Clone Sequence Records
BO09569.5prime Sequence
894 bp (790 high quality bases) assembled on 2006-01-23
> BO09569.5prime
GAAGTTATCAGTCGACATGAAAGCGGTTCTCTGCGCGATTTTTGTAACTT
TGCTGGCCGCTATTGGCCAGGGATTGCCCACTCAGTTGGAGGATGAGAAT
CATGGATCCTTTGCCGGCCAAGTTTCCCAGCTGATTGCTCTGCAGCTGCT
GAAGTTCAACAAGGACATCGATGCCAATCAGGTGCATTCTCCATTGGGAG
TAGCTTCTATTCTGGCCATGCTGGCGGAGGCTTCCGAAGGCGATACCTAC
TCGGAGTTTGAGCAAGTCTTCGGTTACCCCAAGGATCGCACCAAGTTGAG
GGATGCCTACAAGAGGATCCTGGGAAGCTACCAGAACAGAGATGCTGCCG
TGGCCCTGCCCTCCTTCCAAACCTGGTTGTACATCTACCGGAATAACAGT
GCCCGCGAGGAGTTCAAGGATCTGCTCGAGAAACACTACTATGTGGATGT
GAAGGATATCAGTCGGCAGGAGTACGACTGGAATGAGCCCAACACCTCGC
TGCAACTTTCAGAGGAAAAGGACAACACGGATTCCACAGAGGGAAGCACC
GAACAAAGCAACAGCAAGGACGTCATAGGATTCGAGACCCTAAAGAGAAT
TAAGCTGGATGACGAGGACATCCCTGCCATTCCATCCGATGGCTATGGCC
AGGAAATCATCGACAAAGAGGCCTCCAAGTTCGATCGCGACGTGGACGAC
AAGCAATATGTGGAAAAACCAGTTGCCCAGGCTGAGGCCGAGCTACTGCA
GAAAGAACAGAAGCAGCAGGCCACCACAGAATCTGAATTGGAATCCCAGC
CCGAGGAAACACCACTCTTTCTGTGGAAAAACAGGAAAAACCAGACATGG
CAGCCGAGGAAAATCAGCAGAAAAGCAGCAAAACAAGCGCAGCG
BO09569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1342-PA | 1950 | CG1342-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
| CG1342-PA | 1950 | CG1342-RA | 795..850 | 810..865 | 280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn100A-RA | 2038 | CG1342-RA | 21..901 | 16..894 | 4340 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30690662..30691542 | 16..894 | 4290 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:44:47 has no hits.
BO09569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:33 Download gff for
BO09569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1342-PA | 1..880 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:55 Download gff for
BO09569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1342-PA | 1..880 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:16:15 Download gff for
BO09569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn100A-RA | 14..901 | 8..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:14:06 Download gff for
BO09569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn100A-RA | 14..901 | 8..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:14:06 Download gff for
BO09569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30690655..30691542 | 8..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:16:15 Download gff for
BO09569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26516377..26517264 | 8..894 | 99 | | Plus |
BO09569.3prime Sequence
872 bp (839 high quality bases) assembled on 2006-01-23
> BO09569.3prime
ATGGTCTAGAAAGCTTGCAGACTGCTCCAGCTCCACTTCGATGGAGACTG
AGGGCAGATCTTCCTTAAACTCGGGCGTGTAGATTTTTCCGGAGGCCAGG
ACGAACTGCTCCTGGCAGTCGACGATGAAGTAGGCAAAAGGACGATTCAC
CTCGAAGCGTTCCACTCCTGGCAATTCGGGTTCAGGTTCCGGAACTGGGA
GAACTGTGGACTCCACGCTGGGAGTTCTGGCCTGCATGGTGGCAGCTGAC
AGGGAATTGGCACTGCTGCCTCCCTCGTCCACGCGAACATTTACGAACTG
GACTATCTCATCCACGTGGACATCGGGATCCTCGGACAGCAAGCTCAACT
GAGCTTCGGTCCTCGAGAAGACCTTCTTTAAGCCCATCTGCTTGAGCATT
GCCTCGGAGCGTGAGGTCTCCTCCACTTGGAATTTGGGCATCGAAATATG
CAGCTCCTTCATTTGGAACTGCTTCTTGGCCAACAGGAAGTCACTCGTCT
GCAGCTGGGAAATCACATCACTAAGTCCCTCCGTTTCGTCCGGCAGGACA
ATGCACAAGGCATATCGGGAGGTTTCGTAGGGCAGGCTTAGAACTCGGGC
TTTGACCTGTGGAAGATCTGCTACCTGGAATTTGCCACGGGCATGCATCA
TTGGAGCCTTCACGGCGTCCTCGTTGGTCATGAAGAAAAACTCATCGCTG
CCATCTCGCAGCTGATAGAAGGGATTGGCCCAGCTGCCGCGGTAGTAGAG
TCCGTTAAAGAGGAGCATCTTGGACTTTGATCCTGCCGATCGTCCCGTGA
TGGAGTTGGCACTTAGGGCAGACGTGATGTCATCCTGCTGGAACAAACTT
CGTGCGCCATTGACCCGACTGA
BO09569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1342-PA | 1950 | CG1342-RA | 1094..1947 | 872..19 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn100A-RA | 2038 | CG1342-RA | 1115..1968 | 872..19 | 4270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30691852..30692698 | 865..19 | 4235 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:42:38 has no hits.
BO09569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:32 Download gff for
BO09569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1342-PA | 1095..1950 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:19:54 Download gff for
BO09569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1342-PA | 1095..1950 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:08:46 Download gff for
BO09569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn100A-RA | 1116..1968 | 19..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:06 Download gff for
BO09569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn100A-RA | 1116..1968 | 19..871 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:06 Download gff for
BO09569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30691846..30692698 | 19..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:08:46 Download gff for
BO09569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26517568..26518420 | 19..871 | 99 | | Minus |
BO09569.complete Sequence
1981 bp assembled on 2007-11-02
GenBank Submission: FJ631535
> BO09569.complete
GAAGTTATCAGTCGACATGAAAGCGGTTCTCTGCGCGATTTTTGTAACTT
TGCTGGCCGCTATTGGCCAGGGATTGCCCACTCAGTTGGAGGATGAGAAT
CATGGATCCTTTGCCGGCCAAGTTTCCCAGCTGATTGCTCTGCAGCTGCT
GAAGTTCAACAAGGACATCGATGCCAATCAGGTGCATTCTCCATTGGGAG
TAGCTTCTATTCTGGCCATGCTGGCGGAGGCTTCCGAAGGCGATACCTAC
TCGGAGTTTGAGCAAGTCTTCGGTTACCCCAAGGATCGCACCAAGTTGAG
GGATGCCTACAAGAGGATCCTGGGAAGCTACCAGAACAGAGATGCTGCCG
TGGCCCTGCCCTCCTTCCAAACCTGGTTGTACATCTACCGGAATAACAGT
GCCCGCGAGGAGTTCAAGGATCTGCTCGAGAAACACTACTATGTGGATGT
GAAGGATATCAGTCGGCAGGAGTACGACTGGAATGAGCCCAACACCTCGC
TGCAACTTTCAGAGGAAAAGGACAACACGGATTCCACAGAGGGAAGCACC
GAACAAAGCAACAGCAAGGACGTCATAGGATTCGAGACCCTAAAGAGAAT
TAAGCTGGATGACGAGGACATCCCTGCCATTCCATCCGATGGCTATGGCC
AGGAAATCATCGACAAAGAGGCCTCCAAGTTCGATCGCGACGTGGACGAC
AAGCAATATGTGGAAAAACCAGTTGCCCAGGCTGAGGCCGAGCTACTGCA
GAAAGAACAGAAGCAGCAGGCCACCACAGAATCTGAATTGGAATCCCAGC
CCGAGGAAACCACCACTCTTTCTGTGGAAAAACAGGAAAAACCAGACATG
GCAGCCGAGGAAAATCCAGCAGAAAAGCAGCAGAACAAGCGCAGCGACCA
GGAGGAGAGCCAGATCAAGAACCTCGAGGAGAACGAGACTGTGCAAGAGG
AGGAGAAGCTGGCCAAGATCATGGCAGCTCCCGCTTTGACCGCCGGTGAA
CCCGAGAAGGTGCGTCTGCCCCTCCAGAAGTTGGAGAATGCCGTGAAGAC
GGCGGCCAAGGATGGCGCTGATGAAATCATGCTCGCTCTGGAGTCGCACC
TACCTTCTGTCAGTCGGGTCAATGGCGCACGAAGTTTGTTCCAGCAGGAT
GACATCACGTCTGCCCTAAGTGCCAACTCCATCACGGGACGATCGGCAGG
ATCAAAGTCCAAGATGCTCCTCTTTAACGGACTCTACTACCGCGGCAGCT
GGGCCAATCCCTTCTATCAGCTGCGAGATGGCAGCGATGAGTTTTTCTTC
ATGACCAACGAGGACGCCGTGAAGGCTCCAATGATGCATGCCCGTGGCAA
ATTCCAGGTAGCAGATCTTCCACAGGTCAAAGCCCGAGTTCTAAGCCTGC
CCTACGAAACCTCCCGATATGCCTTGTGCATTGTCCTGCCGGACGAAACG
GAGGGACTTAGTGATGTGATTTCCCAGCTGCAGACGAGTGACTTCCTGTT
GGCCAAGAAGCAGTTCCAAATGAAGGAGCTGCATATTTCGATGCCCAAAT
TCCAAGTGGAGGAGACCTCACGCTCCGAGGCAATGCTCAAGCAGATGGGC
TTAAAGAAGGTCTTCTCGAGGACCGAAGCTCAGTTGAGCTTGCTGTCCGA
GGATCCCGATGTCCACGTGGATGAGATAGTCCAGTTCGTAAATGTTCGCG
TGGACGAGGGAGGCAGCAGTGCCAATTCCCTGTCAGCTGCCACCATGCAG
GCCAGAACTCCCAGCGTGGAGTCCACAGTTCTCCCAGTTCCGGAACCTGA
ACCCGAATTGCCAGGAGTGGAACGCTTCGAGGTGAATCGTCCTTTTGCCT
ACTTCATCGTCGACTGCCAGGAGCAGTTCGTCCTGGCCTCCGGAAAAATC
TACACGCCCGAGTTTAAGGAAGATCTGCCCTCAGTCTCCATCGAAGTGGA
GCTGGAGCAGTCTGCAAGCTTTCTAGACCAT
BO09569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn100A-RA | 1950 | CG1342-PA | 1..1947 | 17..1963 | 9735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn100A-RA | 2038 | CG1342-RA | 21..1968 | 16..1963 | 9740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30690662..30691765 | 16..1119 | 5520 | 100 | Plus |
| 3R | 32079331 | 3R | 30691852..30692698 | 1117..1963 | 4235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:36 has no hits.
BO09569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:48 Download gff for
BO09569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1342-RA | 1..1950 | 17..1964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:11 Download gff for
BO09569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1342-RA | 12..1966 | 8..1963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:21 Download gff for
BO09569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn100A-RA | 22..1968 | 17..1965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:34 Download gff for
BO09569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1342-RA | 20..1966 | 17..1965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:26 Download gff for
BO09569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn100A-RA | 22..1968 | 17..1965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:26 Download gff for
BO09569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30690663..30691763 | 17..1117 | 100 | -> | Plus |
| 3R | 30691853..30692698 | 1118..1965 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:21 Download gff for
BO09569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26516385..26517485 | 17..1117 | 100 | -> | Plus |
| arm_3R | 26517575..26518420 | 1118..1965 | 99 | | Plus |
BO09569.pep Sequence
Translation from 16 to 1981
> BO09569.pep
MKAVLCAIFVTLLAAIGQGLPTQLEDENHGSFAGQVSQLIALQLLKFNKD
IDANQVHSPLGVASILAMLAEASEGDTYSEFEQVFGYPKDRTKLRDAYKR
ILGSYQNRDAAVALPSFQTWLYIYRNNSAREEFKDLLEKHYYVDVKDISR
QEYDWNEPNTSLQLSEEKDNTDSTEGSTEQSNSKDVIGFETLKRIKLDDE
DIPAIPSDGYGQEIIDKEASKFDRDVDDKQYVEKPVAQAEAELLQKEQKQ
QATTESELESQPEETTTLSVEKQEKPDMAAEENPAEKQQNKRSDQEESQI
KNLEENETVQEEEKLAKIMAAPALTAGEPEKVRLPLQKLENAVKTAAKDG
ADEIMLALESHLPSVSRVNGARSLFQQDDITSALSANSITGRSAGSKSKM
LLFNGLYYRGSWANPFYQLRDGSDEFFFMTNEDAVKAPMMHARGKFQVAD
LPQVKARVLSLPYETSRYALCIVLPDETEGLSDVISQLQTSDFLLAKKQF
QMKELHISMPKFQVEETSRSEAMLKQMGLKKVFSRTEAQLSLLSEDPDVH
VDEIVQFVNVRVDEGGSSANSLSAATMQARTPSVESTVLPVPEPEPELPG
VERFEVNRPFAYFIVDCQEQFVLASGKIYTPEFKEDLPSVSIEVELEQSA
SFLDH
BO09569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn100A-PA | 649 | CG1342-PA | 1..649 | 1..649 | 3271 | 100 | Plus |
| Spn55B-PA | 374 | CG10913-PA | 108..358 | 340..614 | 262 | 26.1 | Plus |
| Spn42Da-PG | 379 | CG9453-PG | 143..376 | 381..628 | 247 | 25.7 | Plus |
| Spn42Da-PD | 411 | CG9453-PD | 175..408 | 381..628 | 247 | 25.7 | Plus |
| Spn42Dc-PB | 403 | CG9455-PB | 154..339 | 387..573 | 230 | 28.9 | Plus |
