Clone BO09568 Report

Search the DGRC for BO09568

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptvanin-like-RA
Protein status:BO09568.pep: validated full length
Sequenced Size:1708

Clone Sequence Records

BO09568.3prime Sequence

927 bp (832 high quality bases) assembled on 2006-01-23

> BO09568.3prime
ATGGTCTAGAAAGCTTGCTGAACTCATTGTCCTGGCAATAGCCAGGATAA
TCAGCGGCATTGCTAGCCAACCCCCAAGGATTCTCAGTCCGGGGGATCCG
CTTCTATAGCCGCAGGCCAGCTGCTCCTCTTCGGTGCCAACACCAAATGT
ACACTCATTGTCGTAGTAATTTCCATAGATGCCAAAGGTCAACAGATTGC
TCAGCTCCTGGGTTTCCTTCAGGGCAAAGCGAACTTCTTGGACATAGCTA
TCTTCCGTGGGCTTTCGCTGAGACCATTCAAACTGGCTCGGTTCCAGGGG
CAGCAAACTATCTTGCAGGGTGTCCGGAAATAGCAGAAACTCCCGTGACT
CTGGATAGGTAACACCGATCGCCAGGCGCGTGAAAGTCACTCGCGACTGC
TGAAGCTCACCCTCGGTGGGCAATAGTTTGCCACAATCATCGATGGAGTC
CCCAGAACAGGTGAACAGCGCACAATTACGTATGTAATTGGCATCCACAT
TGTTCTCGTTGCGCCAGCCATCGTAGGTTCCCAATCGATAGCTATAGTAG
CTACCATTCTCCGTCGCTGTACCCAAGGATCTCCACGCTATGTCGAAGTT
ACAGCAAAAGCTGCCCTGGCAGATGGTTCTATTGATAGCACCACTAGTTC
CCTCGTCCAACTTGAGCAACTCAGACTCATAGTTCTCCACGTAATCGCGC
TTCATGTAGAAACTCGAGCTTGAGGCCACCTGACGGGTTTGGATCTCCTG
TAGACTCCTCTTCGCACGTTTCTTCAGGGATCTACTGCGAGTATACTTGG
GCACCTGGGCCACATAGATGGCCCTCTCGCCGGAGTCCTGGCGCATGACA
CTGGGCAAAGTGCCGGAACGTCCGTGATAGATGCCCGATCCACTATTGCC
AATGGAGGGACGACTGGCTCCAGACGC

BO09568.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32754-PA 1677 vanin-like-RA 766..1674 927..19 4520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
vanin-like-RA 1864 CG32754-RA 783..1691 927..19 4530 99.9 Minus
CG32751-RB 1758 CG32751-RB 1106..1597 611..105 240 71 Minus
CG32751-RA 1603 CG32751-RA 1082..1573 611..105 240 71 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6200653..6201332 248..927 3385 99.9 Plus
X 23542271 X 6200361..6200592 19..250 1160 100 Plus
X 23542271 X 6196741..6196828 105..192 215 83 Plus
Blast to na_te.dros performed on 2015-02-01 06:42:53 has no hits.

BO09568.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:30 Download gff for BO09568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32754-PA 766..1677 15..927 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:51 Download gff for BO09568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32754-PA 766..1677 15..927 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:37 Download gff for BO09568.3prime
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 783..1695 14..927 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:22 Download gff for BO09568.3prime
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 783..1695 14..927 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:22 Download gff for BO09568.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6200357..6200589 14..247 99 <- Plus
X 6200653..6201332 248..927 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:37 Download gff for BO09568.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6094390..6094622 14..247 99 <- Plus
arm_X 6094686..6095365 248..927 99   Plus

BO09568.5prime Sequence

909 bp (788 high quality bases) assembled on 2006-01-23

> BO09568.5prime
GAAGTTATCAGTCGACATGTCGAATACCTGGTGGTGGCTTTCAGTAGTGT
TACTAATCTTAGGGCTAATGCCTGGCATGAGTCAGCAGGCGGCCCTGGCC
GAATCGGATTACTATACGGCCGGAGTGGTGGAGTTCAAACAGTCGATCTT
AAGTCTATCGGCCTGGTCGGATTCCCTTGCTGGCTATGTGGAGATCATAA
ACTCTGAGAACGCCAGTGCCACCGACATCATTGTGTTTCCCGAGAGCACA
CTGAACTCCGCGGGTTCCACGACCTTTGTGCCCAATCCCGAGGATCAGAT
AAACCCGTGTTTGAGTGACCCCAATGCCACCTACTATGAGGAGTTTCTGG
TGACCCTGTCGTGCGCGGCCCGCAATGCCAGTAAATACATTGTGATCAAT
CTGACCGAGAAGCAAAAGTGCGAGGATATTCCCGAGGATACGAGGCCATG
TGCATCTAACGGACTGAATGTTTTCAACACCAATGTAGTGTTCGATCGTC
AGGGAGTCGTGGTGTCCAGGTACCGAAAGGTTCATCTCTATGGTGAAGCA
AAGAACAGCACTTTTCTGCCCGAGCTGATCACCTTCGAGACAGACTTTGG
GGTCACCTTCGGTCATTTCATCTGCTTCGACATCCTGTTCTACACTCCCG
CCCATCAACTCATCGTGGAGCAGGGTATTACGGACTTCGTGTATCCGGCC
ATGTGGTTCTCCCAACTGCCCTTCCTCACGGCTGTTCAGACGCAACAAGG
TTGGGCCTATGCCAACGATGTGAATCTCCTGGCGTCTGGAGCCAGTCGTC
CCTCCATTGGCAATAGTGGATCGGGCATCTATCACGGACGTTCCGGCACT
TTGACCAGTGTCATGCGCCAGGACTCCGGCGAGAGGGCCATCTATGTGGC
CCAGGTGCC

BO09568.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32754-PA 1677 vanin-like-RA 1..893 17..909 4465 100 Plus
CG32751-PA 1554 CG32751-RA 196..518 224..546 1465 98.1 Plus
CG32751-PA 1554 CG32751-RA 523..710 551..738 765 96.2 Plus
CG3599-PA 1662 CG3599-RA 564..608 589..633 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
vanin-like-RA 1864 CG32754-RA 14..910 13..909 4470 99.9 Plus
CG32751-RA 1603 CG32751-RA 187..914 179..906 2605 90.5 Plus
CG32751-RB 1758 CG32751-RB 187..938 179..906 2360 87.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6201764..6202409 731..86 3230 100 Minus
X 23542271 X 6197862..6198412 729..179 2350 95.1 Minus
X 23542271 X 6201205..6201387 909..727 900 99.5 Minus
X 23542271 X 6202470..6202546 89..13 370 98.7 Minus
X 23542271 X 6197453..6197610 906..749 265 77.8 Minus
X 23542271 X 6218525..6218578 642..589 195 90.7 Minus
Blast to na_te.dros performed on 2015-02-13 02:45:00 has no hits.

BO09568.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:31 Download gff for BO09568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32754-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:53 Download gff for BO09568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32754-PA 1..893 17..909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:16:19 Download gff for BO09568.5prime
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 10..910 9..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:49 Download gff for BO09568.5prime
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 10..910 9..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:49 Download gff for BO09568.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6201205..6201382 732..909 100 <- Minus
X 6201764..6202406 89..731 100 <- Minus
X 6202471..6202550 9..88 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:16:19 Download gff for BO09568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6095238..6095415 732..909 100 <- Minus
arm_X 6095797..6096439 89..731 100 <- Minus
arm_X 6096504..6096583 9..88 96   Minus

BO09568.complete Sequence

1708 bp (1708 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631534

> BO09568.complete
GAAGTTATCAGTCGACATGTCGAATACCTGGTGGTGGCTTTCAGTAGTGT
TACTAATCTTAGGGCTAATGCCTGGCATGAGTCAGCAGGCGGCCCTGGCC
GAATCGGATTACTATACGGCCGGAGTGGTGGAGTTCAAACAGTCGATCTT
AAGTCTATCGGCCTGGTCGGATTCCCTTGCTGGCTATGTGGAGATCATAA
ACTCTGAGAACGCCAGTGCCACCGACATCATTGTGTTTCCCGAGAGCACA
CTGAACTCCGCGGGTTCCACGACCTTTGTGCCCAATCCCGAGGATCAGAT
AAACCCGTGTTTGAGTGACCCCAATGCCACCTACTATGAGGAGTTTCTGG
TGACCCTGTCGTGCGCGGCCCGCAATGCCAGTAAATACATTGTGATCAAT
CTGACCGAGAAGCAAAAGTGCGAGGATATTCCCGAGGATACGAGGCCATG
TGCATCTAACGGACTGAATGTTTTCAACACCAATGTAGTGTTCGATCGTC
AGGGAGTCGTGGTGTCCAGGTACCGAAAGGTTCATCTCTATGGTGAAGCA
AAGAACAGCACTTTTCTGCCCGAGCTGATCACCTTCGAGACAGACTTTGG
GGTCACCTTCGGTCATTTCATCTGCTTCGACATCCTGTTCTACACTCCCG
CCCATCAACTCATCGTGGAGCAGGGTATTACGGACTTCGTGTATCCGGCC
ATGTGGTTCTCCCAACTGCCCTTCCTCACGGCTGTTCAGACGCAACAAGG
TTGGGCCTATGCCAACGATGTGAATCTCCTGGCGTCTGGAGCCAGTCGTC
CCTCCATTGGCAATAGTGGATCGGGCATCTATCACGGACGTTCCGGCACT
TTGACCAGTGTCATGCGCCAGGACTCCGGCGAGAGGGCCATCTATGTGGC
CCAGGTGCCCAAGTATACTCGCAGTAGATCCCTGAAGAAACGTGCGAAGA
GGAGTCTACAGGAGATCCAAACCCGTCAGGTGGCCTCAAGCTCGAGTTTC
TACATGAAGCGCGATTACGTGGAGAACTATGAGTCTGAGTTGCTCAAGTT
GGACGAGGGAACTAGTGGTGCTATCAATAGAACCATCTGCCAGGGCAGCT
TTTGCTGTAACTTCGACATAGCGTGGAGATCCTTGGGTACAGCGACGGAG
AATGGTAGCTACTATAGCTATCGATTGGGAACCTACGATGGCTGGCGCAA
CGAGAACAATGTGGATGCCAATTACATACGTAATTGTGCGCTGTTCACCT
GTTCTGGGGACTCCATCGATGATTGTGGCAAACTATTGCCCACCGAGGGT
GAGCTTCAGCAGTCGCGAGTGACTTTCACGCGCCTGGCGATCGGTGTTAC
CTATCCAGAGTCACGGGAGTTTCTGCTATTTCCGGACACCCTGCAAGATA
GTTTGCTGCCCCTGGAACCGAGCCAGTTTGAATGGTCTCAGCGAAAGCCC
ACGGAAGATAGCTATGTCCAAGAAGTTCGCTTTGCCCTGAAGGAAACCCA
GGAGCTGAGCAATCTGTTGACCTTTGGCATCTATGGAAATTACTACGACA
ATGAGTGTACATTTGGTGTTGGCACCGAAGAGGAGCAGCTGGCCTGCGGC
TATAGAAGCGGATCCCCCGGACTGAGAATCCTTGGGGGTTGGCTAGCAAT
GCCGCTGATTATCCTGGCTATTGCCAGGACAATGAGTTCAGCAAGCTTTC
TAGACCAT

BO09568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
vanin-like-RA 1677 CG32754-PA 1..1674 17..1690 8370 100 Plus
CG32751-RA 1554 CG32751-PA 151..884 179..912 2620 90.5 Plus
CG32751-RB 1578 CG32751-PB 151..701 179..729 2350 95.1 Plus
CG32751-RA 1554 CG32751-PA 1450..1537 1517..1604 215 83 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
vanin-like-RA 1864 CG32754-RA 14..1691 13..1690 8375 99.9 Plus
CG32751-RA 1603 CG32751-RA 187..920 179..912 2620 90.5 Plus
CG32751-RB 1758 CG32751-RB 187..737 179..729 2350 95.1 Plus
CG32751-RA 1603 CG32751-RA 1486..1573 1517..1604 215 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6200653..6201387 1461..727 3660 99.9 Minus
X 23542271 X 6201764..6202409 731..86 3230 100 Minus
X 23542271 X 6197862..6198412 729..179 2350 95.1 Minus
X 23542271 X 6200361..6200592 1690..1459 1160 100 Minus
X 23542271 X 6202470..6202546 89..13 370 98.7 Minus
X 23542271 X 6197447..6197610 912..749 280 78 Minus
X 23542271 X 6196741..6196828 1604..1517 215 83 Minus
X 23542271 X 6218525..6218578 642..589 195 90.7 Minus
Blast to na_te.dros performed on 2014-11-27 10:43:43 has no hits.

BO09568.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:59 Download gff for BO09568.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 1..1677 17..1694 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:22 Download gff for BO09568.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 10..1695 9..1695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:40:45 Download gff for BO09568.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 18..1691 17..1692 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:00 Download gff for BO09568.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 10..1695 9..1695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:19 Download gff for BO09568.complete
Subject Subject Range Query Range Percent Splice Strand
vanin-like-RA 18..1691 17..1692 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:19 Download gff for BO09568.complete
Subject Subject Range Query Range Percent Splice Strand
X 6200359..6200589 1462..1692 99 <- Minus
X 6200653..6201382 732..1461 100 <- Minus
X 6201764..6202406 89..731 100 <- Minus
X 6202471..6202542 17..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:40:45 Download gff for BO09568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6094392..6094622 1462..1692 99 <- Minus
arm_X 6094686..6095415 732..1461 100 <- Minus
arm_X 6095797..6096439 89..731 100 <- Minus
arm_X 6096504..6096575 17..88 100   Minus

BO09568.pep Sequence

Translation from 16 to 1708

> BO09568.pep
MSNTWWWLSVVLLILGLMPGMSQQAALAESDYYTAGVVEFKQSILSLSAW
SDSLAGYVEIINSENASATDIIVFPESTLNSAGSTTFVPNPEDQINPCLS
DPNATYYEEFLVTLSCAARNASKYIVINLTEKQKCEDIPEDTRPCASNGL
NVFNTNVVFDRQGVVVSRYRKVHLYGEAKNSTFLPELITFETDFGVTFGH
FICFDILFYTPAHQLIVEQGITDFVYPAMWFSQLPFLTAVQTQQGWAYAN
DVNLLASGASRPSIGNSGSGIYHGRSGTLTSVMRQDSGERAIYVAQVPKY
TRSRSLKKRAKRSLQEIQTRQVASSSSFYMKRDYVENYESELLKLDEGTS
GAINRTICQGSFCCNFDIAWRSLGTATENGSYYSYRLGTYDGWRNENNVD
ANYIRNCALFTCSGDSIDDCGKLLPTEGELQQSRVTFTRLAIGVTYPESR
EFLLFPDTLQDSLLPLEPSQFEWSQRKPTEDSYVQEVRFALKETQELSNL
LTFGIYGNYYDNECTFGVGTEEEQLACGYRSGSPGLRILGGWLAMPLIIL
AIARTMSSASFLDH

BO09568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
vanin-like-PA 558 CG32754-PA 1..558 1..558 2927 100 Plus
CG32751-PA 517 CG32751-PA 1..514 1..531 2071 73.8 Plus
CG32751-PB 525 CG32751-PB 1..522 1..531 2052 72.7 Plus
CG32750-PA 523 CG32750-PA 25..502 29..519 832 40.7 Plus
Btd-PA 553 CG3599-PA 4..508 8..510 830 39.6 Plus