Clone BO09563 Report

Search the DGRC for BO09563

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG9134-RB
Protein status:BO09563.pep: Imported from assembly
Sequenced Size:1162

Clone Sequence Records

BO09563.3prime Sequence

931 bp (807 high quality bases) assembled on 2006-01-23

> BO09563.3prime
ATGGTCTAGAAAGCTTGCGTTGGGCTGCACCTCGCAGACGAAGTAGGTCT
CGAAGCTGCACGGCGAGTCGTTCCACTTGAGGCCCTTGCCATCGCGGTTC
CACAGCTCTAGGCAGTTCTCCTCCTCGCCGTTCTCGTACCGGAAATTGTT
GGGTTCGCCGGCGTTCCAGTTGGTGAATGTGATGGGTCTGCCGGTGGCCA
TCCAGAAGAAGTTGCCCTCGTCGGCCAGGTCCGTGCCGGAAATCCAGAAA
TGTTCGTGGCCCAGGCCAAAGTCACGTATGTGCTTCTCCAGTCTATCGTT
CTCTTCCTGTGATGAAATGCTGGCCAGATGCATGCCGTGGTATCGGCAAT
ATTGTGTGGCTTTGAACCAGTTTGCCTTGAAGAAGATGCCGAGGTAGTAG
CGCTTCTCCCCGAGCTTCAGCAGCGGCATCGTCCACTTGTTCGGCGTGTA
CTGCGACTCGTCCACGCAGTTGGGGCAATCATTATCGACTTCGTTCTCGC
TGGGATCGCGATGGAATATGTTCCCATAGTACTGGTCGTGCTGCTCCGAC
TCCACGCTCTGCAGCGACTCCTGCACGTCGTAATCGAAGTCCTCCTGGTT
GGCCAGCGGCTGCTGATCCCGCTCCTGGTCGTCGGCCTCCTCCTCCTCCT
CCTGTTCCTCCCGCAATCGCTTGCGATTGTAGCCCGACTGCCTCTTGGAG
GCGGCAGCTGCCAGGCGGTTCCTTTGAGCTCCACCTCCACTCCTCTTGAA
GTTTCCACCATCGCTGGCCGCGAATCCTCGAGGACGGGGTCGTGGCGATG
GCTTCGGCTTGGGCAGGATGTCCGCGATGGTGGGAATCTTTTGGTTGGCC
GTGCGATTGGGAAACACCGACGCTCCAAATAGTTGGCGAATATCTGCTGG
GGTATCTGATTCTGGCGGGCATCTCGCTGGG

BO09563.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9134-PB 1131 CG9134-RB 281..1128 866..19 4240 100 Minus
CG9134-PA 567 CG9134-RA 102..564 481..19 2315 100 Minus
CG9134-PC 567 CG9134-RC 102..564 481..19 2315 100 Minus
CG9134-PB 1131 CG9134-RB 225..280 921..866 255 98.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9134-RB 2138 CG9134-RB 927..1841 931..19 4510 99.7 Minus
CG9134-RC 957 CG9134-RC 198..660 481..19 2315 100 Minus
CG9134-RA 1254 CG9134-RA 495..957 481..19 2315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1261580..1262033 931..480 2155 99.3 Minus
3L 28110227 3L 1273953..1274201 267..19 1245 100 Minus
3L 28110227 3L 1272963..1273074 377..266 560 100 Minus
3L 28110227 3L 1269070..1269175 480..375 530 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:48:45 has no hits.

BO09563.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:21 Download gff for BO09563.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-PB 214..1131 18..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:38 Download gff for BO09563.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-PB 214..1131 18..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:52 Download gff for BO09563.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 927..1841 19..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:26 Download gff for BO09563.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 927..1841 19..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:26 Download gff for BO09563.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1261580..1262033 480..931 99 -> Minus
3L 1269071..1269174 376..479 100 -> Minus
3L 1272965..1273073 267..375 100 -> Minus
3L 1273954..1274201 19..266 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:52 Download gff for BO09563.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1261580..1262033 480..931 99 -> Minus
arm_3L 1269071..1269174 376..479 100 -> Minus
arm_3L 1272965..1273073 267..375 100 -> Minus
arm_3L 1273954..1274201 19..266 100   Minus

BO09563.5prime Sequence

898 bp (857 high quality bases) assembled on 2006-01-23

> BO09563.5prime
GAAGTTATCAGTCGACATGATCCGCCCCACTCTTATCGTAGTGCTCATCT
CACTGGCCAGTGTCGATTCCGGCCACAACTCACCCGTGACCACCATCCCG
GTGGCCGAGCCCATCAGCCAGGTGCCCCACGGCTTCCAACTCGGCCAAAA
CAATCACATCAGCAGCAGCAGCAACATTAGCCGGAGTGGAGGCGGAAATG
GCCGTGATAAGAGAGGCGCCCAACTGGATCCCAGCGAGATTGCCCGCCAG
AATCAGATAACCCAGCAGATATTCGCCAACTATTTGGAGCGTCGGTTGTT
TCCCAATCGCACGGCCAACCAAAAGATTCCCACCATCGCGGACATCCTGC
CCAAGCCGAAGCCATCGCCACGACCCCGTCCTCGAGGATTCGCGGCCAGC
GATGGTGGAAACTTCAAGAGGAGTGGAGGTGGAGCTCAAAGGAACCGCCT
GGCAGCTGCCGCCTCCAAGAGGCAGTCGGGCTACAATCGCAAGCGATTGC
GGGAGGAACAGGAGGAGGAGGAGGAGGCCGACGACCAGGAGCGGGATCAG
CAGCCGCTGGCCAACCAGGAGGACTTCGATTACGACGTGCAGGAGTCGCT
GCAGAGCGTGGAGTCGGAGCAGCACGACCAGTACTATGGGAACATATTCC
ATCGCGATCCCAGCGAGAACGAAGTCGATAATGATTGCCCCAACTGCGTG
GACGAGTCGCAGTACACGCCGAACAAGTGGACGATGCCGCTGCTGAAGCT
CGGGGAGAAGCGCTACTACCTCGGCATCTTCTTCAAGGCAAACTGGTTCA
AAGCCACACAATATTGCCGATACCACGGCATGCATCTGGCCAGCATTTCA
TCACAGGAAGAGAACGATAGACTGGAGAAGCACATACGTGACTTTGGC

BO09563.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9134-PB 1131 CG9134-RB 1..882 17..898 4385 99.8 Plus
CG9134-PA 567 CG9134-RA 102..318 682..898 1085 100 Plus
CG9134-PC 567 CG9134-RC 102..318 682..898 1085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9134-RB 2138 CG9134-RB 713..1595 16..898 4400 99.9 Plus
CG9134-RC 957 CG9134-RC 198..414 682..898 1085 100 Plus
CG9134-RA 1254 CG9134-RA 495..711 682..898 1085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1261564..1262033 214..683 2350 100 Plus
3L 28110227 3L 1257161..1257361 16..216 990 99.5 Plus
3L 28110227 3L 1272963..1273074 786..897 560 100 Plus
3L 28110227 3L 1269070..1269175 683..788 530 100 Plus
Blast to na_te.dros performed 2015-02-12 20:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2470 112..176 135 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2373 142..181 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2610..2655 137..181 119 76.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2481..2514 142..175 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1575 141..181 115 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2374 149..185 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2372 142..186 108 71.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2483 142..186 108 71.1 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5608..5692 108..195 108 61.4 Plus
TART-C 11124 TART-C TARTC 11124bp 7063..7147 108..195 108 61.4 Plus

BO09563.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:22 Download gff for BO09563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-PB 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:40 Download gff for BO09563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-PB 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:38 Download gff for BO09563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 704..1595 7..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:45:31 Download gff for BO09563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 704..1595 7..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:45:31 Download gff for BO09563.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1257152..1257360 7..215 98 -> Plus
3L 1261566..1262033 216..683 100 -> Plus
3L 1269071..1269174 684..787 100 -> Plus
3L 1272965..1273074 788..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:38 Download gff for BO09563.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1257152..1257360 7..215 98 -> Plus
arm_3L 1261566..1262033 216..683 100 -> Plus
arm_3L 1269071..1269174 684..787 100 -> Plus
arm_3L 1272965..1273074 788..898 99   Plus

BO09563.complete Sequence

1162 bp assembled on 2008-08-15

GenBank Submission: FJ631532

> BO09563.complete
GAAGTTATCAGTCGACATGATCCGCCCCACTCTTATCGTAGTGCTCATCT
CACTGGCCAGTGTCGATTCCGGCCACAACTCACCCGTGACCACCATCCCG
GTGGCCGAGCCCATCAGCCAGGTGCCCCACGGCTTCCAACTCGGCCAAAA
CAATCACATCAGCAGCAGCAGCAACATTAGCCGGAGTGGAGGCGGAAATG
GCCGTGATAAGAGAGGCGCCCAACTGGATCCCAGCGAGATTGCCCGCCAG
AATCAGATAACCCAGCAGATATTCGCCAACTATTTGGAGCGTCGGTTGTT
TCCCAATCGCACGGCCAACCAAAAGATTCCCACCATCGCGGACATCCTGC
CCAAGCCGAAGCCATCGCCACGACCCCGTCCTCGAGGATTCGCGGCCAGC
GATGGTGGAAACTTCAAGAGGAGTGGAGGTGGAGCTCAAAGGAACCGCCT
GGCAGCTGCCGCCTCCAAGAGGCAGTCGGGCTACAATCGCAAGCGATTGC
GGGAGGAACAGGAGGAGGAGGAGGAGGCCGACGACCAGGAGCGGGATCAG
CAGCCGCTGGCCAACCAGGAGGACTTCGATTACGACGTGCAGGAGTCGCT
GCAGAGCGTGGAGTCGGAGCAGCACGACCAGTACTATGGGAACATATTCC
ATCGCGATCCCAGCGAGAACGAAGTCGATAATGATTGCCCCAACTGCGTG
GACGAGTCGCAGTACACGCCGAACAAGTGGACGATGCCGCTGCTGAAGCT
CGGGGAGAAGCGCTACTACCTCGGCATCTTCTTCAAGGCAAACTGGTTCA
AAGCCACACAATATTGCCGATACCACGGCATGCATCTGGCCAGCATTTCA
TCACAGGAAGAGAACGATAGACTGGAGAAGCACATACGTGACTTTGGCCT
GGGCCACGAACATTTCTGGATTTCCGGCACGGACCTGGCCGACGAGGGCA
ACTTCTTCTGGATGGCCACCGGCAGACCCATCACATTCACCAACTGGAAC
GCCGGCGAACCCAACAATTTCCGGTACGAGAACGGCGAGGAGGAGAACTG
CCTAGAGCTGTGGAACCGCGATGGCAAGGGCCTCAAGTGGAACGACTCGC
CGTGCAGCTTCGAGACCTACTTCGTCTGCGAGGTGCAGCCCAACGCAAGC
TTTCTAGACCAT

BO09563.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9134-RB 1131 CG9134-PB 1..1128 17..1144 5625 99.9 Plus
CG9134-RC 567 CG9134-PC 102..564 682..1144 2315 100 Plus
CG9134-RA 567 CG9134-PA 102..564 682..1144 2315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9134-RB 2138 CG9134-RB 713..1841 16..1144 5630 99.9 Plus
CG9134-RC 957 CG9134-RC 198..660 682..1144 2315 100 Plus
CG9134-RA 1254 CG9134-RA 495..957 682..1144 2315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1261564..1262033 214..683 2350 100 Plus
3L 28110227 3L 1273953..1274201 896..1144 1245 100 Plus
3L 28110227 3L 1257161..1257361 16..216 990 99.5 Plus
3L 28110227 3L 1272963..1273074 786..897 560 100 Plus
3L 28110227 3L 1269070..1269175 683..788 530 100 Plus
Blast to na_te.dros performed 2014-11-27 07:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2406..2470 112..176 135 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2373 142..181 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2610..2655 137..181 119 76.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2481..2514 142..175 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1575 141..181 115 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2374 149..185 113 78.4 Plus

BO09563.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:17 Download gff for BO09563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 701..1838 7..1144 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:09 Download gff for BO09563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 714..1841 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:33 Download gff for BO09563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 711..1838 17..1146 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:30 Download gff for BO09563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9134-RB 714..1841 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:30 Download gff for BO09563.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1273954..1274201 897..1146 99   Plus
3L 1257162..1257360 17..215 99 -> Plus
3L 1261566..1262033 216..683 100 -> Plus
3L 1269071..1269174 684..787 100 -> Plus
3L 1272965..1273073 788..896 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:09 Download gff for BO09563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1257162..1257360 17..215 99 -> Plus
arm_3L 1261566..1262033 216..683 100 -> Plus
arm_3L 1269071..1269174 684..787 100 -> Plus
arm_3L 1272965..1273073 788..896 100 -> Plus
arm_3L 1273954..1274201 897..1146 99   Plus

BO09563.pep Sequence

Translation from 16 to 1162

> BO09563.pep
MIRPTLIVVLISLASVDSGHNSPVTTIPVAEPISQVPHGFQLGQNNHISS
SSNISRSGGGNGRDKRGAQLDPSEIARQNQITQQIFANYLERRLFPNRTA
NQKIPTIADILPKPKPSPRPRPRGFAASDGGNFKRSGGGAQRNRLAAAAS
KRQSGYNRKRLREEQEEEEEADDQERDQQPLANQEDFDYDVQESLQSVES
EQHDQYYGNIFHRDPSENEVDNDCPNCVDESQYTPNKWTMPLLKLGEKRY
YLGIFFKANWFKATQYCRYHGMHLASISSQEENDRLEKHIRDFGLGHEHF
WISGTDLADEGNFFWMATGRPITFTNWNAGEPNNFRYENGEEENCLELWN
RDGKGLKWNDSPCSFETYFVCEVQPNASFLDH

BO09563.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9134-PB 376 CG9134-PB 1..376 1..376 2040 100 Plus
CG9134-PC 188 CG9134-PC 35..188 223..376 892 100 Plus
CG9134-PA 188 CG9134-PA 35..188 223..376 892 100 Plus
CG12111-PB 188 CG12111-PB 34..181 219..379 257 34.8 Plus
CG12111-PA 188 CG12111-PA 34..181 219..379 257 34.8 Plus