Clone Sequence Records
BO09559.3prime Sequence
908 bp (817 high quality bases) assembled on 2006-01-23
> BO09559.3prime
ATGGTCTAGAAAGCTTGCGGTGGCTTTGGCATTCCGCAGGACCCTCAGGC
GCGAGTACACAATGTCCCAGTCAACGAAGGCGCCCAGAATGTGGCGCACA
TTGCGGTCCGTGTCGTCGTACCCGGTACGTCCGTGGACCAGGCGCAAATT
GTCGAACGTGAGCACGTCGCCGGGCGTGGTCTTGAATCTGCAGGAGTGCT
CGTGGGCCAGGCCCACAAAGGTGGCCATCGCCTCGTACCACGGACGCACC
TGCTCCACCGGCACGCTAAAGTGGCTGTCGCGCTGCGGAATGCTGTGGTT
GATGCGCACACACCGGCCCTCCGCGTCCAAGTTGATGACCGGTGCCCTCC
AGATATTGTGAAACTGCAGATCGCCGTCGCTTCCGATGTCCGCCCAGTCC
ACGGGAGTCTGGCAAAGAACCCGGAACTGCTCCGGATAGCGTTCCCTCAT
CACCTCCGCCACATAGAAGGCATCGGCCAGCAGATTGACACCCCCGGGCG
ACGCGGACTGCTCCAAGGTGTGCAACATGGTCACTCCGGGCAGGTACTCA
AAGTAGGGCATATCCGTGTGTAGCGGGAGTGGTGCGGCCAAGTAGGCGTA
GTTGCTGCCTCCAGGCTGAGCCCGAACACTGAACTCCTCTCCATAGGTGG
TGCGCCTCATGAAGCCCACTCGGTTGGACAATCTCCGAAGGACGTCCATA
TCGAGAGGGGCTTCCTTGACCATGGCCACTCCGTANACTGCCAGATGCTG
GAGCCATTGCTGCAACGCCGAATCGCAATCGAGCAGTTCTTGGTAGTAGA
ACACCTGACGGATTTTCTCAAAGTCCAGACCGCTCCACAACTTCTGCTCC
GGGCGGTAAAGTCACGCAGGTAACGCTGGCGATTCGCGTATGAGAAGTCC
CGCTCCCT
BO09559.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-PA | 1209 | CG10814-RA | 365..1206 | 860..19 | 4191 | 99.8 | Minus |
CG10814-PA | 1209 | CG10814-RA | 316..366 | 908..858 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-RA | 1458 | CG10814-RA | 359..1249 | 908..19 | 4419 | 99.8 | Minus |
CG5321-RC | 1293 | CG5321-RC | 920..1244 | 365..41 | 260 | 73.2 | Minus |
CG5321-RB | 1780 | CG5321-RB | 920..1244 | 365..41 | 260 | 73.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13376796..13377373 | 332..908 | 2829 | 99.7 | Plus |
2R | 25286936 | 2R | 13376184..13376496 | 19..331 | 1565 | 100 | Plus |
X | 23542271 | X | 14680592..14680882 | 331..41 | 195 | 71.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:52:48 has no hits.
BO09559.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:12 Download gff for
BO09559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-PA | 316..1209 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:26 Download gff for
BO09559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-PA | 316..1209 | 16..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:16:18 Download gff for
BO09559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 359..1259 | 8..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:48 Download gff for
BO09559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 359..1259 | 8..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:48 Download gff for
BO09559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13376174..13376496 | 8..331 | 98 | <- | Plus |
2R | 13376796..13377373 | 332..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:16:18 Download gff for
BO09559.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9263679..9264001 | 8..331 | 98 | <- | Plus |
arm_2R | 9264301..9264878 | 332..908 | 99 | | Plus |
BO09559.5prime Sequence
923 bp (814 high quality bases) assembled on 2006-01-23
> BO09559.5prime
GAAGTTATCAGTCGTCATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCC
AACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTT
CAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCT
GCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTA
GATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGG
CAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGG
ACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCAT
ACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAG
TTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCA
AGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGG
CAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTC
CTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGG
AGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACT
TGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTG
CCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGG
TGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAAC
GCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCG
GACATCGGAAGCGACGGCGATCTGCAGTTTCACATATCTGGAGGGCACGG
TCATCAACTGGACGCGGAGGGGC
BO09559.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-PA | 1209 | CG10814-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-RA | 1458 | CG10814-RA | 44..951 | 17..921 | 4465 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13376806..13377688 | 898..17 | 4365 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:31:52 has no hits.
BO09559.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:14 Download gff for
BO09559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-PA | 1..909 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:27 Download gff for
BO09559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-PA | 1..909 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:48 Download gff for
BO09559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 44..952 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:26 Download gff for
BO09559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 44..952 | 17..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:26 Download gff for
BO09559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13376796..13377688 | 17..907 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:48 Download gff for
BO09559.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9264301..9265193 | 17..907 | 99 | | Minus |
BO09559.complete Sequence
1240 bp assembled on 2008-08-15
GenBank Submission: FJ631531
> BO09559.complete
GAAGTTATCAGTCGTCATGTTCCAAGCGGACCGCCGAGATTTGCCCAGCC
AACCGCTTAAGTTGGCTCTGCCAAAGGAGCAGGATCAGTCGCGCCTGGTT
CAGGTTCCCGATCCTGATCGTCGGGACATGCAGTTTCCAGACATTTGGCT
GCGCGATAATTGCCGCTGCGAGGAGTGCTATCTGCCACAGACACTGAGTA
GATTGCCCCAGCTGTGGAACCATCTGGACACCAGTGTGCGGGTCCTGCGG
CAGAGCGTGGACGTGGACCAGAGGGTCCTGTGTATAGAGTGGTCCGATGG
ACATACCTCCCAGTATCCGTTCAGTTGGCTGAGGGAGCGGGACTTCTCAT
ACGCGAATCGCCAGCGTTACCTGCGTGACTTTTACCGCCCGGAGCAGAAG
TTGTGGAGCGGTCTGGACTTTGAGAAAATCCGTCAGGTGTTCTACTACCA
AGAACTGCTCGATTGCGATTCGGCGTTGCAGCAATGGCTCCAGCATCTGG
CAGTTTACGGAGTGGCCATGGTCAAGGAAGCCCCTCTCGATATGGACGTC
CTTCGGAGATTGTCCAACCGAGTGGGCTTCATGAGGCGCACCACCTATGG
AGAGGAGTTCAGTGTTCGGGCTCAGCCTGGAGGCAGCAACTACGCCTACT
TGGCCGCACCACTCCCGCTACACACGGATATGCCCTACTTTGAGTACCTG
CCCGGAGTGACCATGTTGCACACCTTGGAGCAGTCCGCGTCGCCCGGGGG
TGTCAATCTGCTGGCCGATGCCTTCTATGTGGCGGAGGTGATGAGGGAAC
GCTATCCGGAGCAGTTCCGGGTTCTTTGCCAGACTCCCGTGGACTGGGCG
GACATCGGAAGCGACGGCGATCTGCAGTTTCACAATATCTGGAGGGCACC
GGTCATCAACTTGGACGCGGAGGGCCGGTGTGTGCGCATCAACCACAGCA
TTCCGCAGCGCGACAGCCACTTTAGCGTGCCGGTGGAGCAGGTGCGTCCG
TGGTACGAGGCGATGGCCACCTTTGTGGGCCTGGCCCACGAGCACTCCTG
CAGATTCAAGACCACGCCCGGCGACGTGCTCACGTTCGACAATTTGCGCC
TGGTCCACGGACGTACCGGGTACGACGACACGGACCGCAATGTGCGCCAC
ATTCTGGGCGCCTTCGTTGACTGGGACATTGTGTACTCGCGCCTGAGGGT
CCTGCGGAATGCCAAAGCCACCGCAAGCTTTCTAGACCAT
BO09559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-RA | 1209 | CG10814-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
CG5321-RC | 1242 | CG5321-PC | 884..1208 | 876..1200 | 260 | 72 | Plus |
CG5321-RB | 1242 | CG5321-PB | 884..1208 | 876..1200 | 260 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-RA | 1458 | CG10814-RA | 44..1249 | 17..1222 | 6030 | 100 | Plus |
CG5321-RC | 1293 | CG5321-RC | 920..1244 | 876..1200 | 260 | 72 | Plus |
CG5321-RB | 1780 | CG5321-RB | 920..1244 | 876..1200 | 260 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13376796..13377688 | 909..17 | 4465 | 100 | Minus |
2R | 25286936 | 2R | 13376184..13376496 | 1222..910 | 1565 | 100 | Minus |
X | 23542271 | X | 14680592..14680882 | 910..1200 | 195 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:41:23 has no hits.
BO09559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:54 Download gff for
BO09559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 27..1242 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:47 Download gff for
BO09559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 49..1249 | 22..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:15 Download gff for
BO09559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 32..1232 | 22..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:23 Download gff for
BO09559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10814-RA | 49..1249 | 22..1224 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:23 Download gff for
BO09559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13376181..13376496 | 910..1224 | 99 | <- | Minus |
2R | 13376796..13377683 | 22..909 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:47 Download gff for
BO09559.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9263686..9264001 | 910..1224 | 99 | <- | Minus |
arm_2R | 9264301..9265188 | 22..909 | 100 | | Minus |
BO09559.pep Sequence
Translation from 16 to 1240
> BO09559.pep
MFQADRRDLPSQPLKLALPKEQDQSRLVQVPDPDRRDMQFPDIWLRDNCR
CEECYLPQTLSRLPQLWNHLDTSVRVLRQSVDVDQRVLCIEWSDGHTSQY
PFSWLRERDFSYANRQRYLRDFYRPEQKLWSGLDFEKIRQVFYYQELLDC
DSALQQWLQHLAVYGVAMVKEAPLDMDVLRRLSNRVGFMRRTTYGEEFSV
RAQPGGSNYAYLAAPLPLHTDMPYFEYLPGVTMLHTLEQSASPGGVNLLA
DAFYVAEVMRERYPEQFRVLCQTPVDWADIGSDGDLQFHNIWRAPVINLD
AEGRCVRINHSIPQRDSHFSVPVEQVRPWYEAMATFVGLAHEHSCRFKTT
PGDVLTFDNLRLVHGRTGYDDTDRNVRHILGAFVDWDIVYSRLRVLRNAK
ATASFLDH
BO09559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10814-PA | 402 | CG10814-PA | 1..402 | 1..402 | 2173 | 100 | Plus |
CG5321-PC | 413 | CG5321-PC | 32..411 | 23..404 | 1144 | 54.5 | Plus |
CG5321-PB | 413 | CG5321-PB | 32..411 | 23..404 | 1144 | 54.5 | Plus |
CG14630-PA | 406 | CG14630-PA | 30..405 | 28..400 | 959 | 46.4 | Plus |
CG4335-PA | 364 | CG4335-PA | 11..360 | 36..396 | 316 | 25.1 | Plus |