Clone BO09542 Report

Search the DGRC for BO09542

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG8600-RA
Protein status:BO09542.pep: validated full length
Sequenced Size:520

Clone Sequence Records

BO09542.3prime Sequence

518 bp (517 high quality bases) assembled on 2006-01-23

> BO09542.3prime
ATGGTCTAGAAAGCTTGCGATGTCGCTCTCGCGCTTCTGCAACTCCACGT
ATTCCTCGCGCTGGCGCTGCTGGTGCAAAGTGCGACCCTCTGGACGTGGT
GGACGCTGGTGCTGCTGCTGGTGATGATGATGGTGCGCCGAGTGCACGGG
CTCCAAGTCGTCAACGCCGATGACAACGTCGTCGGGGAACACTTGCTGAT
GGGTTGTGGGATGGAAGCGCTGAAAGTATGAGGCGTCCTTCAGCTCAGTG
AAATCCAATGGCGGCTGATTGTGGGGCGTGGCAGACCAAATGGAAACCAA
CCAGCGATTGCCCGTGTGCCTGTCCTGCCAGTACTTGCGATGCTTGGAGC
AGCAGCCCAAGATAATGTTCAGTATTATGATCGTGCCCAGGACAACCGTG
CAGATGGCAATGGTCACATAAAACGGCGAGAAGTTGCCGTAGATGTGGCC
GGTGAAGTAGGGATTCTTTTCGTACGCCTTGCGTTCCTCTTCGATTGTGG
ACATGTCGACTGATAACT

BO09542.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8600-PA 489 CG8600-RA 1..486 504..19 2430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG43781-RA 1430 CG43781-RA 211..696 504..19 2430 100 Minus
CG43780-RA 1430 CG43780-RA 211..696 504..19 2430 100 Minus
CG43781-RB 1415 CG43781-RB 211..681 504..19 2195 96.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7334542..7334835 211..504 1470 100 Plus
3L 28110227 3L 7334278..7334469 19..210 960 100 Plus
Blast to na_te.dros performed 2015-02-13 09:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6901 136..15 139 59.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6865 136..14 129 59.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1578 136..99 118 78.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6875 136..19 117 59.2 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3262..3324 152..90 117 65.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2477..2531 141..90 114 72.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2511 143..66 113 62 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6839 134..19 112 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 136..99 109 76.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2488 135..38 104 59.2 Minus

BO09542.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:38 Download gff for BO09542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8600-PA 1..489 15..504 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:41 Download gff for BO09542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8600-PA 1..489 15..504 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:53:24 Download gff for BO09542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43781-RA 207..700 14..507 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:02:02 Download gff for BO09542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43780-RA 207..700 14..507 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:02:02 Download gff for BO09542.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7334274..7334469 14..210 98 <- Plus
3L 7334542..7334839 211..507 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:53:24 Download gff for BO09542.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7327374..7327569 14..210 98 <- Plus
arm_3L 7327642..7327939 211..507 99   Plus

BO09542.5prime Sequence

518 bp (517 high quality bases) assembled on 2006-01-23

> BO09542.5prime
GAAGTTATCAGTCGACATGTCCACAATCGAAGAGGAACGCAAGGCGTACG
AAAAGAATCCCTACTTCACCGGCCACATCTACGGCAACTTCTCGCCGTTT
TATGTGACCATTGCCATCTGCACGGTTGTCCTGGGCACGATCATAATACT
GAACATTATCTTGGGCTGCTGCTCCAAGCATCGCAAGTACTGGCAGGACA
GGCACACGGGCAATCGCTGGTTGGTTTCCATTTGGTCTGCCACGCCCCAC
AATCAGCCGCCATTGGATTTCACTGAGCTGAAGGACGCCTCATACTTTCA
GCGCTTCCATCCCACAACCCATCAGCAAGTGTTCCCCGACGACGTTGTCA
TCGGCGTTGACGACTTGGAGCCCGTGCACTCGGCGCACCATCATCATCAC
CAGCAGCAGCACCAGCGTCCACCACGTCCAGAGGGTCGCACTTTGCACCA
GCAGCGCCAGCGCGAGGAATACGTGGAGTTGCAGAAGCGCGAGAGCGACA
TCGCAAGCTTTCTAGACC

BO09542.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8600-PA 489 CG8600-RA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG43781-RA 1430 CG43781-RA 211..696 17..502 2430 100 Plus
CG43780-RA 1430 CG43780-RA 211..696 17..502 2430 100 Plus
CG43781-RB 1415 CG43781-RB 211..681 17..502 2195 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7334542..7334835 310..17 1470 100 Minus
3L 28110227 3L 7334278..7334469 502..311 960 100 Minus
Blast to na_te.dros performed 2015-02-11 18:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6901 385..506 139 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6865 385..507 129 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1578 385..422 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6875 385..502 117 59.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3262..3324 369..431 117 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2477..2531 380..431 114 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2511 378..455 113 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6839 387..502 112 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 385..422 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2488 386..483 104 59.2 Plus

BO09542.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:39 Download gff for BO09542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8600-PA 1..489 17..506 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:43 Download gff for BO09542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8600-PA 1..489 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:58 Download gff for BO09542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43781-RA 207..700 14..507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:41:52 Download gff for BO09542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43780-RA 207..700 14..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:41:52 Download gff for BO09542.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7334274..7334469 311..507 98 <- Minus
3L 7334542..7334839 14..310 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:58 Download gff for BO09542.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7327374..7327569 311..507 98 <- Minus
arm_3L 7327642..7327939 14..310 99   Minus

BO09542.complete Sequence

520 bp (520 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631527

> BO09542.complete
GAAGTTATCAGTCGACATGTCCACAATCGAAGAGGAACGCAAGGCGTACG
AAAAGAATCCCTACTTCACCGGCCACATCTACGGCAACTTCTCGCCGTTT
TATGTGACCATTGCCATCTGCACGGTTGTCCTGGGCACGATCATAATACT
GAACATTATCTTGGGCTGCTGCTCCAAGCATCGCAAGTACTGGCAGGACA
GGCACACGGGCAATCGCTGGTTGGTTTCCATTTGGTCTGCCACGCCCCAC
AATCAGCCGCCATTGGATTTCACTGAGCTGAAGGACGCCTCATACTTTCA
GCGCTTCCATCCCACAACCCATCAGCAAGTGTTCCCCGACGACGTTGTCA
TCGGCGTTGACGACTTGGAGCCCGTGCACTCGGCGCACCATCATCATCAC
CAGCAGCAGCACCAGCGTCCACCACGTCCAGAGGGTCGCACTTTGCACCA
GCAGCGCCAGCGCGAGGAATACGTGGAGTTGCAGAAGCGCGAGAGCGACA
TCGCAAGCTTTCTAGACCAT

BO09542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG43780-RA 489 CG43780-PA 1..486 17..502 2430 100 Plus
CG43780-RB 474 CG43780-PB 1..471 17..502 2170 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG43781-RA 1430 CG43781-RA 211..696 17..502 2430 100 Plus
CG43780-RA 1430 CG43780-RA 211..696 17..502 2430 100 Plus
CG43781-RB 1415 CG43781-RB 211..681 17..502 2170 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7334542..7334835 310..17 1470 100 Minus
3L 28110227 3L 7334278..7334469 502..311 960 100 Minus
Blast to na_te.dros performed 2014-11-26 22:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6901 385..506 139 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6865 385..507 129 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1578 385..422 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6875 385..502 117 59.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3262..3324 369..431 117 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2477..2531 380..431 114 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2511 378..455 113 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6839 387..502 112 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2330..2367 385..422 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2488 386..483 104 59.2 Plus

BO09542.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:14:02 Download gff for BO09542.complete
Subject Subject Range Query Range Percent Splice Strand
CG8600-RA 1..489 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:49 Download gff for BO09542.complete
Subject Subject Range Query Range Percent Splice Strand
CG8600-RB 224..717 14..507 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:39 Download gff for BO09542.complete
Subject Subject Range Query Range Percent Splice Strand
CG43781-RA 211..696 17..504 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:14:02 Download gff for BO09542.complete
Subject Subject Range Query Range Percent Splice Strand
CG8600-RA 205..698 14..507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:33 Download gff for BO09542.complete
Subject Subject Range Query Range Percent Splice Strand
CG43780-RA 211..696 17..504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:33 Download gff for BO09542.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7334276..7334469 311..504 98 <- Minus
3L 7334542..7334835 17..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:39 Download gff for BO09542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7327642..7327935 17..310 100   Minus
arm_3L 7327376..7327569 311..504 98 <- Minus

BO09542.pep Sequence

Translation from 16 to 520

> BO09542.pep
MSTIEEERKAYEKNPYFTGHIYGNFSPFYVTIAICTVVLGTIIILNIILG
CCSKHRKYWQDRHTGNRWLVSIWSATPHNQPPLDFTELKDASYFQRFHPT
THQQVFPDDVVIGVDDLEPVHSAHHHHHQQQHQRPPRPEGRTLHQQRQRE
EYVELQKRESDIASFLDH

BO09542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG43780-PA 162 CG43780-PA 1..162 1..162 901 100 Plus
CG43780-PB 157 CG43780-PB 1..157 1..162 855 96.9 Plus