Clone BO09544 Report

Search the DGRC for BO09544

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG32486-RD
Protein status:BO09544.pep: validated full length
Sequenced Size:1270

Clone Sequence Records

BO09544.3prime Sequence

827 bp (826 high quality bases) assembled on 2006-01-23

> BO09544.3prime
ATGGTCTAGAAAGCTTGCCTTGTTCAGCAGAAACATGAGCAGGCGGAAGT
TAATGCCTTTGTTGGCCAGCATACGGTTGCATTCGCTGGAGCCGCTACCG
CCGACTCCATCTGGCAATGGCAAGACATAGTACTCGCTTTCGGTACTCGT
CTCGGTGAATTCATGTTTGTATATCTGCGTGGAAACTTTCATATCCGAGA
ACGGACCCTTCAGCGCAAAGAAATGTATGCTCATGGGCGTGCTGGTCTTG
GTCTTGAGGATCAGCTGATAGGTGATGGTCCGCTCGTTGGACTGATGCGG
ATCGCGCTGGCTGTTGTTGATGCGCGCCTTCACCACCCACTGTTGATTGA
AGGCCGAGAAGCGGGCCGTCTCATAAAAGAGCTTGTGCACGTACTCGTCT
GTGCGGTAGGGTTTCATTTGGAGGTCATTGAATATGATCTTCTCGTAGCT
AAGCAAGTCAATCAGGGTGTTAAACATCTTCTTCTCCTCCTTGATCCTAT
CGTCGTGGGCCTCCAGGGCTGCCATTACCTCGTAGCCAGACTTCTGGGGA
TGCAAGCAGTTGCGCTCATGCTCGTTGGTCTCGTGGTAGGGTCCCCGCCA
CTGACAGCCAATGCGATGGTATTTGCACTTGGTCGGGCGCTCCTGGCACT
CGTGTTGTTCATGGCGTTCGAGAGATTTGTATGGGAACTCCTTGTTGCAG
AATTGACACTCGCTGGGCAATTCTGAGGCGGCCTTCTCCACGGCCAAGTT
GCGCGACGCAGTGCTCTTAGAAATTTCCACGCGGCAATTGGGGCACGTGG
CAATCTGATCGCGCAAGCGTCCATCCG

BO09544.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-PD 1239 CG32486-RD 428..1236 827..19 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-RD 2356 CG32486-RD 728..1536 827..19 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3056993..3057271 148..426 1395 100 Plus
3L 28110227 3L 3057430..3057582 426..578 765 100 Plus
3L 28110227 3L 3057641..3057764 579..702 620 100 Plus
3L 28110227 3L 3057829..3057944 703..818 580 100 Plus
3L 28110227 3L 3056819..3056923 44..148 525 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:49:04 has no hits.

BO09544.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:42 Download gff for BO09544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32486-PD 428..1239 18..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:47 Download gff for BO09544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32486-PD 428..1239 18..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:26 Download gff for BO09544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 728..1547 9..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:58 Download gff for BO09544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 728..1547 9..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:58 Download gff for BO09544.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3056819..3056922 44..147 100 <- Plus
3L 3056993..3057270 148..425 100 <- Plus
3L 3057430..3057582 426..578 100 <- Plus
3L 3057641..3057764 579..702 100 <- Plus
3L 3057829..3057944 703..818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:26 Download gff for BO09544.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3056819..3056922 44..147 100 <- Plus
arm_3L 3056993..3057270 148..425 100 <- Plus
arm_3L 3057430..3057582 426..578 100 <- Plus
arm_3L 3057641..3057764 579..702 100 <- Plus
arm_3L 3057829..3057944 703..818 100   Plus

BO09544.5prime Sequence

917 bp (824 high quality bases) assembled on 2006-01-23

> BO09544.5prime
GAAGTTATCAGTCGACATGTCGGTGGAATCCTCCAGTTCGGCGGTCCAAC
AGCCGCCGTCGTCCTCGAACCTACCGCTCCTGGGCGACAACCAGGCGGTG
GCCACGACCAGCTCCGCCTCCTCGGCCTCTTCCTCTTCCACATCGTCGTC
CTCCTCGTCGGTGGGCGGCGGCAATGTGGTGGGCGTGCCGCTGGACACGC
AGGGCAGCGGAGAACCGCCGGCCAAGAAACAGTTGTTGGACGGAGGGGGC
GGTGGTGCCACCAGCAGCAGCGGCAGCAGCTTGCTTTCCAGTGCCGCAGC
CGCCTCGGGAATGCACGAAAAGCTGGCCCACCGCATCTCCAATGCCCTGT
GCTGTGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGTGCCAG
ATGGGCCATCTGATGTGCGCCGCCTGTTTCACGCATCTGCTGGCGGATGG
ACGCTTGCGCGATCAGATTGCCACGTGCCCCAATTGCCGCGTGGAAATTT
CTAAGAGCACTGCGTCGCGCAACTTGGCCGTGGAGAAGGCCGCCTCAGAA
TTGCCCAGCGAGTGTCAATTCTGCAACAAGGAGTTCCCATACAAATCTCT
CGAACGCCATGAACAACACGAGTGCCAGGAGCGCCCGACCAAGTGCAAAT
ACCATCGCATTGGCTGTCAGTGGCGGGGACCCTACCACGAGACCAACGAG
CATGAGCGCAACTGCTTGCATCCCCAGAAGTCTGGCTACGAGGTAATGGC
AGCCCTGGAGGCCCACGACGATAGGATCAAGGAGGAGAAGAAGATGTTTA
ACACCCTGATTGACTTGCTTAGCTACGAGAAGATCATATTCAATGACCTC
CAAATGAAACCCTACCGCACAGACGAGTACGTGCACAAGCTCTTTTATGA
GACGGCCCGCTTTCTCG

BO09544.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-PD 1239 CG32486-RD 1..896 17..912 4480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-RD 2356 CG32486-RD 300..1196 16..912 4485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3070162..3070540 394..16 1895 100 Minus
3L 28110227 3L 3057430..3057582 845..693 765 100 Minus
3L 28110227 3L 3057641..3057764 692..569 620 100 Minus
3L 28110227 3L 3057829..3057944 568..453 580 100 Minus
3L 28110227 3L 3057204..3057271 912..845 340 100 Minus
3L 28110227 3L 3058066..3058127 453..392 310 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:36:38 has no hits.

BO09544.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:44 Download gff for BO09544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32486-PD 1..900 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:48 Download gff for BO09544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32486-PD 1..900 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:25:52 Download gff for BO09544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 296..1200 9..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:22 Download gff for BO09544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 296..1200 9..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:22 Download gff for BO09544.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3057430..3057582 693..845 100 <- Minus
3L 3057641..3057764 569..692 100 <- Minus
3L 3057829..3057943 454..568 100 <- Minus
3L 3058066..3058124 395..453 100 <- Minus
3L 3057200..3057270 846..917 98 <- Minus
3L 3070162..3070544 9..394 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:25:52 Download gff for BO09544.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3057200..3057270 846..917 98 <- Minus
arm_3L 3057430..3057582 693..845 100 <- Minus
arm_3L 3057641..3057764 569..692 100 <- Minus
arm_3L 3057829..3057943 454..568 100 <- Minus
arm_3L 3058066..3058124 395..453 100 <- Minus
arm_3L 3070162..3070544 9..394 98   Minus

BO09544.complete Sequence

1270 bp (1270 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631528

> BO09544.complete
GAAGTTATCAGTCGACATGTCGGTGGAATCCTCCAGTTCGGCGGTCCAAC
AGCCGCCGTCGTCCTCGAACCTACCGCTCCTGGGCGACAACCAGGCGGTG
GCCACGACCAGCTCCGCCTCCTCGGCCTCTTCCTCTTCCACATCGTCGTC
CTCCTCGTCGGTGGGCGGCGGCAATGTGGTGGGCGTGCCGCTGGACACGC
AGGGCAGCGGAGAACCGCCGGCCAAGAAACAGTTGTTGGACGGAGGGGGC
GGTGGTGCCACCAGCAGCAGCGGCAGCAGCTTGCTTTCCAGTGCCGCAGC
CGCCTCGGGAATGCACGAAAAGCTGGCCCACCGCATCTCCAATGCCCTGT
GCTGTGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGTGCCAG
ATGGGCCATCTGATGTGCGCCGCCTGTTTCACGCATCTGCTGGCGGATGG
ACGCTTGCGCGATCAGATTGCCACGTGCCCCAATTGCCGCGTGGAAATTT
CTAAGAGCACTGCGTCGCGCAACTTGGCCGTGGAGAAGGCCGCCTCAGAA
TTGCCCAGCGAGTGTCAATTCTGCAACAAGGAGTTCCCATACAAATCTCT
CGAACGCCATGAACAACACGAGTGCCAGGAGCGCCCGACCAAGTGCAAAT
ACCATCGCATTGGCTGTCAGTGGCGGGGACCCTACCACGAGACCAACGAG
CATGAGCGCAACTGCTTGCATCCCCAGAAGTCTGGCTACGAGGTAATGGC
AGCCCTGGAGGCCCACGACGATAGGATCAAGGAGGAGAAGAAGATGTTTA
ACACCCTGATTGACTTGCTTAGCTACGAGAAGATCATATTCAATGACCTC
CAAATGAAACCCTACCGCACAGACGAGTACGTGCACAAGCTCTTTTATGA
GACGGCCCGCTTCTCGGCCTTCAATCAACAGTGGGTGGTGAAGGCGCGCA
TCAACAACAGCCAGCGCGATCCGCATCAGTCCAACGAGCGGACCATCACC
TATCAGCTGATCCTCAAGACCAAGACCAGCACGCCCATGAGCATACATTT
CTTTGCGCTGAAGGGTCCGTTCTCGGATATGAAAGTTTCCACGCAGATAT
ACAAACATGAATTCACCGAGACGAGTACCGAAAGCGAGTACTATGTCTTG
CCATTGCCAGATGGAGTCGGCGGTAGCGGCTCCAGCGAATGCAACCGTAT
GCTGGCCAACAAAGGCATTAACTTCCGCCTGCTCATGTTTCTGCTGAACA
AGGCAAGCTTTCTAGACCAT

BO09544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-RD 1239 CG32486-PD 1..1236 17..1252 6180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-RD 2356 CG32486-RD 300..1536 16..1252 6185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3070162..3070540 394..16 1895 100 Minus
3L 28110227 3L 3056993..3057271 1123..845 1395 100 Minus
3L 28110227 3L 3057430..3057582 845..693 765 100 Minus
3L 28110227 3L 3057641..3057764 692..569 620 100 Minus
3L 28110227 3L 3057829..3057944 568..453 580 100 Minus
3L 28110227 3L 3056819..3056923 1227..1123 525 100 Minus
3L 28110227 3L 3058066..3058127 453..392 310 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:32:37 has no hits.

BO09544.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:05 Download gff for BO09544.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 1..1239 17..1253 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:34 Download gff for BO09544.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 301..1536 17..1254 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:14 Download gff for BO09544.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 301..1536 17..1254 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:05 Download gff for BO09544.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 296..1547 9..1262 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:13 Download gff for BO09544.complete
Subject Subject Range Query Range Percent Splice Strand
CG32486-RD 301..1536 17..1254 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:13 Download gff for BO09544.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3070162..3070539 17..394 100   Minus
3L 3056726..3056752 1228..1254 92 <- Minus
3L 3056819..3056922 1124..1227 100 <- Minus
3L 3056993..3057270 846..1123 100 <- Minus
3L 3057430..3057582 693..845 100 <- Minus
3L 3057641..3057764 569..692 100 <- Minus
3L 3057829..3057943 454..568 100 <- Minus
3L 3058066..3058124 395..453 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:14 Download gff for BO09544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3056726..3056752 1228..1254 92 <- Minus
arm_3L 3056819..3056922 1124..1227 100 <- Minus
arm_3L 3056993..3057270 846..1123 100 <- Minus
arm_3L 3057430..3057582 693..845 100 <- Minus
arm_3L 3057641..3057764 569..692 100 <- Minus
arm_3L 3057829..3057943 454..568 100 <- Minus
arm_3L 3058066..3058124 395..453 100 <- Minus
arm_3L 3070162..3070539 17..394 100   Minus

BO09544.pep Sequence

Translation from 16 to 1270

> BO09544.pep
MSVESSSSAVQQPPSSSNLPLLGDNQAVATTSSASSASSSSTSSSSSSVG
GGNVVGVPLDTQGSGEPPAKKQLLDGGGGGATSSSGSSLLSSAAAASGMH
EKLAHRISNALCCAVCLDLPKTAMYQCQMGHLMCAACFTHLLADGRLRDQ
IATCPNCRVEISKSTASRNLAVEKAASELPSECQFCNKEFPYKSLERHEQ
HECQERPTKCKYHRIGCQWRGPYHETNEHERNCLHPQKSGYEVMAALEAH
DDRIKEEKKMFNTLIDLLSYEKIIFNDLQMKPYRTDEYVHKLFYETARFS
AFNQQWVVKARINNSQRDPHQSNERTITYQLILKTKTSTPMSIHFFALKG
PFSDMKVSTQIYKHEFTETSTESEYYVLPLPDGVGGSGSSECNRMLANKG
INFRLLMFLLNKASFLDH

BO09544.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32486-PD 412 CG32486-PD 1..412 1..412 2163 100 Plus
sina-PC 314 CG9949-PC 15..179 27..229 193 28 Plus
sina-PB 314 CG9949-PB 15..179 27..229 193 28 Plus
sina-PA 314 CG9949-PA 15..179 27..229 193 28 Plus
sinah-PC 351 CG13030-PC 106..227 113..251 172 30.8 Plus