Clone Sequence Records
BO09541.3prime Sequence
892 bp (803 high quality bases) assembled on 2006-01-23
> BO09541.3prime
ATGGTCTAGAAAGCTTGCCTCAATCTGACGGCTGGCCTCCTGCAGGCGCG
CCACCACGCCCTGGTAAAACTTAATCTGTTCGGCAATGAAATTCTTAAGC
GTATGCTTCAAATGCGTATCCCGCTCGCTCTTGAAGTGGGTCAGCTCGGC
CAGCACCGTGTAGGAGACGACATCTGTGCGCCGGTTAACGTCGTGCAACT
GGGGATTATTCATCCTGCCCTCGCCGGCCAATTTCTCGCAGTCCTTTCGC
TTCTGTATGGCACCCTTGTGCGTGGAGAAGATGTCCGGAAAGCAGTTGAG
AACGCCCCTGTAGATGTGAAGTCGATCCGAGAGGGGAATCCAATCATGCT
TTGGCTGGTCGCCAAAGGCCTGTCCAATACCGATAAAGATGCCACCGATG
CGGCCGACGCTCTCGGAGAGCGGAACCGCGTTTCGGGTGGGCGCACGCCG
CTCATCGATGGCCAATGCCTTGGCCAGGTCGGAGAGTCCGTCGCCAATGC
GCTGGAACTCCTTTTTACTCTGCGACATGGAGCGCTTGGCCATGTCGTTG
GATATATTGTTCAGGTTGCGTACTGCCACGTCCATGCTGTGTATGAACTG
GGTGCCCAGCTCCACCTGTGCGTCCACCTTAGAGTGCAGCAGGTTCTTGT
CCGGCGGCGAGATGGCCAGGCAGTAGTTGACGCCCATGTAGGGATCCCGT
TCCGCCTTGCGTTTGCCCGACTTCCAGATCTTCTCGTCGCGGCAAGTGAG
GAAATGGTACCAGACCTCGCATTTGGAGATCACCGGATGGCGGCACACCC
AGTCGACGAACTCCTGCAGCTGCACACGTCGATGCTCCACGAATTGCTCC
TCATAGCGGCCGGAGATCTGCTTGTCCGGCAGCGGTGGCACC
BO09541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6757-PA | 1698 | SH3PX1-RA | 822..1695 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SH3PX1-RA | 2146 | CG6757-RA | 964..1837 | 892..19 | 4370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9711499..9712084 | 307..892 | 2930 | 100 | Plus |
| 3L | 28110227 | 3L | 9710731..9711021 | 19..309 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:45 has no hits.
BO09541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:37 Download gff for
BO09541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6757-PA | 822..1698 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:38 Download gff for
BO09541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6757-PA | 822..1698 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:39 Download gff for
BO09541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 964..1843 | 11..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:19 Download gff for
BO09541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 964..1843 | 11..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:19 Download gff for
BO09541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9710732..9711019 | 20..307 | 100 | <- | Plus |
| 3L | 9711500..9712084 | 308..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:39 Download gff for
BO09541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9703832..9704119 | 20..307 | 100 | <- | Plus |
| arm_3L | 9704600..9705184 | 308..892 | 100 | | Plus |
BO09541.5prime Sequence
880 bp (780 high quality bases) assembled on 2006-01-23
> BO09541.5prime
GAAGTTATCAGTCGACATGACCTCGTACGTGCGTGCCATGTACGACTTTA
CCGGGGAGCCGGGCTCCTCGGAGCTCTCCATCGCGACTGGCGACGTGCTC
TCGGTGACCCGGAGCGATGTGGGTGAAGGCTGGTGGGAGGGCAAGAATGC
CCGTGGCCAGATTGGCCTCTTCCCGGCTGCGTACGTGGAGGTGATGTCGG
CGGCCGAAGCCCAGAAGCTGAGCGCCAGTGGAGCGACGTCGGTGCCACAG
GTTCCGGATCCCTTCGCCTCGCCCCCTTTGCCGCGTTACGATCAGACGGC
GGATGATGATGGCAGCAACTGGGATGATGAGGACGATTGGAGCGACGACA
ATGACACGTACTCGGAAATTGGTCCAGGTGGCCAGAAGTCTGCGGGACAG
TCGGCTCGCGCTGGCGGATTGTCGCATTCCACCAGTGACTACGATAACAA
ACACCTGCCCATCGCGCCCAACGATGATACCCAATCACTGGCCTCCGTGG
CTGGTGGGACTGGTGCTGCTGGCACCGTCAAAAAGGGCATGTTCGCCAAA
AGTTCCGATTCATATATACTCGGCTTGTCCAGCACCAAGGAGAAGATACC
CGAATGCGAGATGGCCTACATTACACAGGTGGAGGACTCGATCTACCAGT
GGACGCAGAACCATTCGCCCTACTCCGTTGTGGTGGCCAGTCCCAAAAAG
GAGTCCAAATTCAAGGGGATGAAGACGTTCATTGCCTACCAACTGACGCC
TAGCTTCAACAACATATCCGTGTCACGTCGCTANCAGCACTTCGACTGGC
TGCACGAACGTTTGGTGGACAAGTTTGCCTGATTCCGGTGCCACCGCTGC
CCGGACAGCAGATCTCCGGCCGCTATGAGG
BO09541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6757-PA | 1698 | SH3PX1-RA | 1..810 | 17..826 | 4006 | 99.7 | Plus |
| CG6757-PA | 1698 | SH3PX1-RA | 809..836 | 824..851 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SH3PX1-RA | 2146 | CG6757-RA | 143..1007 | 17..880 | 4229 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9712931..9713685 | 771..17 | 3775 | 100 | Minus |
| 3L | 28110227 | 3L | 9712041..9712152 | 880..770 | 424 | 93.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:41:35 has no hits.
BO09541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:38 Download gff for
BO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6757-PA | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:40 Download gff for
BO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6757-PA | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:15:08 Download gff for
BO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 136..1007 | 9..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:51 Download gff for
BO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 136..1007 | 9..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:51 Download gff for
BO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9712041..9712152 | 770..880 | 95 | <- | Minus |
| 3L | 9712933..9713692 | 9..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:15:08 Download gff for
BO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9705141..9705252 | 770..880 | 95 | <- | Minus |
| arm_3L | 9706033..9706792 | 9..769 | 99 | | Minus |
BO09541.complete Sequence
1729 bp (1729 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631526
> BO09541.complete
GAAGTTATCAGTCGACATGACCTCGTACGTGCGTGCCATGTACGACTTTA
CCGGGGAGCCGGGCTCCTCGGAGCTCTCCATCGCGACTGGCGACGTGCTC
TCGGTGACCCGGAGCGATGTGGGTGAAGGCTGGTGGGAGGGCAAGAATGC
CCGTGGCCAGATTGGCCTCTTCCCGGCTGCGTACGTGGAGGTGATGTCGG
CGGCCGAAGCCCAGAAGCTGAGCGCCAGTGGAGCGACGTCGGTGCCACAG
GTTCCGGATCCCTTCGCCTCGCCCCCTTTGCCGCGTTACGATCAGACGGC
GGATGATGATGGCAGCAACTGGGATGATGAGGACGATTGGAGCGACGACA
ATGACACGTACTCGGAAATTGGTCCAGGTGGCCAGAAGTCTGCGGGACAG
TCGGCTCGCGCTGGCGGATTGTCGCATTCCACCAGTGACTACGATAACAA
ACACCTGCCCATCGCGCCCAACGATGATACCCAATCACTGGCCTCCGTGG
CTGGTGGGACTGGTGCTGCTGGCACCGTCAAAAAGGGCATGTTCGCCAAA
AGTTCCGATTCATATATACTCGGCTTGTCCAGCACCAAGGAGAAGATACC
CGAATGCGAGATGGCCTACATTACACAGGTGGAGGACTCGATCTACCAGT
GGACGCAGAACCATTCGCCCTACTCCGTTGTGGTGGCCAGTCCCAAAAAG
GAGTCCAAATTCAAGGGGATGAAGACGTTCATTGCCTACCAACTGACGCC
TAGCTTCAACAACATATCCGTGTCACGTCGCTACAAGCACTTCGACTGGC
TGCACGAACGTTTGGTGGACAAGTTTTGCCTGATTCCGGTGCCACCGCTG
CCGGACAAGCAGATCTCCGGCCGCTATGAGGAGCAATTCGTGGAGCATCG
ACGTGTGCAGCTGCAGGAGTTCGTCGACTGGGTGTGCCGCCATCCGGTGA
TCTCCAAATGCGAGGTCTGGTACCATTTCCTCACTTGCCGCGACGAGAAG
ATCTGGAAGTCGGGCAAACGCAAGGCGGAACGGGATCCCTACATGGGCGT
CAACTACTGCCTGGCCATCTCGCCGCCGGACAAGAACCTGCTGCACTCTA
AGGTGGACGCACAGGTGGAGCTGGGCACCCAGTTCATACACAGCATGGAC
GTGGCAGTACGCAACCTGAACAATATATCCAACGACATGGCCAAGCGCTC
CATGTCGCAGAGTAAAAAGGAGTTCCAGCGCATTGGCGACGGACTCTCCG
ACCTGGCCAAGGCATTGGCCATCGATGAGCGGCGTGCGCCCACCCGAAAC
GCGGTTCCGCTCTCCGAGAGCGTCGGCCGCATCGGTGGCATCTTTATCGG
TATTGGACAGGCCTTTGGCGACCAGCCAAAGCATGATTGGATTCCCCTCT
CGGATCGACTTCACATCTACAGGGGCGTTCTCAACTGCTTTCCGGACATC
TTCTCCACGCACAAGGGTGCCATACAGAAGCGAAAGGACTGCGAGAAATT
GGCCGGCGAGGGCAGGATGAATAATCCCCAGTTGCACGACGTTAACCGGC
GCACAGATGTCGTCTCCTACACGGTGCTGGCCGAGCTGACCCACTTCAAG
AGCGAGCGGGATACGCATTTGAAGCATACGCTTAAGAATTTCATTGCCGA
ACAGATTAAGTTTTACCAGGGCGTGGTGGCGCGCCTGCAGGAGGCCAGCC
GTCAGATTGAGGCAAGCTTTCTAGACCAT
BO09541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SH3PX1-RA | 1698 | CG6757-PA | 1..1695 | 17..1711 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SH3PX1-RA | 2146 | CG6757-RA | 143..1837 | 17..1711 | 8475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9712931..9713685 | 771..17 | 3775 | 100 | Minus |
| 3L | 28110227 | 3L | 9711499..9712152 | 1423..770 | 3270 | 100 | Minus |
| 3L | 28110227 | 3L | 9710731..9711021 | 1711..1421 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:49:22 has no hits.
BO09541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:08 Download gff for
BO09541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 1..1698 | 17..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:03 Download gff for
BO09541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 132..1839 | 9..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:01 Download gff for
BO09541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 143..1837 | 17..1713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:09 Download gff for
BO09541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 132..1839 | 9..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:03 Download gff for
BO09541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SH3PX1-RA | 143..1837 | 17..1713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:03 Download gff for
BO09541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9710729..9711019 | 1423..1713 | 99 | <- | Minus |
| 3L | 9711500..9712152 | 770..1422 | 100 | <- | Minus |
| 3L | 9712933..9713685 | 17..769 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:01 Download gff for
BO09541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9703829..9704119 | 1423..1713 | 99 | <- | Minus |
| arm_3L | 9704600..9705252 | 770..1422 | 100 | <- | Minus |
| arm_3L | 9706033..9706785 | 17..769 | 100 | | Minus |
BO09541.pep Sequence
Translation from 16 to 1729
> BO09541.pep
MTSYVRAMYDFTGEPGSSELSIATGDVLSVTRSDVGEGWWEGKNARGQIG
LFPAAYVEVMSAAEAQKLSASGATSVPQVPDPFASPPLPRYDQTADDDGS
NWDDEDDWSDDNDTYSEIGPGGQKSAGQSARAGGLSHSTSDYDNKHLPIA
PNDDTQSLASVAGGTGAAGTVKKGMFAKSSDSYILGLSSTKEKIPECEMA
YITQVEDSIYQWTQNHSPYSVVVASPKKESKFKGMKTFIAYQLTPSFNNI
SVSRRYKHFDWLHERLVDKFCLIPVPPLPDKQISGRYEEQFVEHRRVQLQ
EFVDWVCRHPVISKCEVWYHFLTCRDEKIWKSGKRKAERDPYMGVNYCLA
ISPPDKNLLHSKVDAQVELGTQFIHSMDVAVRNLNNISNDMAKRSMSQSK
KEFQRIGDGLSDLAKALAIDERRAPTRNAVPLSESVGRIGGIFIGIGQAF
GDQPKHDWIPLSDRLHIYRGVLNCFPDIFSTHKGAIQKRKDCEKLAGEGR
MNNPQLHDVNRRTDVVSYTVLAELTHFKSERDTHLKHTLKNFIAEQIKFY
QGVVARLQEASRQIEASFLDH
BO09541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SH3PX1-PA | 565 | CG6757-PA | 1..565 | 1..565 | 2991 | 100 | Plus |
