARFY
YNGNMVEVLTPYVQRHFKRVTELNKDLAFLEFIVKCMASFLDH
BO09538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1671-PA | 787 | CG1671-PA | 1..787 | 1..787 | 4122 | 100 | Plus |
| slmb-PB | 597 | CG3412-PB | 233..522 | 363..667 | 250 | 27.6 | Plus |
| ago-PA | 1326 | CG15010-PA | 988..1265 | 331..634 | 250 | 24.9 | Plus |
| ago-PB | 1326 | CG15010-PB | 988..1265 | 331..634 | 250 | 24.9 | Plus |
| ago-PC | 1326 | CG15010-PC | 988..1265 | 331..634 | 250 | 24.9 | Plus |
