Clone Sequence Records
BO09568.3prime Sequence
927 bp (832 high quality bases) assembled on 2006-01-23
> BO09568.3prime
ATGGTCTAGAAAGCTTGCTGAACTCATTGTCCTGGCAATAGCCAGGATAA
TCAGCGGCATTGCTAGCCAACCCCCAAGGATTCTCAGTCCGGGGGATCCG
CTTCTATAGCCGCAGGCCAGCTGCTCCTCTTCGGTGCCAACACCAAATGT
ACACTCATTGTCGTAGTAATTTCCATAGATGCCAAAGGTCAACAGATTGC
TCAGCTCCTGGGTTTCCTTCAGGGCAAAGCGAACTTCTTGGACATAGCTA
TCTTCCGTGGGCTTTCGCTGAGACCATTCAAACTGGCTCGGTTCCAGGGG
CAGCAAACTATCTTGCAGGGTGTCCGGAAATAGCAGAAACTCCCGTGACT
CTGGATAGGTAACACCGATCGCCAGGCGCGTGAAAGTCACTCGCGACTGC
TGAAGCTCACCCTCGGTGGGCAATAGTTTGCCACAATCATCGATGGAGTC
CCCAGAACAGGTGAACAGCGCACAATTACGTATGTAATTGGCATCCACAT
TGTTCTCGTTGCGCCAGCCATCGTAGGTTCCCAATCGATAGCTATAGTAG
CTACCATTCTCCGTCGCTGTACCCAAGGATCTCCACGCTATGTCGAAGTT
ACAGCAAAAGCTGCCCTGGCAGATGGTTCTATTGATAGCACCACTAGTTC
CCTCGTCCAACTTGAGCAACTCAGACTCATAGTTCTCCACGTAATCGCGC
TTCATGTAGAAACTCGAGCTTGAGGCCACCTGACGGGTTTGGATCTCCTG
TAGACTCCTCTTCGCACGTTTCTTCAGGGATCTACTGCGAGTATACTTGG
GCACCTGGGCCACATAGATGGCCCTCTCGCCGGAGTCCTGGCGCATGACA
CTGGGCAAAGTGCCGGAACGTCCGTGATAGATGCCCGATCCACTATTGCC
AATGGAGGGACGACTGGCTCCAGACGC
BO09568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32754-PA | 1677 | vanin-like-RA | 766..1674 | 927..19 | 4520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vanin-like-RA | 1864 | CG32754-RA | 783..1691 | 927..19 | 4530 | 99.9 | Minus |
CG32751-RB | 1758 | CG32751-RB | 1106..1597 | 611..105 | 240 | 71 | Minus |
CG32751-RA | 1603 | CG32751-RA | 1082..1573 | 611..105 | 240 | 71 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6200653..6201332 | 248..927 | 3385 | 99.9 | Plus |
X | 23542271 | X | 6200361..6200592 | 19..250 | 1160 | 100 | Plus |
X | 23542271 | X | 6196741..6196828 | 105..192 | 215 | 83 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:42:53 has no hits.
BO09568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:30 Download gff for
BO09568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32754-PA | 766..1677 | 15..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:51 Download gff for
BO09568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32754-PA | 766..1677 | 15..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:37 Download gff for
BO09568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 783..1695 | 14..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:22 Download gff for
BO09568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 783..1695 | 14..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:22 Download gff for
BO09568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6200357..6200589 | 14..247 | 99 | <- | Plus |
X | 6200653..6201332 | 248..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:37 Download gff for
BO09568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6094390..6094622 | 14..247 | 99 | <- | Plus |
arm_X | 6094686..6095365 | 248..927 | 99 | | Plus |
BO09568.5prime Sequence
909 bp (788 high quality bases) assembled on 2006-01-23
> BO09568.5prime
GAAGTTATCAGTCGACATGTCGAATACCTGGTGGTGGCTTTCAGTAGTGT
TACTAATCTTAGGGCTAATGCCTGGCATGAGTCAGCAGGCGGCCCTGGCC
GAATCGGATTACTATACGGCCGGAGTGGTGGAGTTCAAACAGTCGATCTT
AAGTCTATCGGCCTGGTCGGATTCCCTTGCTGGCTATGTGGAGATCATAA
ACTCTGAGAACGCCAGTGCCACCGACATCATTGTGTTTCCCGAGAGCACA
CTGAACTCCGCGGGTTCCACGACCTTTGTGCCCAATCCCGAGGATCAGAT
AAACCCGTGTTTGAGTGACCCCAATGCCACCTACTATGAGGAGTTTCTGG
TGACCCTGTCGTGCGCGGCCCGCAATGCCAGTAAATACATTGTGATCAAT
CTGACCGAGAAGCAAAAGTGCGAGGATATTCCCGAGGATACGAGGCCATG
TGCATCTAACGGACTGAATGTTTTCAACACCAATGTAGTGTTCGATCGTC
AGGGAGTCGTGGTGTCCAGGTACCGAAAGGTTCATCTCTATGGTGAAGCA
AAGAACAGCACTTTTCTGCCCGAGCTGATCACCTTCGAGACAGACTTTGG
GGTCACCTTCGGTCATTTCATCTGCTTCGACATCCTGTTCTACACTCCCG
CCCATCAACTCATCGTGGAGCAGGGTATTACGGACTTCGTGTATCCGGCC
ATGTGGTTCTCCCAACTGCCCTTCCTCACGGCTGTTCAGACGCAACAAGG
TTGGGCCTATGCCAACGATGTGAATCTCCTGGCGTCTGGAGCCAGTCGTC
CCTCCATTGGCAATAGTGGATCGGGCATCTATCACGGACGTTCCGGCACT
TTGACCAGTGTCATGCGCCAGGACTCCGGCGAGAGGGCCATCTATGTGGC
CCAGGTGCC
BO09568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32754-PA | 1677 | vanin-like-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
CG32751-PA | 1554 | CG32751-RA | 196..518 | 224..546 | 1465 | 98.1 | Plus |
CG32751-PA | 1554 | CG32751-RA | 523..710 | 551..738 | 765 | 96.2 | Plus |
CG3599-PA | 1662 | CG3599-RA | 564..608 | 589..633 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vanin-like-RA | 1864 | CG32754-RA | 14..910 | 13..909 | 4470 | 99.9 | Plus |
CG32751-RA | 1603 | CG32751-RA | 187..914 | 179..906 | 2605 | 90.5 | Plus |
CG32751-RB | 1758 | CG32751-RB | 187..938 | 179..906 | 2360 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6201764..6202409 | 731..86 | 3230 | 100 | Minus |
X | 23542271 | X | 6197862..6198412 | 729..179 | 2350 | 95.1 | Minus |
X | 23542271 | X | 6201205..6201387 | 909..727 | 900 | 99.5 | Minus |
X | 23542271 | X | 6202470..6202546 | 89..13 | 370 | 98.7 | Minus |
X | 23542271 | X | 6197453..6197610 | 906..749 | 265 | 77.8 | Minus |
X | 23542271 | X | 6218525..6218578 | 642..589 | 195 | 90.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:45:00 has no hits.
BO09568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:31 Download gff for
BO09568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32754-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:53 Download gff for
BO09568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32754-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:16:19 Download gff for
BO09568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 10..910 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:49 Download gff for
BO09568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 10..910 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:49 Download gff for
BO09568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6201205..6201382 | 732..909 | 100 | <- | Minus |
X | 6201764..6202406 | 89..731 | 100 | <- | Minus |
X | 6202471..6202550 | 9..88 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:16:19 Download gff for
BO09568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6095238..6095415 | 732..909 | 100 | <- | Minus |
arm_X | 6095797..6096439 | 89..731 | 100 | <- | Minus |
arm_X | 6096504..6096583 | 9..88 | 96 | | Minus |
BO09568.complete Sequence
1708 bp (1708 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631534
> BO09568.complete
GAAGTTATCAGTCGACATGTCGAATACCTGGTGGTGGCTTTCAGTAGTGT
TACTAATCTTAGGGCTAATGCCTGGCATGAGTCAGCAGGCGGCCCTGGCC
GAATCGGATTACTATACGGCCGGAGTGGTGGAGTTCAAACAGTCGATCTT
AAGTCTATCGGCCTGGTCGGATTCCCTTGCTGGCTATGTGGAGATCATAA
ACTCTGAGAACGCCAGTGCCACCGACATCATTGTGTTTCCCGAGAGCACA
CTGAACTCCGCGGGTTCCACGACCTTTGTGCCCAATCCCGAGGATCAGAT
AAACCCGTGTTTGAGTGACCCCAATGCCACCTACTATGAGGAGTTTCTGG
TGACCCTGTCGTGCGCGGCCCGCAATGCCAGTAAATACATTGTGATCAAT
CTGACCGAGAAGCAAAAGTGCGAGGATATTCCCGAGGATACGAGGCCATG
TGCATCTAACGGACTGAATGTTTTCAACACCAATGTAGTGTTCGATCGTC
AGGGAGTCGTGGTGTCCAGGTACCGAAAGGTTCATCTCTATGGTGAAGCA
AAGAACAGCACTTTTCTGCCCGAGCTGATCACCTTCGAGACAGACTTTGG
GGTCACCTTCGGTCATTTCATCTGCTTCGACATCCTGTTCTACACTCCCG
CCCATCAACTCATCGTGGAGCAGGGTATTACGGACTTCGTGTATCCGGCC
ATGTGGTTCTCCCAACTGCCCTTCCTCACGGCTGTTCAGACGCAACAAGG
TTGGGCCTATGCCAACGATGTGAATCTCCTGGCGTCTGGAGCCAGTCGTC
CCTCCATTGGCAATAGTGGATCGGGCATCTATCACGGACGTTCCGGCACT
TTGACCAGTGTCATGCGCCAGGACTCCGGCGAGAGGGCCATCTATGTGGC
CCAGGTGCCCAAGTATACTCGCAGTAGATCCCTGAAGAAACGTGCGAAGA
GGAGTCTACAGGAGATCCAAACCCGTCAGGTGGCCTCAAGCTCGAGTTTC
TACATGAAGCGCGATTACGTGGAGAACTATGAGTCTGAGTTGCTCAAGTT
GGACGAGGGAACTAGTGGTGCTATCAATAGAACCATCTGCCAGGGCAGCT
TTTGCTGTAACTTCGACATAGCGTGGAGATCCTTGGGTACAGCGACGGAG
AATGGTAGCTACTATAGCTATCGATTGGGAACCTACGATGGCTGGCGCAA
CGAGAACAATGTGGATGCCAATTACATACGTAATTGTGCGCTGTTCACCT
GTTCTGGGGACTCCATCGATGATTGTGGCAAACTATTGCCCACCGAGGGT
GAGCTTCAGCAGTCGCGAGTGACTTTCACGCGCCTGGCGATCGGTGTTAC
CTATCCAGAGTCACGGGAGTTTCTGCTATTTCCGGACACCCTGCAAGATA
GTTTGCTGCCCCTGGAACCGAGCCAGTTTGAATGGTCTCAGCGAAAGCCC
ACGGAAGATAGCTATGTCCAAGAAGTTCGCTTTGCCCTGAAGGAAACCCA
GGAGCTGAGCAATCTGTTGACCTTTGGCATCTATGGAAATTACTACGACA
ATGAGTGTACATTTGGTGTTGGCACCGAAGAGGAGCAGCTGGCCTGCGGC
TATAGAAGCGGATCCCCCGGACTGAGAATCCTTGGGGGTTGGCTAGCAAT
GCCGCTGATTATCCTGGCTATTGCCAGGACAATGAGTTCAGCAAGCTTTC
TAGACCAT
BO09568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vanin-like-RA | 1677 | CG32754-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
CG32751-RA | 1554 | CG32751-PA | 151..884 | 179..912 | 2620 | 90.5 | Plus |
CG32751-RB | 1578 | CG32751-PB | 151..701 | 179..729 | 2350 | 95.1 | Plus |
CG32751-RA | 1554 | CG32751-PA | 1450..1537 | 1517..1604 | 215 | 83 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vanin-like-RA | 1864 | CG32754-RA | 14..1691 | 13..1690 | 8375 | 99.9 | Plus |
CG32751-RA | 1603 | CG32751-RA | 187..920 | 179..912 | 2620 | 90.5 | Plus |
CG32751-RB | 1758 | CG32751-RB | 187..737 | 179..729 | 2350 | 95.1 | Plus |
CG32751-RA | 1603 | CG32751-RA | 1486..1573 | 1517..1604 | 215 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6200653..6201387 | 1461..727 | 3660 | 99.9 | Minus |
X | 23542271 | X | 6201764..6202409 | 731..86 | 3230 | 100 | Minus |
X | 23542271 | X | 6197862..6198412 | 729..179 | 2350 | 95.1 | Minus |
X | 23542271 | X | 6200361..6200592 | 1690..1459 | 1160 | 100 | Minus |
X | 23542271 | X | 6202470..6202546 | 89..13 | 370 | 98.7 | Minus |
X | 23542271 | X | 6197447..6197610 | 912..749 | 280 | 78 | Minus |
X | 23542271 | X | 6196741..6196828 | 1604..1517 | 215 | 83 | Minus |
X | 23542271 | X | 6218525..6218578 | 642..589 | 195 | 90.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:43:43 has no hits.
BO09568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:59 Download gff for
BO09568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 1..1677 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:22 Download gff for
BO09568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 10..1695 | 9..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:40:45 Download gff for
BO09568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 18..1691 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:00 Download gff for
BO09568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 10..1695 | 9..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:19 Download gff for
BO09568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vanin-like-RA | 18..1691 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:19 Download gff for
BO09568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6200359..6200589 | 1462..1692 | 99 | <- | Minus |
X | 6200653..6201382 | 732..1461 | 100 | <- | Minus |
X | 6201764..6202406 | 89..731 | 100 | <- | Minus |
X | 6202471..6202542 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:40:45 Download gff for
BO09568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6094392..6094622 | 1462..1692 | 99 | <- | Minus |
arm_X | 6094686..6095415 | 732..1461 | 100 | <- | Minus |
arm_X | 6095797..6096439 | 89..731 | 100 | <- | Minus |
arm_X | 6096504..6096575 | 17..88 | 100 | | Minus |
BO09568.pep Sequence
Translation from 16 to 1708
> BO09568.pep
MSNTWWWLSVVLLILGLMPGMSQQAALAESDYYTAGVVEFKQSILSLSAW
SDSLAGYVEIINSENASATDIIVFPESTLNSAGSTTFVPNPEDQINPCLS
DPNATYYEEFLVTLSCAARNASKYIVINLTEKQKCEDIPEDTRPCASNGL
NVFNTNVVFDRQGVVVSRYRKVHLYGEAKNSTFLPELITFETDFGVTFGH
FICFDILFYTPAHQLIVEQGITDFVYPAMWFSQLPFLTAVQTQQGWAYAN
DVNLLASGASRPSIGNSGSGIYHGRSGTLTSVMRQDSGERAIYVAQVPKY
TRSRSLKKRAKRSLQEIQTRQVASSSSFYMKRDYVENYESELLKLDEGTS
GAINRTICQGSFCCNFDIAWRSLGTATENGSYYSYRLGTYDGWRNENNVD
ANYIRNCALFTCSGDSIDDCGKLLPTEGELQQSRVTFTRLAIGVTYPESR
EFLLFPDTLQDSLLPLEPSQFEWSQRKPTEDSYVQEVRFALKETQELSNL
LTFGIYGNYYDNECTFGVGTEEEQLACGYRSGSPGLRILGGWLAMPLIIL
AIARTMSSASFLDH
BO09568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vanin-like-PA | 558 | CG32754-PA | 1..558 | 1..558 | 2927 | 100 | Plus |
CG32751-PA | 517 | CG32751-PA | 1..514 | 1..531 | 2071 | 73.8 | Plus |
CG32751-PB | 525 | CG32751-PB | 1..522 | 1..531 | 2052 | 72.7 | Plus |
CG32750-PA | 523 | CG32750-PA | 25..502 | 29..519 | 832 | 40.7 | Plus |
Btd-PA | 553 | CG3599-PA | 4..508 | 8..510 | 830 | 39.6 | Plus |