Clone BO09559 Report

Search the DGRC for BO09559

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG10814-RA
Protein status:BO09559.pep: Imported from assembly
Sequenced Size:1240

Clone Sequence Records

BO09559.3prime Sequence

908 bp (817 high quality bases) assembled on 2006-01-23

> BO09559.3prime
ATGGTCTAGAAAGCTTGCGGTGGCTTTGGCATTCCGCAGGACCCTCAGGC
GCGAGTACACAATGTCCCAGTCAACGAAGGCGCCCAGAATGTGGCGCACA
TTGCGGTCCGTGTCGTCGTACCCGGTACGTCCGTGGACCAGGCGCAAATT
GTCGAACGTGAGCACGTCGCCGGGCGTGGTCTTGAATCTGCAGGAGTGCT
CGTGGGCCAGGCCCACAAAGGTGGCCATCGCCTCGTACCACGGACGCACC
TGCTCCACCGGCACGCTAAAGTGGCTGTCGCGCTGCGGAATGCTGTGGTT
GATGCGCACACACCGGCCCTCCGCGTCCAAGTTGATGACCGGTGCCCTCC
AGATATTGTGAAACTGCAGATCGCCGTCGCTTCCGATGTCCGCCCAGTCC
ACGGGAGTCTGGCAAAGAACCCGGAACTGCTCCGGATAGCGTTCCCTCAT
CACCTCCGCCACATAGAAGGCATCGGCCAGCAGATTGACACCCCCGGGCG
ACGCGGACTGCTCCAAGGTGTGCAACATGGTCACTCCGGGCAGGTACTCA
AAGTAGGGCATATCCGTGTGTAGCGGGAGTGGTGCGGCCAAGTAGGCGTA
GTTGCTGCCTCCAGGCTGAGCCCGAACACTGAACTCCTCTCCATAGGTGG
TGCGCCTCATGAAGCCCACTCGGTTGGACAATCTCCGAAGGACGTCCATA
TCGAGAGGGGCTTCCTTGACCATGGCCACTCCGTANACTGCCAGATGCTG
GAGCCATTGCTGCAACGCCGAATCGCAATCGAGCAGTTCTTGGTAGTAGA
ACACCTGACGGATTTTCTCAAAGTCCAGACCGCTCCACAACTTCTGCTCC
GGGCGGTAAAGTCACGCAGGTAACGCTGGCGATTCGCGTATGAGAAGTCC
CGCTCCCT

BO09559.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-PA 1209 CG10814-RA 365..1206 860..19 4191 99.8 Minus
CG10814-PA 1209 CG10814-RA 316..366 908..858 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1458 CG10814-RA 359..1249 908..19 4419 99.8 Minus
CG5321-RC 1293 CG5321-RC 920..1244 365..41 260 73.2 Minus
CG5321-RB 1780 CG5321-RB 920..1244 365..41 260 73.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13376796..13377373 332..908 2829 99.7 Plus
2R 25286936 2R 13376184..13376496 19..331 1565 100 Plus
X 23542271 X 14680592..14680882 331..41 195 71.1 Minus
Blast to na_te.dros performed on 2015-02-10 17:52:48 has no hits.

BO09559.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:12 Download gff for BO09559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-PA 316..1209 16..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:26 Download gff for BO09559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-PA 316..1209 16..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:16:18 Download gff for BO09559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 359..1259 8..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:48 Download gff for BO09559.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 359..1259 8..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:48 Download gff for BO09559.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13376174..13376496 8..331 98 <- Plus
2R 13376796..13377373 332..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:16:18 Download gff for BO09559.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9263679..9264001 8..331 98 <- Plus
arm_2R 9264301..9264878 332..908 99   Plus

BO09559.5prime Sequence

923 bp (814 high quality bases) assembled on 2006-01-23

> BO09559.5prime
GAAGTTATCAGTCGTCATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCC
AACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTT
CAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCT
GCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTA
GATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGG
CAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGG
ACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCAT
ACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAG
TTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCA
AGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGG
CAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTC
CTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGG
AGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACT
TGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTG
CCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGG
TGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAAC
GCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCG
GACATCGGAAGCGACGGCGATCTGCAGTTTCACATATCTGGAGGGCACGG
TCATCAACTGGACGCGGAGGGGC

BO09559.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-PA 1209 CG10814-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1458 CG10814-RA 44..951 17..921 4465 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13376806..13377688 898..17 4365 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:31:52 has no hits.

BO09559.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:14 Download gff for BO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-PA 1..909 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:27 Download gff for BO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-PA 1..909 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:48 Download gff for BO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 44..952 17..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:26 Download gff for BO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 44..952 17..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:26 Download gff for BO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13376796..13377688 17..907 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:48 Download gff for BO09559.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9264301..9265193 17..907 99   Minus

BO09559.complete Sequence

1240 bp assembled on 2008-08-15

GenBank Submission: FJ631531

> BO09559.complete
GAAGTTATCAGTCGTCATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCC
AACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTT
CAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCT
GCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTA
GATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGG
CAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGG
ACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCAT
ACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAG
TTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCA
AGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGG
CAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTC
CTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGG
AGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACT
TGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTG
CCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGG
TGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAAC
GCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCG
GACATCGGAAGCGACGGCGATCTGCAGTTTCACAATATCTGGAGGGCACC
GGTCATCAACTTGGACGCGGAGGGCCGGTGTGTGCGCATCAACCACAGCA
TTCCGCAGCGCGACAGCCACTTTAGCGTGCCGGTGGAGCAGGTGCGTCCG
TGGTACGAGGCGATGGCCACCTTTGTGGGCCTGGCCCACGAGCACTCCTG
CAGATTCAAGACCACGCCCGGCGACGTGCTCACGTTCGACAATTTGCGCC
TGGTCCACGGACGTACCGGGTACGACGACACGGACCGCAATGTGCGCCAC
ATTCTGGGCGCCTTCGTTGACTGGGACATTGTGTACTCGCGCCTGAGGGT
CCTGCGGAATGCCAAAGCCACCGCAAGCTTTCTAGACCAT

BO09559.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1209 CG10814-PA 1..1206 17..1222 6030 100 Plus
CG5321-RC 1242 CG5321-PC 884..1208 876..1200 260 72 Plus
CG5321-RB 1242 CG5321-PB 884..1208 876..1200 260 72 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-RA 1458 CG10814-RA 44..1249 17..1222 6030 100 Plus
CG5321-RC 1293 CG5321-RC 920..1244 876..1200 260 72 Plus
CG5321-RB 1780 CG5321-RB 920..1244 876..1200 260 72 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13376796..13377688 909..17 4465 100 Minus
2R 25286936 2R 13376184..13376496 1222..910 1565 100 Minus
X 23542271 X 14680592..14680882 910..1200 195 71.1 Plus
Blast to na_te.dros performed on 2014-11-27 16:41:23 has no hits.

BO09559.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:54 Download gff for BO09559.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 27..1242 17..1233 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:47 Download gff for BO09559.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 49..1249 22..1224 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:15 Download gff for BO09559.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 32..1232 22..1224 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:23 Download gff for BO09559.complete
Subject Subject Range Query Range Percent Splice Strand
CG10814-RA 49..1249 22..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:23 Download gff for BO09559.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13376181..13376496 910..1224 99 <- Minus
2R 13376796..13377683 22..909 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:47 Download gff for BO09559.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9263686..9264001 910..1224 99 <- Minus
arm_2R 9264301..9265188 22..909 100   Minus

BO09559.pep Sequence

Translation from 16 to 1240

> BO09559.pep
MFQADRRDLPSQPLKLALPKEQDQSRLVQVPDPDRRDMQFPDIWLRDNCR
CEECYLPQTLSRLPQLWNHLDTSVRVLRQSVDVDQRVLCIEWSDGHTSQY
PFSWLRERDFSYANRQRYLRDFYRPEQKLWSGLDFEKIRQVFYYQELLDC
DSALQQWLQHLAVYGVAMVKEAPLDMDVLRRLSNRVGFMRRTTYGEEFSV
RAQPGGSNYAYLAAPLPLHTDMPYFEYLPGVTMLHTLEQSASPGGVNLLA
DAFYVAEVMRERYPEQFRVLCQTPVDWADIGSDGDLQFHNIWRAPVINLD
AEGRCVRINHSIPQRDSHFSVPVEQVRPWYEAMATFVGLAHEHSCRFKTT
PGDVLTFDNLRLVHGRTGYDDTDRNVRHILGAFVDWDIVYSRLRVLRNAK
ATASFLDH

BO09559.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10814-PA 402 CG10814-PA 1..402 1..402 2173 100 Plus
CG5321-PC 413 CG5321-PC 32..411 23..404 1144 54.5 Plus
CG5321-PB 413 CG5321-PB 32..411 23..404 1144 54.5 Plus
CG14630-PA 406 CG14630-PA 30..405 28..400 959 46.4 Plus
CG4335-PA 364 CG4335-PA 11..360 36..396 316 25.1 Plus