Clone Sequence Records
BO09555.complete Sequence
1795 bp assembled on 2009-07-30
GenBank Submission: KX796040
> BO09555.complete
GAAGTTATCAGTCGACATGCCCGTGGGTACGTTTGACGCCTGGGATGCGG
CCGTGCTGATCACCATCCTGGTCATATCGGCTCTGATTGGCATCTACTAC
CGGTATACAGGCGGCAAGCAAAAGACCACACAGGAGTATCTGATGGCGGA
CCAGAGCATGACCACTTTTCCGGTCTCCTTCAGCCTGATGGCAAGCTTCA
TGTCCGCCATCTCACTGATGGGCGTCTCCAACGAGTCCTACGAATTTGGT
ACCATCTTCTGTGTGATCAACATTGCCTACGTGCTGAGTACGCCCATTGC
CGCGTACTTCTTCCTTCCTGTTTTCTACAGGATGCGGACGACCAGTGTGT
ACGAGTATCTGGAGCGGCGCTTTGGCCAGGCCACCCGGCTGTCCGCCTCC
CTGGCCTTCACCGTGCAAATGGTGCTTTACATGGGCATTGCACTCTATGC
ACCAGCGCTCGCTTTAGAAGCTGTAACCGGCATTCATCGGTCAATGGCCA
TCGTGGTCATTGGACTGGTGTGCACCTTCTATTCGACACTTGGCGGCCTG
AAGGCGGTGCTCATCACGGATGTGTTTCAGTCCTTCCTCATGTTTGCCGC
CATCTACGCCGTGATTGCCGTGTCGGCCATTAAAGCCGGCGGATTCGCGG
CCATCTGGGATGTGGCTGTGGAGCGAGGACGCGTGAACTTCATTGAGTTT
TCATTGGATCCCACCGTGAGGCATACTTGGTGGTCTCTGATCATTGGCGG
CATGGTCACTTACCTCTCCTTGTATGGCGTTAATCAAACGCAAGTACAGC
GACTCCTGAGTGTCCGCAATTTGAAGAGCGCTCAGTCGGCGCTTTGGTGG
AACCTGCCCATCCTAGGAATGCTTAGTTTTAGCACCATTTTCAGTGGACT
GTCCATATTCTACTATTATCGAGATTGTGACCCTTTGCTAAAGGGACGCA
TCGACAAGCGGGATCAGATCATGCCCCTTTTCGCACTGGAGACTATGGGT
CAATATCCTGGACTGTGTGGTCTGTTCGTGTCCGGAATATTCTCCGCCAG
TCTTTCCACGATTTCGTCGGCAGTTACCTCGCTGTCGGCTGTAACACTGG
AGGATTACCTGAAGCCCTTGTACAAGGCGATATTTAAACGGACGCTAATT
GACTCCAAGTCCACGATGCCCACCAAGATTGTGGCGTGCATTTTTGGCCT
GCTTTGCATCGGTCTAGCTTTTGTCGCTGGCTCCATGGGCGGAGTTCTTC
AGGCATCGCTTACCATTTTCGGTGTGGTAGGCGGTCCGCTGCTGGCCATT
TTCACACTGGGAGTCTGCACTACACGCAGCAACCAAAGAGGCGTGCTGCT
TGGCTTCCTCGTTTCCCTGATAGTTTCCTTCTGGATGGGATTCGGCGGAC
CCAAACCAAAGCCAGTTACCTTGGAGTTTAGCACAGCGGGCTGTGAGAAT
GCCACCGCGGTAATGGCGCGTGCCATCGAGCTCAGCTCAAAGAGCAGCGG
AGTGGTCATCGAACCCGACTACTTCTGGTTATATCGAATTTCTTACTTGT
GGCTGAGCGTCATCGGCTTTCTTATTGCCGTGGTCGTCGGCTATTTCAGC
AGCATTGTGCTGGCTCACTGTGGAAAGGCAGAAAACGCGGAAATCTATTT
GGACAAGTCTCGGAAGCAGCTGGACTACGATCTCTTCGCACCCATGCTGT
CCCGCCGCTGGCGACGCCATAAAGAAGAACAAGACCAAACTGCCCAGGAC
GAAACGCTCACCAAACTAACTGAGCAGGCAAGCTTTCTAGACCAT
BO09555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 1764 | CG10444-PA | 1..1761 | 17..1777 | 8790 | 99.9 | Plus |
| CG32669-RA | 1815 | CG32669-PA | 155..578 | 177..600 | 395 | 72.9 | Plus |
| CG32669-RA | 1815 | CG32669-PA | 815..1098 | 837..1120 | 205 | 71.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 2790 | CG10444-RA | 260..2022 | 15..1777 | 8800 | 99.9 | Plus |
| CG32669-RA | 2385 | CG32669-RA | 317..740 | 177..600 | 395 | 72.9 | Plus |
| CG32669-RA | 2385 | CG32669-RA | 977..1260 | 837..1120 | 205 | 71.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20273255..20274240 | 1000..15 | 4915 | 99.9 | Minus |
| 2R | 25286936 | 2R | 20272421..20273200 | 1777..998 | 3900 | 100 | Minus |
| X | 23542271 | X | 10844342..10844765 | 600..177 | 395 | 72.9 | Minus |
| X | 23542271 | X | 10843822..10844105 | 1120..837 | 205 | 71.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:26:54 has no hits.
BO09555.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:35 Download gff for
BO09555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 288..2048 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:54 Download gff for
BO09555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 262..2022 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:49 Download gff for
BO09555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 262..2022 | 17..1779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:49 Download gff for
BO09555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20272419..20273199 | 999..1779 | 99 | <- | Minus |
| 2R | 20273257..20274238 | 17..998 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:54 Download gff for
BO09555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16159924..16160704 | 999..1779 | 99 | <- | Minus |
| arm_2R | 16160762..16161743 | 17..998 | 99 | | Minus |
BO09555.3prime Sequence
875 bp (873 high quality bases) assembled on 2006-01-23
> BO09555.3prime
ATGGTCTAGAAAGCTTGCCTGCTCAGTTAGTTTGGTGAGCGTTTCGTCCT
GGGCAGTTTGGTCTTGTTCTTCTTTATGGCGTCGCCAGCGGCGGGACAGC
ATGGGTGCGAAGAGATCGTAGTCCAGCTGCTTCCGAGACTTGTCCAAATA
GATTTCCGCGTTTTCTGCCTTTCCACAGTGAGCCAGCACAATGCTGCTGA
AATAGCCGACGACCACGGCAATAAGAAAGCCGATGACGCTCAGCCACAAG
TAAGAAATTCGATATAACCAGAAGTAGTCGGGTTCGATGACCACTCCGCT
GCTCTTTGAGCTGAGCTCGATGGCACGCGCCATTACCGCGGTGGCATTCT
CACAGCCCGCTGTGCTAAACTCCAAGGTAACTGGCTTTGGTTTGGGTCCG
CCGAATCCCATCCAGAAGGAAACTATCAGGGAAACGAGGAAGCCAAGCAG
CACGCCTCTTTGGTTGCTGCGTGTAGTGCAGACTCCCAGTGTGAAAATGG
CCAGCAGCGGACCGCCTACCACACCGAAAATGGTAAGCGATGCCTGAAGA
ACTCCGCCCATGGAGCCAGCGACAAAAGCTAGACCGATGCAAAGCAGGCC
AAAAATGCACGCCACAATCTTGGTGGGCATCGTGGACTTGGAGTCAATTA
GCGTCCGTTTAAATATCGCCTTGTACAAGGGCTTCAGGTAATCCTCCAGT
GTTACAGCCGACAGCGAGGTAACTGCCGACGAAATCGTGGAAAGACTGGC
GGAGAATATTCCGGACACGAACAGACCACACAGTCCAGGATATTGACCCA
TAGTCTCCAGTGCGAAAAGGGGCATGATCTGATCCCGCTTGTCGATGCGT
CCCTTTAGCAAAGGGTCACAATCTC
BO09555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-PA | 1764 | CG10444-RA | 905..1761 | 875..19 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 2790 | CG10444-RA | 1166..2022 | 875..19 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20272421..20273200 | 19..798 | 3900 | 100 | Plus |
| 2R | 25286936 | 2R | 20273255..20273334 | 796..875 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:06:13 has no hits.
BO09555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:04 Download gff for
BO09555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-PA | 905..1764 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:15 Download gff for
BO09555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-PA | 905..1764 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:47:47 Download gff for
BO09555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 1166..2027 | 11..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:06 Download gff for
BO09555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 1166..2027 | 11..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:06 Download gff for
BO09555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20272416..20273199 | 11..797 | 99 | <- | Plus |
| 2R | 20273257..20273334 | 798..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:47:47 Download gff for
BO09555.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16159921..16160704 | 11..797 | 99 | <- | Plus |
| arm_2R | 16160762..16160839 | 798..875 | 100 | | Plus |
BO09555.5prime Sequence
951 bp (821 high quality bases) assembled on 2006-01-23
> BO09555.5prime
GAAGTTATCAGTCGACATGCCCGTGGGTACGTTTGACGCCTGGGATGCGG
CCGTGCTGATCACCATCCTGGTCATATCGGCTCTGATTGGCATCTACTAC
CGGTATACAGGCGGCAAGCAAAAGACCACACAGGAGTATCTGATGGCGGA
CCAGAGCATGACCACTTTTCCGGTCTCCTTCAGCCTGATGGCAAGCTTCA
TGTCCGCCATCTCACTGATGGGCGTCTCCAACGAGTCCTACGAATTTGGT
ACCATCTTCTGTGTGATCAACATTGCCTACGTGCTGAGTACGCCCATTGC
CGCGTACTTCTTCCTTCCTGTTTTCTACAGGATGCGGACGACCAGTGTGT
ACGAGTATCTGGAGCGGCGCTTTGGCCAGGCCACCCGGCTGTCCGCCTCC
CTGGCCTTCACCGTGCAAATGGTGCTTTACATGGGCATTGCACTCTATGC
ACCAGCGCTCGCTTTAGAAGCTGTAACCGGCATTCATCGGTCAATGGCCA
TCGTGGTCATTGGACTGGTGTGCACCTTCTATTCGACACTTGGCGGCCTG
AAGGCGGTGCTCATCACGGATGTGTTTCAGTCCTTCCTCATGTTTGCCGC
CATCTACGCCGTGATTGCCGTGTCGGCCATTAAAGCCGGCGGATTCGCGG
CCATCTGGGATGTGGCTGTGGAGCGAGGACGCGTGAACTTCATTGAGTTT
TCATTGGATCCCACCGTGAGGCATACTTGGTGGTCTCTGATCATTGGCGG
CATGGTCACTTACCTCTCCTTGTATGGCGTTAATCAAACGCAAGTACAGC
GACTCCTGAGTGTCCGCAATTTGAAGAGCGCTCAGTCGGCGCTTTGGTGG
AACCTGCCCATCCTAGGAATGCTTAGTTTTAGCACCATTTTCAGTGGACT
GTCCATATTCTACTATTATCGAGATTGTGACCCTTTGCTAAAGGGACGCA
T
BO09555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-PA | 1764 | CG10444-RA | 1..935 | 17..951 | 4650 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-RA | 2790 | CG10444-RA | 260..1196 | 15..951 | 4670 | 99.9 | Plus |
| CG32669-RA | 2385 | CG32669-RA | 317..740 | 177..600 | 420 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20273304..20274240 | 951..15 | 4670 | 99.9 | Minus |
| X | 23542271 | X | 10844342..10844765 | 600..177 | 395 | 72.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:26:36 has no hits.
BO09555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:05 Download gff for
BO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:16 Download gff for
BO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:13:57 Download gff for
BO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 255..1196 | 9..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:02 Download gff for
BO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10444-RA | 255..1196 | 9..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:02 Download gff for
BO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20273304..20274245 | 9..951 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:13:57 Download gff for
BO09555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16160809..16161750 | 9..951 | 99 | | Minus |
BO09555.pep Sequence
Translation from 16 to 1795
> BO09555.pep
MPVGTFDAWDAAVLITILVISALIGIYYRYTGGKQKTTQEYLMADQSMTT
FPVSFSLMASFMSAISLMGVSNESYEFGTIFCVINIAYVLSTPIAAYFFL
PVFYRMRTTSVYEYLERRFGQATRLSASLAFTVQMVLYMGIALYAPALAL
EAVTGIHRSMAIVVIGLVCTFYSTLGGLKAVLITDVFQSFLMFAAIYAVI
AVSAIKAGGFAAIWDVAVERGRVNFIEFSLDPTVRHTWWSLIIGGMVTYL
SLYGVNQTQVQRLLSVRNLKSAQSALWWNLPILGMLSFSTIFSGLSIFYY
YRDCDPLLKGRIDKRDQIMPLFALETMGQYPGLCGLFVSGIFSASLSTIS
SAVTSLSAVTLEDYLKPLYKAIFKRTLIDSKSTMPTKIVACIFGLLCIGL
AFVAGSMGGVLQASLTIFGVVGGPLLAIFTLGVCTTRSNQRGVLLGFLVS
LIVSFWMGFGGPKPKPVTLEFSTAGCENATAVMARAIELSSKSSGVVIEP
DYFWLYRISYLWLSVIGFLIAVVVGYFSSIVLAHCGKAENAEIYLDKSRK
QLDYDLFAPMLSRRWRRHKEEQDQTAQDETLTKLTEQASFLDH
BO09555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10444-PA | 587 | CG10444-PA | 1..587 | 1..587 | 2977 | 100 | Plus |
| CG32669-PA | 604 | CG32669-PA | 1..565 | 3..569 | 1754 | 58.2 | Plus |
| CG9657-PB | 601 | CG9657-PB | 17..585 | 10..572 | 885 | 36.2 | Plus |
| CG9657-PA | 601 | CG9657-PA | 17..585 | 10..572 | 885 | 36.2 | Plus |
| CG5687-PB | 683 | CG5687-PB | 95..621 | 5..532 | 884 | 35.7 | Plus |
