Clone Sequence Records
BO09565.3prime Sequence
817 bp (791 high quality bases) assembled on 2006-01-23
> BO09565.3prime
ATGGTCTAGAAAGCTTGCGAACTGACCACTCAGCTCGTCGTCAAAATCGG
AGGTGGGTGGCGTGTCCTTGACATCCGCCCGCACCGTGTACTCCTTCTCG
TTGACACTGTAGTAGATGTTGAAGTACCTGCCCGACTGAATTCTCATGGC
AAGGTAGCCACTCTGGCCGCGATCCTTGGCCGTCCGCTGGTAGATCACAT
GTCCGCTGCTCAGGATTACGCGCACCTCCTGCGAACCGTCCTCGTTCTTC
CGCGCATTCTGCCGCATGATCTGCACCAGCTGCGTCCTCAGTGGATTGGA
ACTGGGCTTCAGGCCCGGCAGCTGAACGAGCGGCTCACAGCGGCAGTTGA
GCTTCTGGGTGAGTGGGCATGTGGTCTGGGGATTGGGTGACGAGCCGAGC
AGTTGGCCCGGCACCGCGGCCACCGGCGCCACTGCACCCAGTCCCAGGTT
GCCCAGATTCAGGCCGCCCAGAGTGCCGAAGCCGCCGTTTAGCGAACCGA
GTCCCAGGCCGTTGATCAAATTGGGCAGGCCACCCACCCAGGTTCCGATA
AGTGGAAGATTCTGGCTAAACTGAGGCAGCCAGCCGGACTGCGGCTGCTG
GCTCTGGGCATTCGAACTGGAGGCCACAGGAGTCACCACCGTAATCGGCT
GCAATGGCTGCAGAGGCTGAAGTTGCTGCAGTGGCGGCAGTGGCTGCAGC
GGGGGATTCACATTAAGGCCATCGAAGAAAACGGGATAGTTGCCGCTGGA
ACCAGCCAGGCTGCTCTGGCCACCATTGGCGGTCAATTGGCGTTTGTCAC
GGCGTTCCAAGGACTCC
BO09565.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32631-PA | 939 | CG32631-RA | 138..936 | 817..19 | 3995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32631-RA | 1289 | CG32631-RA | 215..1013 | 817..19 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13556825..13557590 | 784..19 | 3830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:58:37 has no hits.
BO09565.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:25 Download gff for
BO09565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-PA | 138..939 | 15..817 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:44 Download gff for
BO09565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-PA | 138..939 | 15..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:31:11 Download gff for
BO09565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 215..1021 | 11..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:09 Download gff for
BO09565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 215..1021 | 11..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:09 Download gff for
BO09565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13556686..13556719 | 784..817 | 100 | -> | Minus |
X | 13556826..13557598 | 11..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:31:11 Download gff for
BO09565.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13450719..13450752 | 784..817 | 100 | -> | Minus |
arm_X | 13450859..13451631 | 11..783 | 99 | | Minus |
BO09565.5prime Sequence
839 bp (719 high quality bases) assembled on 2006-01-23
> BO09565.5prime
GAAGTTATCAGTCGACATGGCCAACATTCTAAGTTTTACCATCTTTATGG
CTGCCATTGCTATTGGACTGGCTTTAGCCACAACAACGACAGCAAGTACA
AGGACACCCATGCCCACTTCCACTGAAAAATCCATGGAAAAGGACGATCC
CATGGAGTCCTTGGAACGCCGTGACAAACGCCAATTGACCGCCAATGGTG
GCCAGAGCAGCCTGGCTGGTTCCAGCGGCAACTATCCCGTTTTCTTCGAT
GGCCTTAATGTGAATCCCCCGCTGCAGCCACTGCCGCCACTGCAGCAACT
TCAGCCTCTGCAGCCATTGCAGCCGATTACGGTGGTGACTCCTGTGGCCT
CCAGTTCGAATGCCCAGAGCCAGCAGCCGCAGTCCGGCTGGCTGCCTCAG
TTTAGCCAGAATCTTCCACTTATCGGAACCTGGGTGGGTGGCCTGCCCAA
TTTGATCAACGGCCTGGGACTCGGTTCGCTAAACGGCGGCTTCGGCACTC
TGGGCGGCCTGAATCTGGGCAACCTGGGACTGGGTGCAGTGGCGCCGGTG
GCCGCGGTGCCGGGCCAACTGCTCGGCTCGTCACCCAATCCCCAGACCAC
ATGCCCACTCACCCAGAAGCTCAACTGCCGCTGTGAGCCGCTCGTTCAGC
TGCCGGGCCTGAAGCCCAGTTCCAATCCACTGAGGACGCAGCTGGTGCAG
ATCATGCGGCAGAATGCGCGGAAGAACGAGGACGGTTCGCAGGAGGTGCG
CGTAATCCTGAGCAGCGGACATGTGATCTACCAGCGGACGGCCAAGGAAT
CGCGCCAGAGTGGCTACCTTTGCATGAAAAATCAGTCGG
BO09565.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32631-PA | 939 | CG32631-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32631-RA | 1289 | CG32631-RA | 76..900 | 15..839 | 4020 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13556825..13557477 | 187..839 | 3130 | 98.6 | Plus |
X | 23542271 | X | 13556547..13556719 | 15..187 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:41:09 has no hits.
BO09565.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:26 Download gff for
BO09565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:45 Download gff for
BO09565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:15:02 Download gff for
BO09565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 69..900 | 9..839 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:48:34 Download gff for
BO09565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 69..900 | 9..839 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:48:34 Download gff for
BO09565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13556540..13556719 | 9..187 | 97 | -> | Plus |
X | 13556826..13557477 | 188..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:15:02 Download gff for
BO09565.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13450573..13450752 | 9..187 | 97 | -> | Plus |
arm_X | 13450859..13451510 | 188..839 | 99 | | Plus |
BO09565.complete Sequence
970 bp (970 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631533
> BO09565.complete
GAAGTTATCAGTCGACATGGCCAACATTCTAAGTTTTACCATCTTTATGG
CTGCCATTGCTATTGGACTGGCTTTAGCCACAACAACGACAGCAAGTACA
AGGACACCCATGCCCACTTCCACTGAAAAATCCATGGAAAAGGACGATCC
CATGGAGTCCTTGGAACGCCGTGACAAACGCCAATTGACCGCCAATGGTG
GCCAGAGCAGCCTGGCTGGTTCCAGCGGCAACTATCCCGTTTTCTTCGAT
GGCCTTAATGTGAATCCCCCGCTGCAGCCACTGCCGCCACTGCAGCAACT
TCAGCCTCTGCAGCCATTGCAGCCGATTACGGTGGTGACTCCTGTGGCCT
CCAGTTCGAATGCCCAGAGCCAGCAGCCGCAGTCCGGCTGGCTGCCTCAG
TTTAGCCAGAATCTTCCACTTATCGGAACCTGGGTGGGTGGCCTGCCCAA
TTTGATCAACGGCCTGGGACTCGGTTCGCTAAACGGCGGCTTCGGCACTC
TGGGCGGCCTGAATCTGGGCAACCTGGGACTGGGTGCAGTGGCGCCGGTG
GCCGCGGTGCCGGGCCAACTGCTCGGCTCGTCACCCAATCCCCAGACCAC
ATGCCCACTCACCCAGAAGCTCAACTGCCGCTGTGAGCCGCTCGTTCAGC
TGCCGGGCCTGAAGCCCAGTTCCAATCCACTGAGGACGCAGCTGGTGCAG
ATCATGCGGCAGAATGCGCGGAAGAACGAGGACGGTTCGCAGGAGGTGCG
CGTAATCCTGAGCAGCGGACATGTGATCTACCAGCGGACGGCCAAGGATC
GCGGCCAGAGTGGCTACCTTGCCATGAGAATTCAGTCGGGCAGGTACTTC
AACATCTACTACAGTGTCAACGAGAAGGAGTACACGGTGCGGGCGGATGT
CAAGGACACGCCACCCACCTCCGATTTTGACGACGAGCTGAGTGGTCAGT
TCGCAAGCTTTCTAGACCAT
BO09565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32631-RA | 939 | CG32631-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32631-RA | 1289 | CG32631-RA | 76..1013 | 15..952 | 4690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13556825..13557590 | 187..952 | 3830 | 100 | Plus |
X | 23542271 | X | 13556547..13556719 | 15..187 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:21 has no hits.
BO09565.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:57 Download gff for
BO09565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 1..939 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:19 Download gff for
BO09565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 69..1021 | 9..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:50 Download gff for
BO09565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 78..1013 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:57 Download gff for
BO09565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 69..1021 | 9..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:49 Download gff for
BO09565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32631-RA | 78..1013 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:49 Download gff for
BO09565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13556549..13556719 | 17..187 | 100 | -> | Plus |
X | 13556826..13557590 | 188..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:50 Download gff for
BO09565.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13450582..13450752 | 17..187 | 100 | -> | Plus |
arm_X | 13450859..13451623 | 188..954 | 99 | | Plus |
BO09565.pep Sequence
Translation from 16 to 970
> BO09565.pep
MANILSFTIFMAAIAIGLALATTTTASTRTPMPTSTEKSMEKDDPMESLE
RRDKRQLTANGGQSSLAGSSGNYPVFFDGLNVNPPLQPLPPLQQLQPLQP
LQPITVVTPVASSSNAQSQQPQSGWLPQFSQNLPLIGTWVGGLPNLINGL
GLGSLNGGFGTLGGLNLGNLGLGAVAPVAAVPGQLLGSSPNPQTTCPLTQ
KLNCRCEPLVQLPGLKPSSNPLRTQLVQIMRQNARKNEDGSQEVRVILSS
GHVIYQRTAKDRGQSGYLAMRIQSGRYFNIYYSVNEKEYTVRADVKDTPP
TSDFDDELSGQFASFLDH
BO09565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32631-PA | 312 | CG32631-PA | 1..312 | 1..312 | 1612 | 100 | Plus |