Clone Sequence Records
BO09542.3prime Sequence
518 bp (517 high quality bases) assembled on 2006-01-23
> BO09542.3prime
ATGGTCTAGAAAGCTTGCGATGTCGCTCTCGCGCTTCTGCAACTCCACGT
ATTCCTCGCGCTGGCGCTGCTGGTGCAAAGTGCGACCCTCTGGACGTGGT
GGACGCTGGTGCTGCTGCTGGTGATGATGATGGTGCGCCGAGTGCACGGG
CTCCAAGTCGTCAACGCCGATGACAACGTCGTCGGGGAACACTTGCTGAT
GGGTTGTGGGATGGAAGCGCTGAAAGTATGAGGCGTCCTTCAGCTCAGTG
AAATCCAATGGCGGCTGATTGTGGGGCGTGGCAGACCAAATGGAAACCAA
CCAGCGATTGCCCGTGTGCCTGTCCTGCCAGTACTTGCGATGCTTGGAGC
AGCAGCCCAAGATAATGTTCAGTATTATGATCGTGCCCAGGACAACCGTG
CAGATGGCAATGGTCACATAAAACGGCGAGAAGTTGCCGTAGATGTGGCC
GGTGAAGTAGGGATTCTTTTCGTACGCCTTGCGTTCCTCTTCGATTGTGG
ACATGTCGACTGATAACT
BO09542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8600-PA | 489 | CG8600-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43781-RA | 1430 | CG43781-RA | 211..696 | 504..19 | 2430 | 100 | Minus |
CG43780-RA | 1430 | CG43780-RA | 211..696 | 504..19 | 2430 | 100 | Minus |
CG43781-RB | 1415 | CG43781-RB | 211..681 | 504..19 | 2195 | 96.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7334542..7334835 | 211..504 | 1470 | 100 | Plus |
3L | 28110227 | 3L | 7334278..7334469 | 19..210 | 960 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 09:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6901 | 136..15 | 139 | 59.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6865 | 136..14 | 129 | 59.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1578 | 136..99 | 118 | 78.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6875 | 136..19 | 117 | 59.2 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3324 | 152..90 | 117 | 65.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2477..2531 | 141..90 | 114 | 72.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2511 | 143..66 | 113 | 62 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6839 | 134..19 | 112 | 58.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 136..99 | 109 | 76.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2488 | 135..38 | 104 | 59.2 | Minus |
BO09542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:38 Download gff for
BO09542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8600-PA | 1..489 | 15..504 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:41 Download gff for
BO09542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8600-PA | 1..489 | 15..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:53:24 Download gff for
BO09542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43781-RA | 207..700 | 14..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:02:02 Download gff for
BO09542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43780-RA | 207..700 | 14..507 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:02:02 Download gff for
BO09542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7334274..7334469 | 14..210 | 98 | <- | Plus |
3L | 7334542..7334839 | 211..507 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:53:24 Download gff for
BO09542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7327374..7327569 | 14..210 | 98 | <- | Plus |
arm_3L | 7327642..7327939 | 211..507 | 99 | | Plus |
BO09542.5prime Sequence
518 bp (517 high quality bases) assembled on 2006-01-23
> BO09542.5prime
GAAGTTATCAGTCGACATGTCCACAATCGAAGAGGAACGCAAGGCGTACG
AAAAGAATCCCTACTTCACCGGCCACATCTACGGCAACTTCTCGCCGTTT
TATGTGACCATTGCCATCTGCACGGTTGTCCTGGGCACGATCATAATACT
GAACATTATCTTGGGCTGCTGCTCCAAGCATCGCAAGTACTGGCAGGACA
GGCACACGGGCAATCGCTGGTTGGTTTCCATTTGGTCTGCCACGCCCCAC
AATCAGCCGCCATTGGATTTCACTGAGCTGAAGGACGCCTCATACTTTCA
GCGCTTCCATCCCACAACCCATCAGCAAGTGTTCCCCGACGACGTTGTCA
TCGGCGTTGACGACTTGGAGCCCGTGCACTCGGCGCACCATCATCATCAC
CAGCAGCAGCACCAGCGTCCACCACGTCCAGAGGGTCGCACTTTGCACCA
GCAGCGCCAGCGCGAGGAATACGTGGAGTTGCAGAAGCGCGAGAGCGACA
TCGCAAGCTTTCTAGACC
BO09542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8600-PA | 489 | CG8600-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43781-RA | 1430 | CG43781-RA | 211..696 | 17..502 | 2430 | 100 | Plus |
CG43780-RA | 1430 | CG43780-RA | 211..696 | 17..502 | 2430 | 100 | Plus |
CG43781-RB | 1415 | CG43781-RB | 211..681 | 17..502 | 2195 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7334542..7334835 | 310..17 | 1470 | 100 | Minus |
3L | 28110227 | 3L | 7334278..7334469 | 502..311 | 960 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 18:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6901 | 385..506 | 139 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6865 | 385..507 | 129 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1578 | 385..422 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6875 | 385..502 | 117 | 59.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3324 | 369..431 | 117 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2477..2531 | 380..431 | 114 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2511 | 378..455 | 113 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6839 | 387..502 | 112 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 385..422 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2488 | 386..483 | 104 | 59.2 | Plus |
BO09542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:39 Download gff for
BO09542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8600-PA | 1..489 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:43 Download gff for
BO09542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8600-PA | 1..489 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:58 Download gff for
BO09542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43781-RA | 207..700 | 14..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:52 Download gff for
BO09542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43780-RA | 207..700 | 14..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:41:52 Download gff for
BO09542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7334274..7334469 | 311..507 | 98 | <- | Minus |
3L | 7334542..7334839 | 14..310 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:58 Download gff for
BO09542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7327374..7327569 | 311..507 | 98 | <- | Minus |
arm_3L | 7327642..7327939 | 14..310 | 99 | | Minus |
BO09542.complete Sequence
520 bp (520 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631527
> BO09542.complete
GAAGTTATCAGTCGACATGTCCACAATCGAAGAGGAACGCAAGGCGTACG
AAAAGAATCCCTACTTCACCGGCCACATCTACGGCAACTTCTCGCCGTTT
TATGTGACCATTGCCATCTGCACGGTTGTCCTGGGCACGATCATAATACT
GAACATTATCTTGGGCTGCTGCTCCAAGCATCGCAAGTACTGGCAGGACA
GGCACACGGGCAATCGCTGGTTGGTTTCCATTTGGTCTGCCACGCCCCAC
AATCAGCCGCCATTGGATTTCACTGAGCTGAAGGACGCCTCATACTTTCA
GCGCTTCCATCCCACAACCCATCAGCAAGTGTTCCCCGACGACGTTGTCA
TCGGCGTTGACGACTTGGAGCCCGTGCACTCGGCGCACCATCATCATCAC
CAGCAGCAGCACCAGCGTCCACCACGTCCAGAGGGTCGCACTTTGCACCA
GCAGCGCCAGCGCGAGGAATACGTGGAGTTGCAGAAGCGCGAGAGCGACA
TCGCAAGCTTTCTAGACCAT
BO09542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43780-RA | 489 | CG43780-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
CG43780-RB | 474 | CG43780-PB | 1..471 | 17..502 | 2170 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43781-RA | 1430 | CG43781-RA | 211..696 | 17..502 | 2430 | 100 | Plus |
CG43780-RA | 1430 | CG43780-RA | 211..696 | 17..502 | 2430 | 100 | Plus |
CG43781-RB | 1415 | CG43781-RB | 211..681 | 17..502 | 2170 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7334542..7334835 | 310..17 | 1470 | 100 | Minus |
3L | 28110227 | 3L | 7334278..7334469 | 502..311 | 960 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6901 | 385..506 | 139 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6865 | 385..507 | 129 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1578 | 385..422 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6875 | 385..502 | 117 | 59.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3324 | 369..431 | 117 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2477..2531 | 380..431 | 114 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2511 | 378..455 | 113 | 62 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6839 | 387..502 | 112 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 385..422 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2488 | 386..483 | 104 | 59.2 | Plus |
BO09542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:02 Download gff for
BO09542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8600-RA | 1..489 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:49 Download gff for
BO09542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8600-RB | 224..717 | 14..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:39 Download gff for
BO09542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43781-RA | 211..696 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:02 Download gff for
BO09542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8600-RA | 205..698 | 14..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:33 Download gff for
BO09542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43780-RA | 211..696 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:33 Download gff for
BO09542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7334276..7334469 | 311..504 | 98 | <- | Minus |
3L | 7334542..7334835 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:39 Download gff for
BO09542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7327642..7327935 | 17..310 | 100 | | Minus |
arm_3L | 7327376..7327569 | 311..504 | 98 | <- | Minus |
BO09542.pep Sequence
Translation from 16 to 520
> BO09542.pep
MSTIEEERKAYEKNPYFTGHIYGNFSPFYVTIAICTVVLGTIIILNIILG
CCSKHRKYWQDRHTGNRWLVSIWSATPHNQPPLDFTELKDASYFQRFHPT
THQQVFPDDVVIGVDDLEPVHSAHHHHHQQQHQRPPRPEGRTLHQQRQRE
EYVELQKRESDIASFLDH
BO09542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43780-PA | 162 | CG43780-PA | 1..162 | 1..162 | 901 | 100 | Plus |
CG43780-PB | 157 | CG43780-PB | 1..157 | 1..162 | 855 | 96.9 | Plus |