Clone Sequence Records
BO09552.3prime Sequence
930 bp (827 high quality bases) assembled on 2006-01-23
> BO09552.3prime
ATGGTCTAGAAAGCTTGCATTCTTCTCCATAATTCGTAAAAACTCAGCTT
TTGTGGCCGCTCTGTTTGCTTTTCTATTGCCACTCTGAATAATGTGATCC
ACAATCAAAGCTCCTCCATTCAACTGCTTAAATTTGGCAGGTATACGTTT
CCTCACATACTCCACAACATCCTGGGCCTCTAGTTGGGTTCCTTGTTTCT
TGACCACTGAAGCGGCTGCCTTATCTCCATAAACGGGATCCCAAATGCCA
AAGACACAAGCTTCCACAACATTTGGCATTTCAGCGATGACACTTTCAAT
CTCGCTGGGGTAATACATGATGGTCTGATACTTGAGCATATCCTTCAAGC
GATCGATAATGAACAAATATCCATCCTCGTCCATGTAGCCCAGGTCCCCG
GTGTGAAACCAGTTCTCCGAGTCCTGCATCTTCTTCGTTTCTTCCGGATT
CTTGTAGTAACCAGGCCATTTCTGACCATTATTGAAGCATATCTCGCCCA
CGACATTGGGTCCTTGTGCTTCACCCAGCTCGTTGACTATTTTGATTTGA
ATGCCTCTAACCGGACGACCCACTGAATTGGGTTTCTCATCGAAGTTGAA
GTTTAGGCATCCGGGGCTGTTCAACTCGGTTAGTGTATAACTGAAATTTA
CACATTCGTTGCTTAGACGGCTGCGAATTTTGTTCTGGACTTCCAGTGAG
CAGTTTGATCCGCCGTAAAAGAAATACTTCACGGATGATAGGTCCGCCGC
ATAGAATTCCGGGCAATTGGACAGCATCGCCAATTGCGAGGAACTTACGA
ACACCATCGATATTCGATACTTCTCAATTAGGCCACACAAATTGGCAGGA
TCAAAGTCACAATCTTCAATTATACTAGTCAAGCTAAACACGGCTGCATT
GATGGTCATCGTGATGCCTGATGCCCAATC
BO09552.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-PA | 1638 | CG5568-RA | 724..1635 | 930..19 | 4560 | 100 | Minus |
| CG18586-PA | 1695 | CG18586-RA | 1352..1442 | 359..269 | 205 | 89 | Minus |
| CG18586-PA | 1695 | CG18586-RA | 1117..1146 | 594..565 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-RA | 1911 | CG5568-RA | 821..1732 | 930..19 | 4560 | 100 | Minus |
| CG18586-RC | 2020 | CG18586-RC | 1070..1893 | 879..56 | 1390 | 78.2 | Minus |
| CG18586-RB | 1817 | CG18586-RB | 876..1699 | 879..56 | 1390 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5872428..5873339 | 930..19 | 4560 | 100 | Minus |
| 3L | 28110227 | 3L | 5874516..5875339 | 879..56 | 1375 | 77.8 | Minus |
| 3R | 32079331 | 3R | 19771523..19771837 | 97..411 | 300 | 73 | Plus |
| 3R | 32079331 | 3R | 19775581..19775895 | 97..411 | 300 | 73 | Plus |
| 3R | 32079331 | 3R | 19782634..19782794 | 414..254 | 235 | 76.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:52:58 has no hits.
BO09552.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:58 Download gff for
BO09552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-PA | 724..1638 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:06 Download gff for
BO09552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-PA | 724..1638 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:16:21 Download gff for
BO09552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 821..1738 | 10..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:03 Download gff for
BO09552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 821..1738 | 10..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:03 Download gff for
BO09552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5872428..5873345 | 10..930 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:16:21 Download gff for
BO09552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5865528..5866445 | 10..930 | 99 | | Minus |
BO09552.5prime Sequence
978 bp (825 high quality bases) assembled on 2006-01-23
> BO09552.5prime
GAAGTTATCAGTCGACATGGGTGAATTGCAAGCGGGAAAATCGCCCTTTA
AGACAAGAAACACCTTTGATGAAAACTTAAAGATCTGGAGTGGTGGCGAA
AAACGCAGTTTATTCTCACCAGATTTGTCCATTGGAGAAATTATCTTTCA
ACAAATGGAGCGCAATGCTATGCTCACTGCCCAGATTTCAGTTACAGAAA
ACACTGAGCTGACCTGGAAAGACATCCAGACAAACGCGATGAAGGTGGCA
AGTTATATGCGTAAACTGGGTCTGGAGCAAGGTGACTTTGTGGGAGTCAT
TGGCAGGTTGACCACTCACTTGACTGCTCTGGCCTATGCCTGTTTCTTTA
ATGGAACTCCTTATCATGCCCTACACACCGAATACGAACAATCTGCCATC
GAGAGACTGTTCGGAATAACCAAGCCACGCTTAATCTTCTGTGATGGAGA
TGAGTTTGAGAAAGTTCAAGCAGCCACCAAAGGCCTTCAGGTACAAATAG
TAACCATGCGTAATCACCCGGCAGGAATATTGAGAATTCAGGATATTTTA
ACCACTCCCGTGGAGATGAACTTTCGACCAGTGCGACTGAAAGACGGTAC
TGATCAACTACTGGCCATTCTTAGCTCTTCGGGAACATCCGGCCTTCCAA
AGGCAGTCACCATTAGCAATAGTCACCAGATTATTGGGAGTTTTCTACCC
GTGGATAGCTCGATTATTCAGTATAACCCAAACACTTTGGATTGGGCATC
AGGCATCACGATGACCATCAATGCAGCCGTGTTTAGCTTGACTAGTATAA
TTGAAGATTGTGACTTTGATCCTGCCAATTTGTGTGGCCTAATTGAGAAG
TATCGAATATCGATGGTGTTCGTAAGTTCCTCGCAATTGGCGATGCTGTC
CCAATTGCCGGAATTCTATGCGGCGGGACTATCATCCGTGAAGTATTTCT
TTTACGGCGGATCAAACTGCTCACTGGA
BO09552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-PA | 1638 | CG5568-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
| CG5568-PA | 1638 | CG5568-RA | 892..962 | 908..978 | 305 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-RA | 1911 | CG5568-RA | 98..1059 | 17..978 | 4735 | 99.6 | Plus |
| CG18586-RB | 1817 | CG18586-RB | 152..771 | 67..686 | 505 | 72.9 | Plus |
| CG18586-RC | 2020 | CG18586-RC | 524..965 | 245..686 | 485 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5871820..5872333 | 183..696 | 2570 | 100 | Plus |
| 3L | 28110227 | 3L | 5872385..5872666 | 697..978 | 1320 | 97.9 | Plus |
| 3L | 28110227 | 3L | 5871598..5871765 | 17..184 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 5873918..5874359 | 245..686 | 470 | 73.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:52:06 has no hits.
BO09552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:13:59 Download gff for
BO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-PA | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:07 Download gff for
BO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-PA | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:20:57 Download gff for
BO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 98..1058 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:34:12 Download gff for
BO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 98..1058 | 17..977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:34:12 Download gff for
BO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5871598..5871765 | 17..184 | 100 | -> | Plus |
| 3L | 5871822..5872333 | 185..696 | 100 | -> | Plus |
| 3L | 5872385..5872665 | 697..977 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:20:57 Download gff for
BO09552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5864698..5864865 | 17..184 | 100 | -> | Plus |
| arm_3L | 5864922..5865433 | 185..696 | 100 | -> | Plus |
| arm_3L | 5865485..5865765 | 697..977 | 98 | | Plus |
BO09552.complete Sequence
1669 bp (1669 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631529
> BO09552.complete
GAAGTTATCAGTCGACATGGGTGAATTGCAAGCGGGAAAATCGCCCTTTA
AGACAAGAAACACCTTTGATGAAAACTTAAAGATCTGGAGTGGTGGCGAA
AAACGCAGTTTATTCTCACCAGATTTGTCCATTGGAGAAATTATCTTTCA
ACAAATGGAGCGCAATGCTATGCTCACTGCCCAGATTTCAGTTACAGAAA
ACACTGAGCTGACCTGGAAAGACATCCAGACAAACGCGATGAAGGTGGCA
AGTTATATGCGTAAACTGGGTCTGGAGCAAGGTGACTTTGTGGGAGTCAT
TGGCAGGTTGACCACTCACTTGACTGCTCTGGCCTATGCCTGTTTCTTTA
ATGGAACTCCTTATCATGCCCTACACACCGAATACGAACAATCTGCCATC
GAGAGACTGTTCGGAATAACCAAGCCACGCTTAATCTTCTGTGATGGAGA
TGAGTTTGAGAAAGTTCAAGCAGCCACCAAAGGCCTTCAGGTACAAATAG
TAACCATGCGTAATCACCCGGCAGGAATATTGAGAATTCAGGATATTTTA
ACCACTCCCGTGGAGATGAACTTTCGACCAGTGCGACTGAAAGACGGTAC
TGATCAACTACTGGCCATTCTTAGCTCTTCGGGAACATCCGGCCTTCCAA
AGGCAGTCACCATTAGCAATAGTCACCAGATTATTGGGAGTTTTCTACCC
GTGGATAGCTCGATTATTCAGTATAACCCAAACACTTTGGATTGGGCATC
AGGCATCACGATGACCATCAATGCAGCCGTGTTTAGCTTGACTAGTATAA
TTGAAGATTGTGACTTTGATCCTGCCAATTTGTGTGGCCTAATTGAGAAG
TATCGAATATCGATGGTGTTCGTAAGTTCCTCGCAATTGGCGATGCTGTC
CAATTGCCCGGAATTCTATGCGGCGGACCTATCATCCGTGAAGTATTTCT
TTTACGGCGGATCAAACTGCTCACTGGAAGTCCAGAACAAAATTCGCAGC
CGTCTAAGCAACGAATGTGTAAATTTCAGTTATACACTAACCGAGTTGAA
CAGCCCCGGATGCCTAAACTTCAACTTCGATGAGAAACCCAATTCAGTGG
GTCGTCCGGTTAGAGGCATTCAAATCAAAATAGTCAACGAGCTGGGTGAA
GCACAAGGACCCAATGTCGTGGGCGAGATATGCTTCAATAATGGTCAGAA
ATGGCCTGGTTACTACAAGAATCCGGAAGAAACGAAGAAGATGCAGGACT
CGGAGAACTGGTTTCACACCGGGGACCTGGGCTACATGGACGAGGATGGA
TATTTGTTCATTATCGATCGCTTGAAGGATATGCTCAAGTATCAGACCAT
CATGTATTACCCCAGCGAGATTGAAAGTGTCATCGCTGAAATGCCAAATG
TTGTGGAAGCTTGTGTCTTTGGCATTTGGGATCCCGTTTATGGAGATAAG
GCAGCCGCTTCAGTGGTCAAGAAACAAGGAACCCAACTAGAGGCCCAGGA
TGTTGTGGAGTATGTGAGGAAACGTATACCTGCCAAATTTAAGCAGTTGA
ATGGAGGAGCTTTGATTGTGGATCACATTATTCAGAGTGGCAATAGAAAA
GCAAACAGAGCGGCCACAAAAGCTGAGTTTTTACGAATTATGGAGAAGAA
TGCAAGCTTTCTAGACCAT
BO09552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-RA | 1638 | CG5568-PA | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| CG18586-RB | 1638 | CG18586-PB | 51..1598 | 67..1614 | 1725 | 74.1 | Plus |
| CG18586-RC | 1611 | CG18586-PC | 202..1571 | 245..1614 | 1705 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-RA | 1911 | CG5568-RA | 98..1732 | 17..1651 | 8175 | 100 | Plus |
| CG18586-RB | 1817 | CG18586-RB | 152..1699 | 67..1614 | 1725 | 74.1 | Plus |
| CG18586-RC | 2020 | CG18586-RC | 524..1893 | 245..1614 | 1705 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5872385..5873339 | 697..1651 | 4775 | 100 | Plus |
| 3L | 28110227 | 3L | 5871820..5872333 | 183..696 | 2570 | 100 | Plus |
| 3L | 28110227 | 3L | 5874516..5875339 | 791..1614 | 1375 | 77.8 | Plus |
| 3L | 28110227 | 3L | 5871598..5871765 | 17..184 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 5873918..5874359 | 245..686 | 470 | 73.8 | Plus |
| 3R | 32079331 | 3R | 19771523..19771837 | 1573..1259 | 300 | 73 | Minus |
| 3R | 32079331 | 3R | 19775581..19775895 | 1573..1259 | 300 | 73 | Minus |
| 3R | 32079331 | 3R | 19782634..19782794 | 1256..1416 | 235 | 76.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:57:44 has no hits.
BO09552.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:06 Download gff for
BO09552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 1..1638 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:34 Download gff for
BO09552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 97..1737 | 17..1660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:39 Download gff for
BO09552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 98..1732 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:07 Download gff for
BO09552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 97..1737 | 17..1660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:56 Download gff for
BO09552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 98..1732 | 17..1653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:56 Download gff for
BO09552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5871598..5871765 | 17..184 | 100 | -> | Plus |
| 3L | 5871822..5872333 | 185..696 | 100 | -> | Plus |
| 3L | 5872385..5873339 | 697..1653 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:39 Download gff for
BO09552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5864698..5864865 | 17..184 | 100 | -> | Plus |
| arm_3L | 5864922..5865433 | 185..696 | 100 | -> | Plus |
| arm_3L | 5865485..5866439 | 697..1653 | 99 | | Plus |
BO09552.pep Sequence
Translation from 16 to 1669
> BO09552.pep
MGELQAGKSPFKTRNTFDENLKIWSGGEKRSLFSPDLSIGEIIFQQMERN
AMLTAQISVTENTELTWKDIQTNAMKVASYMRKLGLEQGDFVGVIGRLTT
HLTALAYACFFNGTPYHALHTEYEQSAIERLFGITKPRLIFCDGDEFEKV
QAATKGLQVQIVTMRNHPAGILRIQDILTTPVEMNFRPVRLKDGTDQLLA
ILSSSGTSGLPKAVTISNSHQIIGSFLPVDSSIIQYNPNTLDWASGITMT
INAAVFSLTSIIEDCDFDPANLCGLIEKYRISMVFVSSSQLAMLSNCPEF
YAADLSSVKYFFYGGSNCSLEVQNKIRSRLSNECVNFSYTLTELNSPGCL
NFNFDEKPNSVGRPVRGIQIKIVNELGEAQGPNVVGEICFNNGQKWPGYY
KNPEETKKMQDSENWFHTGDLGYMDEDGYLFIIDRLKDMLKYQTIMYYPS
EIESVIAEMPNVVEACVFGIWDPVYGDKAAASVVKKQGTQLEAQDVVEYV
RKRIPAKFKQLNGGALIVDHIIQSGNRKANRAATKAEFLRIMEKNASFLD
H
BO09552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-PA | 545 | CG5568-PA | 1..545 | 1..545 | 2836 | 100 | Plus |
| CG18586-PB | 545 | CG18586-PB | 1..545 | 1..545 | 2016 | 69.7 | Plus |
| CG18586-PC | 536 | CG18586-PC | 1..536 | 1..545 | 1982 | 69 | Plus |
| CG11407-PA | 538 | CG11407-PA | 2..531 | 10..539 | 1636 | 56.4 | Plus |
| CG6300-PA | 537 | CG6300-PA | 2..537 | 10..545 | 1575 | 53.9 | Plus |
