Clone Sequence Records
BO09563.3prime Sequence
931 bp (807 high quality bases) assembled on 2006-01-23
> BO09563.3prime
ATGGTCTAGAAAGCTTGCGTTGGGCTGCACCTCGCAGACGAAGTAGGTCT
CGAAGCTGCACGGCGAGTCGTTCCACTTGAGGCCCTTGCCATCGCGGTTC
CACAGCTCTAGGCAGTTCTCCTCCTCGCCGTTCTCGTACCGGAAATTGTT
GGGTTCGCCGGCGTTCCAGTTGGTGAATGTGATGGGTCTGCCGGTGGCCA
TCCAGAAGAAGTTGCCCTCGTCGGCCAGGTCCGTGCCGGAAATCCAGAAA
TGTTCGTGGCCCAGGCCAAAGTCACGTATGTGCTTCTCCAGTCTATCGTT
CTCTTCCTGTGATGAAATGCTGGCCAGATGCATGCCGTGGTATCGGCAAT
ATTGTGTGGCTTTGAACCAGTTTGCCTTGAAGAAGATGCCGAGGTAGTAG
CGCTTCTCCCCGAGCTTCAGCAGCGGCATCGTCCACTTGTTCGGCGTGTA
CTGCGACTCGTCCACGCAGTTGGGGCAATCATTATCGACTTCGTTCTCGC
TGGGATCGCGATGGAATATGTTCCCATAGTACTGGTCGTGCTGCTCCGAC
TCCACGCTCTGCAGCGACTCCTGCACGTCGTAATCGAAGTCCTCCTGGTT
GGCCAGCGGCTGCTGATCCCGCTCCTGGTCGTCGGCCTCCTCCTCCTCCT
CCTGTTCCTCCCGCAATCGCTTGCGATTGTAGCCCGACTGCCTCTTGGAG
GCGGCAGCTGCCAGGCGGTTCCTTTGAGCTCCACCTCCACTCCTCTTGAA
GTTTCCACCATCGCTGGCCGCGAATCCTCGAGGACGGGGTCGTGGCGATG
GCTTCGGCTTGGGCAGGATGTCCGCGATGGTGGGAATCTTTTGGTTGGCC
GTGCGATTGGGAAACACCGACGCTCCAAATAGTTGGCGAATATCTGCTGG
GGTATCTGATTCTGGCGGGCATCTCGCTGGG
BO09563.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9134-PB | 1131 | CG9134-RB | 281..1128 | 866..19 | 4240 | 100 | Minus |
CG9134-PA | 567 | CG9134-RA | 102..564 | 481..19 | 2315 | 100 | Minus |
CG9134-PC | 567 | CG9134-RC | 102..564 | 481..19 | 2315 | 100 | Minus |
CG9134-PB | 1131 | CG9134-RB | 225..280 | 921..866 | 255 | 98.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9134-RB | 2138 | CG9134-RB | 927..1841 | 931..19 | 4510 | 99.7 | Minus |
CG9134-RC | 957 | CG9134-RC | 198..660 | 481..19 | 2315 | 100 | Minus |
CG9134-RA | 1254 | CG9134-RA | 495..957 | 481..19 | 2315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1261580..1262033 | 931..480 | 2155 | 99.3 | Minus |
3L | 28110227 | 3L | 1273953..1274201 | 267..19 | 1245 | 100 | Minus |
3L | 28110227 | 3L | 1272963..1273074 | 377..266 | 560 | 100 | Minus |
3L | 28110227 | 3L | 1269070..1269175 | 480..375 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:48:45 has no hits.
BO09563.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:21 Download gff for
BO09563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-PB | 214..1131 | 18..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:38 Download gff for
BO09563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-PB | 214..1131 | 18..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:52 Download gff for
BO09563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 927..1841 | 19..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:26 Download gff for
BO09563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 927..1841 | 19..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:26 Download gff for
BO09563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1261580..1262033 | 480..931 | 99 | -> | Minus |
3L | 1269071..1269174 | 376..479 | 100 | -> | Minus |
3L | 1272965..1273073 | 267..375 | 100 | -> | Minus |
3L | 1273954..1274201 | 19..266 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:52 Download gff for
BO09563.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1261580..1262033 | 480..931 | 99 | -> | Minus |
arm_3L | 1269071..1269174 | 376..479 | 100 | -> | Minus |
arm_3L | 1272965..1273073 | 267..375 | 100 | -> | Minus |
arm_3L | 1273954..1274201 | 19..266 | 100 | | Minus |
BO09563.5prime Sequence
898 bp (857 high quality bases) assembled on 2006-01-23
> BO09563.5prime
GAAGTTATCAGTCGACATGATCCGCCCCACTCTTATCGTAGTGCTCATCT
CACTGGCCAGTGTCGATTCCGGCCACAACTCACCCGTGACCACCATCCCG
GTGGCCGAGCCCATCAGCCAGGTGCCCCACGGCTTCCAACTCGGCCAAAA
CAATCACATCAGCAGCAGCAGCAACATTAGCCGGAGTGGAGGCGGAAATG
GCCGTGATAAGAGAGGCGCCCAACTGGATCCCAGCGAGATTGCCCGCCAG
AATCAGATAACCCAGCAGATATTCGCCAACTATTTGGAGCGTCGGTTGTT
TCCCAATCGCACGGCCAACCAAAAGATTCCCACCATCGCGGACATCCTGC
CCAAGCCGAAGCCATCGCCACGACCCCGTCCTCGAGGATTCGCGGCCAGC
GATGGTGGAAACTTCAAGAGGAGTGGAGGTGGAGCTCAAAGGAACCGCCT
GGCAGCTGCCGCCTCCAAGAGGCAGTCGGGCTACAATCGCAAGCGATTGC
GGGAGGAACAGGAGGAGGAGGAGGAGGCCGACGACCAGGAGCGGGATCAG
CAGCCGCTGGCCAACCAGGAGGACTTCGATTACGACGTGCAGGAGTCGCT
GCAGAGCGTGGAGTCGGAGCAGCACGACCAGTACTATGGGAACATATTCC
ATCGCGATCCCAGCGAGAACGAAGTCGATAATGATTGCCCCAACTGCGTG
GACGAGTCGCAGTACACGCCGAACAAGTGGACGATGCCGCTGCTGAAGCT
CGGGGAGAAGCGCTACTACCTCGGCATCTTCTTCAAGGCAAACTGGTTCA
AAGCCACACAATATTGCCGATACCACGGCATGCATCTGGCCAGCATTTCA
TCACAGGAAGAGAACGATAGACTGGAGAAGCACATACGTGACTTTGGC
BO09563.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9134-PB | 1131 | CG9134-RB | 1..882 | 17..898 | 4385 | 99.8 | Plus |
CG9134-PA | 567 | CG9134-RA | 102..318 | 682..898 | 1085 | 100 | Plus |
CG9134-PC | 567 | CG9134-RC | 102..318 | 682..898 | 1085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9134-RB | 2138 | CG9134-RB | 713..1595 | 16..898 | 4400 | 99.9 | Plus |
CG9134-RC | 957 | CG9134-RC | 198..414 | 682..898 | 1085 | 100 | Plus |
CG9134-RA | 1254 | CG9134-RA | 495..711 | 682..898 | 1085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1261564..1262033 | 214..683 | 2350 | 100 | Plus |
3L | 28110227 | 3L | 1257161..1257361 | 16..216 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 1272963..1273074 | 786..897 | 560 | 100 | Plus |
3L | 28110227 | 3L | 1269070..1269175 | 683..788 | 530 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 20:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2470 | 112..176 | 135 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2373 | 142..181 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2610..2655 | 137..181 | 119 | 76.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2481..2514 | 142..175 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1575 | 141..181 | 115 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2374 | 149..185 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2372 | 142..186 | 108 | 71.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2483 | 142..186 | 108 | 71.1 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5608..5692 | 108..195 | 108 | 61.4 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7063..7147 | 108..195 | 108 | 61.4 | Plus |
BO09563.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:22 Download gff for
BO09563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-PB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:40 Download gff for
BO09563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-PB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:38 Download gff for
BO09563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 704..1595 | 7..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:31 Download gff for
BO09563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 704..1595 | 7..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:31 Download gff for
BO09563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1257152..1257360 | 7..215 | 98 | -> | Plus |
3L | 1261566..1262033 | 216..683 | 100 | -> | Plus |
3L | 1269071..1269174 | 684..787 | 100 | -> | Plus |
3L | 1272965..1273074 | 788..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:38 Download gff for
BO09563.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1257152..1257360 | 7..215 | 98 | -> | Plus |
arm_3L | 1261566..1262033 | 216..683 | 100 | -> | Plus |
arm_3L | 1269071..1269174 | 684..787 | 100 | -> | Plus |
arm_3L | 1272965..1273074 | 788..898 | 99 | | Plus |
BO09563.complete Sequence
1162 bp assembled on 2008-08-15
GenBank Submission: FJ631532
> BO09563.complete
GAAGTTATCAGTCGACATGATCCGCCCCACTCTTATCGTAGTGCTCATCT
CACTGGCCAGTGTCGATTCCGGCCACAACTCACCCGTGACCACCATCCCG
GTGGCCGAGCCCATCAGCCAGGTGCCCCACGGCTTCCAACTCGGCCAAAA
CAATCACATCAGCAGCAGCAGCAACATTAGCCGGAGTGGAGGCGGAAATG
GCCGTGATAAGAGAGGCGCCCAACTGGATCCCAGCGAGATTGCCCGCCAG
AATCAGATAACCCAGCAGATATTCGCCAACTATTTGGAGCGTCGGTTGTT
TCCCAATCGCACGGCCAACCAAAAGATTCCCACCATCGCGGACATCCTGC
CCAAGCCGAAGCCATCGCCACGACCCCGTCCTCGAGGATTCGCGGCCAGC
GATGGTGGAAACTTCAAGAGGAGTGGAGGTGGAGCTCAAAGGAACCGCCT
GGCAGCTGCCGCCTCCAAGAGGCAGTCGGGCTACAATCGCAAGCGATTGC
GGGAGGAACAGGAGGAGGAGGAGGAGGCCGACGACCAGGAGCGGGATCAG
CAGCCGCTGGCCAACCAGGAGGACTTCGATTACGACGTGCAGGAGTCGCT
GCAGAGCGTGGAGTCGGAGCAGCACGACCAGTACTATGGGAACATATTCC
ATCGCGATCCCAGCGAGAACGAAGTCGATAATGATTGCCCCAACTGCGTG
GACGAGTCGCAGTACACGCCGAACAAGTGGACGATGCCGCTGCTGAAGCT
CGGGGAGAAGCGCTACTACCTCGGCATCTTCTTCAAGGCAAACTGGTTCA
AAGCCACACAATATTGCCGATACCACGGCATGCATCTGGCCAGCATTTCA
TCACAGGAAGAGAACGATAGACTGGAGAAGCACATACGTGACTTTGGCCT
GGGCCACGAACATTTCTGGATTTCCGGCACGGACCTGGCCGACGAGGGCA
ACTTCTTCTGGATGGCCACCGGCAGACCCATCACATTCACCAACTGGAAC
GCCGGCGAACCCAACAATTTCCGGTACGAGAACGGCGAGGAGGAGAACTG
CCTAGAGCTGTGGAACCGCGATGGCAAGGGCCTCAAGTGGAACGACTCGC
CGTGCAGCTTCGAGACCTACTTCGTCTGCGAGGTGCAGCCCAACGCAAGC
TTTCTAGACCAT
BO09563.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9134-RB | 1131 | CG9134-PB | 1..1128 | 17..1144 | 5625 | 99.9 | Plus |
CG9134-RC | 567 | CG9134-PC | 102..564 | 682..1144 | 2315 | 100 | Plus |
CG9134-RA | 567 | CG9134-PA | 102..564 | 682..1144 | 2315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9134-RB | 2138 | CG9134-RB | 713..1841 | 16..1144 | 5630 | 99.9 | Plus |
CG9134-RC | 957 | CG9134-RC | 198..660 | 682..1144 | 2315 | 100 | Plus |
CG9134-RA | 1254 | CG9134-RA | 495..957 | 682..1144 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1261564..1262033 | 214..683 | 2350 | 100 | Plus |
3L | 28110227 | 3L | 1273953..1274201 | 896..1144 | 1245 | 100 | Plus |
3L | 28110227 | 3L | 1257161..1257361 | 16..216 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 1272963..1273074 | 786..897 | 560 | 100 | Plus |
3L | 28110227 | 3L | 1269070..1269175 | 683..788 | 530 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2470 | 112..176 | 135 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2373 | 142..181 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2610..2655 | 137..181 | 119 | 76.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2481..2514 | 142..175 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1575 | 141..181 | 115 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2374 | 149..185 | 113 | 78.4 | Plus |
BO09563.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:17 Download gff for
BO09563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 701..1838 | 7..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:09 Download gff for
BO09563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 714..1841 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:33 Download gff for
BO09563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 711..1838 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:30 Download gff for
BO09563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9134-RB | 714..1841 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:30 Download gff for
BO09563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1273954..1274201 | 897..1146 | 99 | | Plus |
3L | 1257162..1257360 | 17..215 | 99 | -> | Plus |
3L | 1261566..1262033 | 216..683 | 100 | -> | Plus |
3L | 1269071..1269174 | 684..787 | 100 | -> | Plus |
3L | 1272965..1273073 | 788..896 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:09 Download gff for
BO09563.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1257162..1257360 | 17..215 | 99 | -> | Plus |
arm_3L | 1261566..1262033 | 216..683 | 100 | -> | Plus |
arm_3L | 1269071..1269174 | 684..787 | 100 | -> | Plus |
arm_3L | 1272965..1273073 | 788..896 | 100 | -> | Plus |
arm_3L | 1273954..1274201 | 897..1146 | 99 | | Plus |
BO09563.pep Sequence
Translation from 16 to 1162
> BO09563.pep
MIRPTLIVVLISLASVDSGHNSPVTTIPVAEPISQVPHGFQLGQNNHISS
SSNISRSGGGNGRDKRGAQLDPSEIARQNQITQQIFANYLERRLFPNRTA
NQKIPTIADILPKPKPSPRPRPRGFAASDGGNFKRSGGGAQRNRLAAAAS
KRQSGYNRKRLREEQEEEEEADDQERDQQPLANQEDFDYDVQESLQSVES
EQHDQYYGNIFHRDPSENEVDNDCPNCVDESQYTPNKWTMPLLKLGEKRY
YLGIFFKANWFKATQYCRYHGMHLASISSQEENDRLEKHIRDFGLGHEHF
WISGTDLADEGNFFWMATGRPITFTNWNAGEPNNFRYENGEEENCLELWN
RDGKGLKWNDSPCSFETYFVCEVQPNASFLDH
BO09563.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9134-PB | 376 | CG9134-PB | 1..376 | 1..376 | 2040 | 100 | Plus |
CG9134-PC | 188 | CG9134-PC | 35..188 | 223..376 | 892 | 100 | Plus |
CG9134-PA | 188 | CG9134-PA | 35..188 | 223..376 | 892 | 100 | Plus |
CG12111-PB | 188 | CG12111-PB | 34..181 | 219..379 | 257 | 34.8 | Plus |
CG12111-PA | 188 | CG12111-PA | 34..181 | 219..379 | 257 | 34.8 | Plus |