Clone BO09556 Report

Search the DGRC for BO09556

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG30104-RA
Protein status:BO09556.pep: Imported from assembly
Sequenced Size:1789

Clone Sequence Records

BO09556.complete Sequence

1789 bp assembled on 2009-07-30

> BO09556.complete
GAAGTTATCAGTCGACATGCAGTCACGTTGGCTTTGCGGGATCTTCGTGA
TCGTCCTGGCCCATTGGACACGGGCCAATCCAATTTTGAGCCATCCCAAA
GTGGCCACCGAGTTCATCATCCTCCATAATAATGATATGCATGCCCGTTT
CGATCAGACGAGCGTTAATAGCGGCACCTGCCCACCGGAGGATGTACATA
CGAATAAATGCTATGGAGGATTCGCCAGGGTGGCCCACGAAGTTCGAAAG
TATCGTAAGGAGGCTCAGGAGGGCGGTACCTCCGTATTGTACTTAAATGC
TGGTGATACCTACACTGGAACCTCTTGGTTTACTATTTTCAAGGACAAAA
TCGCCAGTGCTTTCCTTAACAAATTGAAACCGGATGCTATATCCTTGGGC
AATCATGAGTTTGATGAGAGAGTAGAGGGTCTAATACCCTTCCTCAACGA
GGTCACCTTTCCTGTACTCGCCTGTAATCTGGACCTAAGCAAGGTTCCCC
AACTGAAGGCCACTTGGCACTTGGCTAACTCCGCCATTCTGGAGACCAAT
GGCACTAAGGTCGGTGTCATAGGTTATTTGACTCCAGATACCAAAAAACT
TACTCTCAACATGGATGTGGAGTTCAACGAGGAGGTGGAGTCCATTAATG
TTGAAGCAAAAAAACTGAAGGCACAGGGCATCAAAATCATTATCGCTCTT
GGCCACTCGGGTTATTTGAAGGATCTGGAGATAGCCAAGAACTGTCCGGA
GGTGGATATTGTCATTGGTGGCCATACGAACACCTTTCTCTACACCGGTG
CCCAGCCGGATGCGGAGCACATAGATGGACCGTATCCAACGATGGTCAAG
CAGAACAGTGGCAAGGAGGTTCCCGTTGTGCAGGCCTATGCGTATACCAA
ATATTTGGGAAAACTGCATGTACAGTTTGATGCCGATGGCAACCTCATCC
AGTGGGATGGATCTCCCATCCTGCTCAATGCTTCAGTGGCTCAGGAGCAG
GACCTTCTCGATCTATTGGAGGTCTTTCGTCCGAATGTCACCAGGCTGGA
GAAGTCGGTCGTCGGGCACACCAAGGTTCATCTGGAGGGCAACAAGGCGG
TTTGCCGGGCCGAGGAGTGCAACCTGGGCAATCTGATAGCCGATGCAATG
GTGTTTAGTCGCCTGATGGAGGAGCAGGGCGGTGATTTCTGGACAGATGC
TGCCATTTCTATAATGCAGGGCGGAGGCATTCGCAGCTCCATTGAAAAGC
GATCGGATGGCGCCATCACCGACAACGATATCCTTTCCGTTCTGCCCTGG
GGTAATAAGCTCTATATGGTGCCCATGACGGGTAGCACTATTCGTCGAGC
CTTAGAGCATGGAGCTGCCCTGAGAGGCAAAGATTCGGACGGTGGCTTCC
TGCAGGTGTCCGGAATCCGTGTGGTTTTCAATTCGAACAAGCCCGAGGGT
CAGCGAGTGGTTTCCGTGCAGGTTCGATGTGCCGCCTGCCGAGTGCCCAC
CTATAGTGATCTGAATGATACTGCCATCTACAATGTCGTCCTGGGAGAGT
TCCTGCTAGATGGTGGCGATGGACATGTAATGAGGGACTCAGCCCACCAA
CCACAGCGCCTGCAAAATAACGATCTCGAGGCGGTATCCCAATATCTGAA
CCAGCGTGACTATGTCTATCCCGAGATCGAGGGTCGTATTATTTTCATTA
ATGCATCCAGTACACTTATGGGCTCGGCAGCCCTGCTTCTTATCTCTTCC
CTTCTGATAAAAATTATAGCTGCAAGCTATCAAGACCAT

BO09556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-RA 1758 CG30104-PA 1..1755 17..1771 8760 99.9 Plus
NT5E-2-RB 1758 CG30104-PB 1..1755 17..1771 8760 99.9 Plus
veil-RB 1800 CG4827-PB 95..779 99..783 755 74 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-RA 2062 CG30104-RA 134..1888 17..1771 8760 99.9 Plus
NT5E-2-RB 1960 CG30104-RB 32..1786 17..1771 8760 99.9 Plus
veil-RB 2220 CG4827-RB 334..1018 99..783 755 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17492449..17492995 1225..1771 2720 99.8 Plus
2R 25286936 2R 17492086..17492390 923..1227 1525 100 Plus
2R 25286936 2R 17491739..17492015 649..925 1385 100 Plus
2R 25286936 2R 17491425..17491681 392..648 1285 100 Plus
2R 25286936 2R 17490940..17491163 17..240 1120 100 Plus
2R 25286936 2R 17491215..17491365 241..391 755 100 Plus
2R 25286936 2R 17480663..17480785 661..783 285 82.1 Plus
2R 25286936 2R 17479918..17480053 99..234 275 80.1 Plus
2R 25286936 2R 17480121..17480248 245..372 235 78.9 Plus
2R 25286936 2R 17481201..17481314 1114..1227 195 78.1 Plus
Blast to na_te.dros performed on 2014-11-28 01:26:28 has no hits.

BO09556.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:29 Download gff for BO09556.complete
Subject Subject Range Query Range Percent Splice Strand
CG30104-RA 111..1864 17..1773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:39 Download gff for BO09556.complete
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 32..1785 17..1773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:38 Download gff for BO09556.complete
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 32..1785 17..1773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:38 Download gff for BO09556.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17490940..17491163 17..240 100 -> Plus
2R 17491215..17491365 241..391 100 -> Plus
2R 17491425..17491681 392..648 100 -> Plus
2R 17491739..17492015 649..925 100 -> Plus
2R 17492089..17492389 926..1226 100 -> Plus
2R 17492451..17492994 1227..1773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:39 Download gff for BO09556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13378445..13378668 17..240 100 -> Plus
arm_2R 13378720..13378870 241..391 100 -> Plus
arm_2R 13378930..13379186 392..648 100 -> Plus
arm_2R 13379244..13379520 649..925 100 -> Plus
arm_2R 13379594..13379894 926..1226 100 -> Plus
arm_2R 13379956..13380499 1227..1773 99   Plus

BO09556.3prime Sequence

926 bp (759 high quality bases) assembled on 2006-01-23

> BO09556.3prime
ATGGTCTTGATAGCTTGCAGCTATAATTTTTATCAGAAGGGAAGAGATAA
GAAGCAGGGCTGCCGAGCCCATAAGTGTACTGGATGCATTAATGAAAATA
ATACGACCCTCGATCTCGGGATAGACATAGTCACGCTGGTTCAGATATTG
GGATACCGCCTCGAGATCGTTATTTTGCAGGCGCTGTGGTTGGTGGGCTG
AGTCCCTCATTACATGTCCATCGCCACCATCTAGCAGGAACTCTCCCAGG
ACGACATTGTAGATGGCAGTATCATTCAGATCACTATAGGTGGGCACTCG
GCAGGCGGCACATCGAACCTGCACGGAAACCACTCGCTGACCCTCGGGCT
TGTTCGAATTGAAAACCACACGGATTCCGGACACCTGCAGGAAGCCACCG
TCCGAATCTTTGCCTCTCAGGGCAGCTCCATGCTCTAAGGCTCGACGAAT
AGTGCTACCCGTCATGGGCACCATATAGAGCTTATTACCCCAGGGCAGAA
CGGAAAGGATATCGTTGTCGGTGATGGCGCCATCCGATCGCTTTTCAATG
GAGCTGCGAATGCCTCCGCCCTGCATTATAGAAATGGCAGCATCTGTCCA
GAAATCACCGCCCTGCTCCTCCATCAGGCGACTAAACACCATTGCATCGG
CTATCAGATTGCCCAGGTTGCACTCCTCGGCCCGGCAAACCGCCTTGTTG
CCCTCCAGATGAACCTTGGTGTGCCCGACGACCGACTTCTCCAGCCTGGT
GACATTCGGACGAAAGACCTCCAATAGATCGAGAAGGTCCTGCTCCTGAG
CCACTGAAGCATTGAGCAGGATGGGAGATCCATCCCACTGGATGAGGTTG
CCATCGGCATCAAACTGTACATGCAGTTTTCCCAAATATTTGGTATACGC
ATAGGCCTGCACAACGGGAACCTCCT

BO09556.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30104-PB 1758 CG30104-RB 848..1751 926..23 4520 100 Minus
CG30104-PA 1758 CG30104-RA 848..1751 926..23 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-RA 2062 CG30104-RA 981..1888 926..19 4525 99.9 Minus
NT5E-2-RB 1960 CG30104-RB 879..1786 926..19 4525 99.9 Minus
veil-RB 2220 CG4827-RB 1120..1490 923..550 305 73.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17492449..17492995 565..19 2720 99.8 Minus
2R 25286936 2R 17492086..17492390 867..563 1525 100 Minus
2R 25286936 2R 17491954..17492015 926..865 310 100 Minus
2R 25286936 2R 17481201..17481314 676..563 195 78.1 Minus
Blast to na_te.dros performed on 2015-02-01 06:43:16 has no hits.

BO09556.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:06 Download gff for BO09556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30104-PA 848..1758 15..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:17 Download gff for BO09556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30104-PA 848..1758 15..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:40 Download gff for BO09556.3prime
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 879..1793 11..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:25 Download gff for BO09556.3prime
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 879..1793 11..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:25 Download gff for BO09556.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17491954..17492015 865..926 100 -> Minus
2R 17492089..17492389 564..864 100 -> Minus
2R 17492451..17493002 11..563 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:40 Download gff for BO09556.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13379459..13379520 865..926 100 -> Minus
arm_2R 13379594..13379894 564..864 100 -> Minus
arm_2R 13379956..13380507 11..563 99   Minus

BO09556.5prime Sequence

908 bp (832 high quality bases) assembled on 2006-01-23

> BO09556.5prime
GAAGTTATCAGTCGACATGCAGTCACGTTGGCTTTGCGGGATCTTCGTGA
TCGTCCTGGCCCATTGGACACGGGCCAATCCAATTTTGAGCCATCCCAAA
GTGGCCACCGAGTTCATCATCCTCCATAATAATGATATGCATGCCCGTTT
CGATCAGACGAGCGTTAATAGCGGCACCTGCCCACCGGAGGATGTACATA
CGAATAAATGCTATGGAGGATTCGCCAGGGTGGCCCACGAAGTTCGAAAG
TATCGTAAGGAGGCTCAGGAGGGCGGTACCTCCGTATTGTACTTAAATGC
TGGTGATACCTACACTGGAACCTCTTGGTTTACTATTTTCAAGGACAAAA
TCGCCAGTGCTTTCCTTAACAAATTGAAACCGGATGCTATATCCTTGGGC
AATCATGAGTTTGATGAGAGAGTAGAGGGTCTAATACCCTTCCTCAACGA
GGTCACCTTTCCTGTACTCGCCTGTAATCTGGACCTAAGCAAGGTTCCCC
AACTGAAGGCCACTTGGCACTTGGCTAACTCCGCCATTCTGGAGACCAAT
GGCACTAAGGTCGGTGTCATAGGTTATTTGACTCCAGATACCAAAAAACT
TACTCTCAACATGGATGTGGAGTTCAACGAGGAGGTGGAGTCCATTAATG
TTGAAGCAAAAAAACTGAAGGCACAGGGCATCAAAATCATTATCGCTCTT
GGCCACTCGGGTTATTTGAAGGATCTGGAGATAGCCAAGAACTGTCCGGA
GGTGGATATTGTCATTGGTGGCCATACGAACACCTTTCTCTACACCGGTG
CCCAGCCGGATGCGGAGCACATAGATGGACCGTATCCAACGATGGTCAAG
CAGAACAGTGGCAAGGAGGTTCCCGTTGTGCANGCCTATGCGTATACCAA
ATATTTGG

BO09556.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG30104-PB 1758 CG30104-RB 1..892 17..908 4441 99.8 Plus
CG30104-PA 1758 CG30104-RA 1..892 17..908 4441 99.8 Plus
CG4827-PA 1800 CG4827-RA 715..771 719..775 160 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-RA 2062 CG30104-RA 134..1025 17..908 4449 99.9 Plus
NT5E-2-RB 1960 CG30104-RB 32..923 17..908 4449 99.9 Plus
veil-RB 2220 CG4827-RB 334..1018 99..783 770 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17491739..17491998 649..908 1289 99.6 Plus
2R 25286936 2R 17491425..17491681 392..648 1285 100 Plus
2R 25286936 2R 17490940..17491163 17..240 1120 100 Plus
2R 25286936 2R 17491215..17491365 241..391 755 100 Plus
2R 25286936 2R 17480663..17480785 661..783 285 82.1 Plus
2R 25286936 2R 17479918..17480053 99..234 275 80.1 Plus
2R 25286936 2R 17480121..17480248 245..372 235 78.9 Plus
Blast to na_te.dros performed on 2015-02-12 20:08:26 has no hits.

BO09556.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:07 Download gff for BO09556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30104-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:19 Download gff for BO09556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30104-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:40 Download gff for BO09556.5prime
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 27..923 10..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:58 Download gff for BO09556.5prime
Subject Subject Range Query Range Percent Splice Strand
NT5E-2-RB 27..923 10..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:58 Download gff for BO09556.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17490940..17491163 17..240 100 -> Plus
2R 17491215..17491365 241..391 100 -> Plus
2R 17491425..17491681 392..648 100 -> Plus
2R 17491739..17491998 649..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:40 Download gff for BO09556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13378445..13378668 17..240 100 -> Plus
arm_2R 13378720..13378870 241..391 100 -> Plus
arm_2R 13378930..13379186 392..648 100 -> Plus
arm_2R 13379244..13379503 649..908 99   Plus

BO09556.pep Sequence

Translation from 16 to 1789

> BO09556.pep
MQSRWLCGIFVIVLAHWTRANPILSHPKVATEFIILHNNDMHARFDQTSV
NSGTCPPEDVHTNKCYGGFARVAHEVRKYRKEAQEGGTSVLYLNAGDTYT
GTSWFTIFKDKIASAFLNKLKPDAISLGNHEFDERVEGLIPFLNEVTFPV
LACNLDLSKVPQLKATWHLANSAILETNGTKVGVIGYLTPDTKKLTLNMD
VEFNEEVESINVEAKKLKAQGIKIIIALGHSGYLKDLEIAKNCPEVDIVI
GGHTNTFLYTGAQPDAEHIDGPYPTMVKQNSGKEVPVVQAYAYTKYLGKL
HVQFDADGNLIQWDGSPILLNASVAQEQDLLDLLEVFRPNVTRLEKSVVG
HTKVHLEGNKAVCRAEECNLGNLIADAMVFSRLMEEQGGDFWTDAAISIM
QGGGIRSSIEKRSDGAITDNDILSVLPWGNKLYMVPMTGSTIRRALEHGA
ALRGKDSDGGFLQVSGIRVVFNSNKPEGQRVVSVQVRCAACRVPTYSDLN
DTAIYNVVLGEFLLDGGDGHVMRDSAHQPQRLQNNDLEAVSQYLNQRDYV
YPEIEGRIIFINASSTLMGSAALLLISSLLIKIIAASYQDH

BO09556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
NT5E-2-PA 585 CG30104-PA 1..585 1..585 3042 100 Plus
NT5E-2-PB 585 CG30104-PB 1..585 1..585 3042 100 Plus
veil-PB 599 CG4827-PB 17..599 13..584 1922 63.5 Plus
veil-PA 599 CG4827-PA 17..599 13..584 1922 63.5 Plus
CG30103-PA 584 CG30103-PA 26..550 32..557 1230 44.7 Plus