Clone Sequence Records
BO09544.3prime Sequence
827 bp (826 high quality bases) assembled on 2006-01-23
> BO09544.3prime
ATGGTCTAGAAAGCTTGCCTTGTTCAGCAGAAACATGAGCAGGCGGAAGT
TAATGCCTTTGTTGGCCAGCATACGGTTGCATTCGCTGGAGCCGCTACCG
CCGACTCCATCTGGCAATGGCAAGACATAGTACTCGCTTTCGGTACTCGT
CTCGGTGAATTCATGTTTGTATATCTGCGTGGAAACTTTCATATCCGAGA
ACGGACCCTTCAGCGCAAAGAAATGTATGCTCATGGGCGTGCTGGTCTTG
GTCTTGAGGATCAGCTGATAGGTGATGGTCCGCTCGTTGGACTGATGCGG
ATCGCGCTGGCTGTTGTTGATGCGCGCCTTCACCACCCACTGTTGATTGA
AGGCCGAGAAGCGGGCCGTCTCATAAAAGAGCTTGTGCACGTACTCGTCT
GTGCGGTAGGGTTTCATTTGGAGGTCATTGAATATGATCTTCTCGTAGCT
AAGCAAGTCAATCAGGGTGTTAAACATCTTCTTCTCCTCCTTGATCCTAT
CGTCGTGGGCCTCCAGGGCTGCCATTACCTCGTAGCCAGACTTCTGGGGA
TGCAAGCAGTTGCGCTCATGCTCGTTGGTCTCGTGGTAGGGTCCCCGCCA
CTGACAGCCAATGCGATGGTATTTGCACTTGGTCGGGCGCTCCTGGCACT
CGTGTTGTTCATGGCGTTCGAGAGATTTGTATGGGAACTCCTTGTTGCAG
AATTGACACTCGCTGGGCAATTCTGAGGCGGCCTTCTCCACGGCCAAGTT
GCGCGACGCAGTGCTCTTAGAAATTTCCACGCGGCAATTGGGGCACGTGG
CAATCTGATCGCGCAAGCGTCCATCCG
BO09544.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32486-PD | 1239 | CG32486-RD | 428..1236 | 827..19 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32486-RD | 2356 | CG32486-RD | 728..1536 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3056993..3057271 | 148..426 | 1395 | 100 | Plus |
3L | 28110227 | 3L | 3057430..3057582 | 426..578 | 765 | 100 | Plus |
3L | 28110227 | 3L | 3057641..3057764 | 579..702 | 620 | 100 | Plus |
3L | 28110227 | 3L | 3057829..3057944 | 703..818 | 580 | 100 | Plus |
3L | 28110227 | 3L | 3056819..3056923 | 44..148 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:04 has no hits.
BO09544.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:42 Download gff for
BO09544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-PD | 428..1239 | 18..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:47 Download gff for
BO09544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-PD | 428..1239 | 18..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:26 Download gff for
BO09544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 728..1547 | 9..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:58 Download gff for
BO09544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 728..1547 | 9..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:58 Download gff for
BO09544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3056819..3056922 | 44..147 | 100 | <- | Plus |
3L | 3056993..3057270 | 148..425 | 100 | <- | Plus |
3L | 3057430..3057582 | 426..578 | 100 | <- | Plus |
3L | 3057641..3057764 | 579..702 | 100 | <- | Plus |
3L | 3057829..3057944 | 703..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:26 Download gff for
BO09544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3056819..3056922 | 44..147 | 100 | <- | Plus |
arm_3L | 3056993..3057270 | 148..425 | 100 | <- | Plus |
arm_3L | 3057430..3057582 | 426..578 | 100 | <- | Plus |
arm_3L | 3057641..3057764 | 579..702 | 100 | <- | Plus |
arm_3L | 3057829..3057944 | 703..818 | 100 | | Plus |
BO09544.5prime Sequence
917 bp (824 high quality bases) assembled on 2006-01-23
> BO09544.5prime
GAAGTTATCAGTCGACATGTCGGTGGAATCCTCCAGTTCGGCGGTCCAAC
AGCCGCCGTCGTCCTCGAACCTACCGCTCCTGGGCGACAACCAGGCGGTG
GCCACGACCAGCTCCGCCTCCTCGGCCTCTTCCTCTTCCACATCGTCGTC
CTCCTCGTCGGTGGGCGGCGGCAATGTGGTGGGCGTGCCGCTGGACACGC
AGGGCAGCGGAGAACCGCCGGCCAAGAAACAGTTGTTGGACGGAGGGGGC
GGTGGTGCCACCAGCAGCAGCGGCAGCAGCTTGCTTTCCAGTGCCGCAGC
CGCCTCGGGAATGCACGAAAAGCTGGCCCACCGCATCTCCAATGCCCTGT
GCTGTGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGTGCCAG
ATGGGCCATCTGATGTGCGCCGCCTGTTTCACGCATCTGCTGGCGGATGG
ACGCTTGCGCGATCAGATTGCCACGTGCCCCAATTGCCGCGTGGAAATTT
CTAAGAGCACTGCGTCGCGCAACTTGGCCGTGGAGAAGGCCGCCTCAGAA
TTGCCCAGCGAGTGTCAATTCTGCAACAAGGAGTTCCCATACAAATCTCT
CGAACGCCATGAACAACACGAGTGCCAGGAGCGCCCGACCAAGTGCAAAT
ACCATCGCATTGGCTGTCAGTGGCGGGGACCCTACCACGAGACCAACGAG
CATGAGCGCAACTGCTTGCATCCCCAGAAGTCTGGCTACGAGGTAATGGC
AGCCCTGGAGGCCCACGACGATAGGATCAAGGAGGAGAAGAAGATGTTTA
ACACCCTGATTGACTTGCTTAGCTACGAGAAGATCATATTCAATGACCTC
CAAATGAAACCCTACCGCACAGACGAGTACGTGCACAAGCTCTTTTATGA
GACGGCCCGCTTTCTCG
BO09544.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32486-PD | 1239 | CG32486-RD | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32486-RD | 2356 | CG32486-RD | 300..1196 | 16..912 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3070162..3070540 | 394..16 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 3057430..3057582 | 845..693 | 765 | 100 | Minus |
3L | 28110227 | 3L | 3057641..3057764 | 692..569 | 620 | 100 | Minus |
3L | 28110227 | 3L | 3057829..3057944 | 568..453 | 580 | 100 | Minus |
3L | 28110227 | 3L | 3057204..3057271 | 912..845 | 340 | 100 | Minus |
3L | 28110227 | 3L | 3058066..3058127 | 453..392 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:36:38 has no hits.
BO09544.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:44 Download gff for
BO09544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-PD | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:18:48 Download gff for
BO09544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-PD | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:25:52 Download gff for
BO09544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 296..1200 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:22 Download gff for
BO09544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 296..1200 | 9..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:22 Download gff for
BO09544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3057430..3057582 | 693..845 | 100 | <- | Minus |
3L | 3057641..3057764 | 569..692 | 100 | <- | Minus |
3L | 3057829..3057943 | 454..568 | 100 | <- | Minus |
3L | 3058066..3058124 | 395..453 | 100 | <- | Minus |
3L | 3057200..3057270 | 846..917 | 98 | <- | Minus |
3L | 3070162..3070544 | 9..394 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:25:52 Download gff for
BO09544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3057200..3057270 | 846..917 | 98 | <- | Minus |
arm_3L | 3057430..3057582 | 693..845 | 100 | <- | Minus |
arm_3L | 3057641..3057764 | 569..692 | 100 | <- | Minus |
arm_3L | 3057829..3057943 | 454..568 | 100 | <- | Minus |
arm_3L | 3058066..3058124 | 395..453 | 100 | <- | Minus |
arm_3L | 3070162..3070544 | 9..394 | 98 | | Minus |
BO09544.complete Sequence
1270 bp (1270 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631528
> BO09544.complete
GAAGTTATCAGTCGACATGTCGGTGGAATCCTCCAGTTCGGCGGTCCAAC
AGCCGCCGTCGTCCTCGAACCTACCGCTCCTGGGCGACAACCAGGCGGTG
GCCACGACCAGCTCCGCCTCCTCGGCCTCTTCCTCTTCCACATCGTCGTC
CTCCTCGTCGGTGGGCGGCGGCAATGTGGTGGGCGTGCCGCTGGACACGC
AGGGCAGCGGAGAACCGCCGGCCAAGAAACAGTTGTTGGACGGAGGGGGC
GGTGGTGCCACCAGCAGCAGCGGCAGCAGCTTGCTTTCCAGTGCCGCAGC
CGCCTCGGGAATGCACGAAAAGCTGGCCCACCGCATCTCCAATGCCCTGT
GCTGTGCCGTCTGCCTGGATTTGCCCAAGACGGCCATGTACCAGTGCCAG
ATGGGCCATCTGATGTGCGCCGCCTGTTTCACGCATCTGCTGGCGGATGG
ACGCTTGCGCGATCAGATTGCCACGTGCCCCAATTGCCGCGTGGAAATTT
CTAAGAGCACTGCGTCGCGCAACTTGGCCGTGGAGAAGGCCGCCTCAGAA
TTGCCCAGCGAGTGTCAATTCTGCAACAAGGAGTTCCCATACAAATCTCT
CGAACGCCATGAACAACACGAGTGCCAGGAGCGCCCGACCAAGTGCAAAT
ACCATCGCATTGGCTGTCAGTGGCGGGGACCCTACCACGAGACCAACGAG
CATGAGCGCAACTGCTTGCATCCCCAGAAGTCTGGCTACGAGGTAATGGC
AGCCCTGGAGGCCCACGACGATAGGATCAAGGAGGAGAAGAAGATGTTTA
ACACCCTGATTGACTTGCTTAGCTACGAGAAGATCATATTCAATGACCTC
CAAATGAAACCCTACCGCACAGACGAGTACGTGCACAAGCTCTTTTATGA
GACGGCCCGCTTCTCGGCCTTCAATCAACAGTGGGTGGTGAAGGCGCGCA
TCAACAACAGCCAGCGCGATCCGCATCAGTCCAACGAGCGGACCATCACC
TATCAGCTGATCCTCAAGACCAAGACCAGCACGCCCATGAGCATACATTT
CTTTGCGCTGAAGGGTCCGTTCTCGGATATGAAAGTTTCCACGCAGATAT
ACAAACATGAATTCACCGAGACGAGTACCGAAAGCGAGTACTATGTCTTG
CCATTGCCAGATGGAGTCGGCGGTAGCGGCTCCAGCGAATGCAACCGTAT
GCTGGCCAACAAAGGCATTAACTTCCGCCTGCTCATGTTTCTGCTGAACA
AGGCAAGCTTTCTAGACCAT
BO09544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32486-RD | 1239 | CG32486-PD | 1..1236 | 17..1252 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32486-RD | 2356 | CG32486-RD | 300..1536 | 16..1252 | 6185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3070162..3070540 | 394..16 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 3056993..3057271 | 1123..845 | 1395 | 100 | Minus |
3L | 28110227 | 3L | 3057430..3057582 | 845..693 | 765 | 100 | Minus |
3L | 28110227 | 3L | 3057641..3057764 | 692..569 | 620 | 100 | Minus |
3L | 28110227 | 3L | 3057829..3057944 | 568..453 | 580 | 100 | Minus |
3L | 28110227 | 3L | 3056819..3056923 | 1227..1123 | 525 | 100 | Minus |
3L | 28110227 | 3L | 3058066..3058127 | 453..392 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:32:37 has no hits.
BO09544.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:05 Download gff for
BO09544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 1..1239 | 17..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:34 Download gff for
BO09544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 301..1536 | 17..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:14 Download gff for
BO09544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 301..1536 | 17..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:05 Download gff for
BO09544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 296..1547 | 9..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:13 Download gff for
BO09544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32486-RD | 301..1536 | 17..1254 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:13 Download gff for
BO09544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3070162..3070539 | 17..394 | 100 | | Minus |
3L | 3056726..3056752 | 1228..1254 | 92 | <- | Minus |
3L | 3056819..3056922 | 1124..1227 | 100 | <- | Minus |
3L | 3056993..3057270 | 846..1123 | 100 | <- | Minus |
3L | 3057430..3057582 | 693..845 | 100 | <- | Minus |
3L | 3057641..3057764 | 569..692 | 100 | <- | Minus |
3L | 3057829..3057943 | 454..568 | 100 | <- | Minus |
3L | 3058066..3058124 | 395..453 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:14 Download gff for
BO09544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3056726..3056752 | 1228..1254 | 92 | <- | Minus |
arm_3L | 3056819..3056922 | 1124..1227 | 100 | <- | Minus |
arm_3L | 3056993..3057270 | 846..1123 | 100 | <- | Minus |
arm_3L | 3057430..3057582 | 693..845 | 100 | <- | Minus |
arm_3L | 3057641..3057764 | 569..692 | 100 | <- | Minus |
arm_3L | 3057829..3057943 | 454..568 | 100 | <- | Minus |
arm_3L | 3058066..3058124 | 395..453 | 100 | <- | Minus |
arm_3L | 3070162..3070539 | 17..394 | 100 | | Minus |
BO09544.pep Sequence
Translation from 16 to 1270
> BO09544.pep
MSVESSSSAVQQPPSSSNLPLLGDNQAVATTSSASSASSSSTSSSSSSVG
GGNVVGVPLDTQGSGEPPAKKQLLDGGGGGATSSSGSSLLSSAAAASGMH
EKLAHRISNALCCAVCLDLPKTAMYQCQMGHLMCAACFTHLLADGRLRDQ
IATCPNCRVEISKSTASRNLAVEKAASELPSECQFCNKEFPYKSLERHEQ
HECQERPTKCKYHRIGCQWRGPYHETNEHERNCLHPQKSGYEVMAALEAH
DDRIKEEKKMFNTLIDLLSYEKIIFNDLQMKPYRTDEYVHKLFYETARFS
AFNQQWVVKARINNSQRDPHQSNERTITYQLILKTKTSTPMSIHFFALKG
PFSDMKVSTQIYKHEFTETSTESEYYVLPLPDGVGGSGSSECNRMLANKG
INFRLLMFLLNKASFLDH
BO09544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32486-PD | 412 | CG32486-PD | 1..412 | 1..412 | 2163 | 100 | Plus |
sina-PC | 314 | CG9949-PC | 15..179 | 27..229 | 193 | 28 | Plus |
sina-PB | 314 | CG9949-PB | 15..179 | 27..229 | 193 | 28 | Plus |
sina-PA | 314 | CG9949-PA | 15..179 | 27..229 | 193 | 28 | Plus |
sinah-PC | 351 | CG13030-PC | 106..227 | 113..251 | 172 | 30.8 | Plus |