Clone Sequence Records
BO09571.3prime Sequence
923 bp (804 high quality bases) assembled on 2006-01-23
> BO09571.3prime
ATGGTCTAGAAAGCTTGCACGCGGCAAATCGTTGAGCACGAGCGTGGACG
TGTAGCTGGGCGCCTGGATGTGTGCCGTCTTTGTCGTCGTCAGCATGGTG
GTGGTCGTCATGGTGGTCTTGCCGTTGACATCTGCATGCACCACATCCTG
CCCGCCCTTCGGCGGCGTGTCCACCCCCTCTACATAGCCAACCGTCGTGA
CCTGAACACTCGTCTTTGTTAGCCGGTGGGTGCGCAGCTTGGGCAACCGC
GAGCTCAGATCCGTTCCCGTGGACTCATCGTCGCTGTAGTCGCTGGTCAA
GGCGCTTCCTGTTCGCCCGGAGCTGTCGTACGAGTATTGAGTGTGATAGG
TGCTGCTGGGCTCTCCGCTGCCTCCTCTCGTGTTGTTCCCTTCCCTGAGG
GCCACCTCCGTCTCGCCCCGATTGTTGTTCGACTGATTGCTGCTTCTCTG
CTGCTGGAGCGAGCTGGTGGAAGCGGCGGTTATGTCCTCCTCCGAGATGT
CATCGAAGGCCGGCGGCGGCGTCGACATGCCCGACATCGTCATGATCGGC
TGACGAACTGCATTTGTTGGTGTACTCAATGGCGGTAAGCGCGATGCCGG
CGAGCGCAGCTGCGTGGTCGAGGTTTTGCGCTTGGAGGGGGAATGTTTCA
GTGGAAATGTGGGCGTCTTCTTGAACACCTGTTTGCCCATGGCGTCCTGG
AAGCGCTTGGCGTAGAAGGAGGGTCGGCACACGGACACTGTGTCTCCGTT
GTACAGAATGCTTTTGAATGTGTGCTCCAGCTTCTTTTCCAGGCGATACG
ACTGCAAAATGTCGATGATGCCGATGTACAAGATCAACCGCTCGTCGTTT
TCAGAACGAGCCGGAATGCCGCCGGCGGGTACATCCTCGTCCTCCTCGAG
CGGCACATCCATATCAGCCGTAA
BO09571.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9985-PA | 2379 | sktl-RA | 1472..2376 | 923..19 | 4525 | 100 | Minus |
| CG3682-PB | 1575 | PIP5K59B-RB | 1297..1325 | 786..758 | 145 | 100 | Minus |
| CG3682-PA | 2190 | PIP5K59B-RA | 1297..1325 | 786..758 | 145 | 100 | Minus |
| CG3682-PC | 2838 | PIP5K59B-RC | 1297..1325 | 786..758 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sktl-RC | 2939 | CG9985-RC | 1854..2758 | 923..19 | 4525 | 100 | Minus |
| sktl-RB | 3215 | CG9985-RB | 2130..3034 | 923..19 | 4525 | 100 | Minus |
| sktl-RA | 3747 | CG9985-RA | 2130..3034 | 923..19 | 4525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20827995..20828899 | 19..923 | 4525 | 100 | Plus |
| 2R | 25286936 | 2R | 22877124..22877194 | 828..758 | 205 | 85.9 | Minus |
Blast to na_te.dros performed 2015-02-10 21:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7163..7198 | 457..422 | 108 | 77.8 | Minus |
BO09571.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:36 Download gff for
BO09571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-PA | 1474..2379 | 16..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:00 Download gff for
BO09571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9985-PA | 1474..2379 | 16..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:56:55 Download gff for
BO09571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 2130..3034 | 19..923 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:41 Download gff for
BO09571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 2130..3034 | 19..923 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:41 Download gff for
BO09571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20827995..20828899 | 19..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:56:55 Download gff for
BO09571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16715500..16716404 | 19..923 | 100 | | Plus |
BO09571.5prime Sequence
830 bp (741 high quality bases) assembled on 2006-01-23
> BO09571.5prime
GAAGTTATCAGTCGACATGGACACCCGCGTGGAACTGGAACTGGAGCCGG
TTGGCAAACAGGATAGGCTAAAGGATCAGCCGGATGATGAGAATGAACCG
CTGGAAAACCAGCTGGAGCTGGAGCAAGAGCACAAGAGCCTGCTCACGCC
GGTCAAGATTCCCCCGGCTCAGACCGCAAGTCCCGACCAGGAGGCCACGC
CCAGCACCCCACCACCCATGAGCCTGCAGCCGGGAACATCTCGGCAGTTG
TTCAGGGATGCCGCTATGGCGCACGGAGGCCAGGAGACCACATCGTTGCT
GCAGCAGGAACTGAACAACATAGCCGCCACCCAAACGCCGGCCTCGAAAC
TCAGAAGCGCAAGCTCCACGCTGGATGCCAGTATATCCCGGAATCCCTCC
ACCACGGGCGGGAAGCACGAGAAGAAGCTGGGCCACCGGCGAGTGGCGGA
GGGCGGTGAGGTGACCTACAAGAAGATCCAATCCAAGCAAATCATGGGCT
CCATTCAGCTGGGCATCCAGCATACGGTGGGCAGCCTGGCCAGTAAGCCC
AAGCGGGATCTGCTAATGAATGACTTCTGGGAAATGGAAACGATTTCGTT
TCCGCCAGATGGTTCCTCCATAACACCTGCCCATCACTACAACGACTTCC
GCTTCAAGGTCTACGCACCCATCGCCTTTCGCTACTTCCGAGATCTGTTC
GGAATCGCACCCGATGACTTCCTCATGTCCATGTGTGCGTCTCCCCTGAG
GGAGCTTTCCCATCCGGGTGCCTCTGGTTCCATATTTTACCTGACGACCG
ACGACGAGTTCATTATCAAGACGGTGCAGA
BO09571.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9985-PA | 2379 | sktl-RA | 1..814 | 17..830 | 4045 | 99.8 | Plus |
| CG3682-PB | 1575 | PIP5K59B-RB | 529..575 | 782..828 | 160 | 93.6 | Plus |
| CG3682-PA | 2190 | PIP5K59B-RA | 529..575 | 782..828 | 160 | 93.6 | Plus |
| CG3682-PC | 2838 | PIP5K59B-RC | 529..575 | 782..828 | 160 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sktl-RC | 2939 | CG9985-RC | 383..1196 | 17..830 | 4055 | 99.9 | Plus |
| sktl-RB | 3215 | CG9985-RB | 659..1472 | 17..830 | 4055 | 99.9 | Plus |
| sktl-RA | 3747 | CG9985-RA | 659..1472 | 17..830 | 4055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20829557..20830370 | 830..17 | 4055 | 99.9 | Minus |
| 2R | 25286936 | 2R | 22875894..22876085 | 526..717 | 315 | 77.6 | Plus |
| 2R | 25286936 | 2R | 22876145..22876248 | 725..828 | 280 | 84.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:23:10 has no hits.
BO09571.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:37 Download gff for
BO09571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:02 Download gff for
BO09571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9985-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:07:23 Download gff for
BO09571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 653..1471 | 10..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:30 Download gff for
BO09571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 653..1471 | 10..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:30 Download gff for
BO09571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20829558..20830376 | 10..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:07:23 Download gff for
BO09571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16717063..16717881 | 10..829 | 99 | | Minus |
BO09571.complete Sequence
2410 bp (2410 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631536
> BO09571.complete
GAAGTTATCAGTCGACATGGACACCCGCGTGGAACTGGAACTGGAGCCGG
TTGGCAAACAGGATAGGCTAAAGGATCAGCCGGATGATGAGAATGAACCG
CTGGAAAACCAGCTGGAGCTGGAGCAAGAGCACAAGAGCCTGCTCACGCC
GGTCAAGATTCCCCCGGCTCAGACCGCAAGTCCCGACCAGGAGGCCACGC
CCAGCACCCCACCACCCATGAGCCTGCAGCCGGGAACATCTCGGCAGTTG
TTCAGGGATGCCGCTATGGCGCACGGAGGCCAGGAGACCACATCGTTGCT
GCAGCAGGAACTGAACAACATAGCCGCCACCCAAACGCCGGCCTCGAAAC
TCAGAAGCGCAAGCTCCACGCTGGATGCCAGTATATCCCGGAATCCCTCC
ACCACGGGCGGGAAGCACGAGAAGAAGCTGGGCCACCGGCGAGTGGCGGA
GGGCGGTGAGGTGACCTACAAGAAGATCCAATCCAAGCAAATCATGGGCT
CCATTCAGCTGGGCATCCAGCATACGGTGGGCAGCCTGGCCAGTAAGCCC
AAGCGGGATCTGCTAATGAATGACTTCTGGGAAATGGAAACGATTTCGTT
TCCGCCAGATGGTTCCTCCATAACACCTGCCCATCACTACAACGACTTCC
GCTTCAAGGTCTACGCACCCATCGCCTTTCGCTACTTCCGAGATCTGTTC
GGAATCGCACCCGATGACTTCCTCATGTCCATGTGTGCGTCTCCCCTGAG
GGAGCTTTCCAATCCGGGTGCCTCTGGTTCCATATTTTACCTGACGACCG
ACGACGAGTTCATTATCAAGACGGTGCAGAAGAAGGAATGCGAGTTCCTG
CAAAAACTTTTGCCCGGTTATTACATGAACCTATCGCAGAATCCTCGAAC
GCTGCTGCCTAAGTTCTTCGGACTATATTGCTTCCACTACAACTCGAAGA
ACGTGCGGTTGGTGGCCATGAACAACCTGTTGCCTTCAGACATTAAGATG
CACTGCAAGTACGACCTTAAGGGATCTTCCTTCCGACGGAAGGCCTCCAA
GGCAGAGCGACAAAAGGCGAGTCCCACGTTCAAGGACCTCGACTTTGCTG
AGCACCATCCGAATGGCATATTCCTGGAGACGGACAAGTACAATGCACTG
ATGAGCACCATTAAGCGGGACTGTATGGTGCTGGAGAGTTTTCAGATTAT
GGACTACTCGCTGTTGGTGGGAATCCACAACCTGGACCTGGCCGCCAAGG
AGAAACGCGAAGAACGAATCCTAAATGCGCGAGCTAAGCTGCAGCGCAAG
GAAAGCGCCGCTCAGGGACCACCTTCCTTAAATCCGGACGACGATGCTCC
GGAAGCGGATCAGAATCAGCTCCAAGCGGTGGCCTCATACGCCTCCATAC
CGGGAACTTCGGCTGGAGCTGCCCTGAATCGAACGCGCAGTATGAATCGT
CAGCGTTTGGTGGCCCATTCCACTGCACTGGAGTCCATTACGGCTGATAT
GGATGTGCCGCTCGAGGAGGACGAGGATGTACCCGCCGGCGGCATTCCGG
CTCGTTCTGAAAACGACGAGCGGTTGATCTTGTACATCGGCATCATCGAC
ATTTTGCAGTCGTATCGCCTGGAAAAGAAGCTGGAGCACACATTCAAAAG
CATTCTGTACAACGGAGACACAGTGTCCGTGTGCCGACCCTCCTTCTACG
CCAAGCGCTTCCAGGACGCCATGGGCAAACAGGTGTTCAAGAAGACGCCC
ACATTTCCACTGAAACATTCCCCCTCCAAGCGCAAAACCTCGACCACGCA
GCTGCGCTCGCCGGCATCGCGCTTACCGCCATTGAGTACACCAACAAATG
CAGTTCGTCAGCCGATCATGACGATGTCGGGCATGTCGACGCCGCCGCCG
GCCTTCGATGACATCTCGGAGGAGGACATAACCGCCGCTTCCACCAGCTC
GCTCCAGCAGCAGAGAAGCAGCAATCAGTCGAACAACAATCGGGGCGAGA
CGGAGGTGGCCCTCAGGGAAGGGAACAACACGAGAGGAGGCAGCGGAGAG
CCCAGCAGCACCTATCACACTCAATACTCGTACGACAGCTCCGGGCGAAC
AGGAAGCGCCTTGACCAGCGACTACAGCGACGATGAGTCCACGGGAACGG
ATCTGAGCTCGCGGTTGCCCAAGCTGCGCACCCACCGGCTAACAAAGACG
AGTGTTCAGGTCACGACGGTTGGCTATGTAGAGGGGGTGGACACGCCGCC
GAAGGGCGGGCAGGATGTGGTGCATGCAGATGTCAACGGCAAGACCACCA
TGACGACCACCACCATGCTGACGACGACAAAGACGGCACACATCCAGGCG
CCCAGCTACACGTCCACGCTCGTGCTCAACGATTTGCCGCGTGCAAGCTT
TCTAGACCAT
BO09571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sktl-RC | 2379 | CG9985-PC | 1..2376 | 17..2392 | 11880 | 100 | Plus |
| sktl-RB | 2379 | CG9985-PB | 1..2376 | 17..2392 | 11880 | 100 | Plus |
| sktl-RA | 2379 | CG9985-PA | 1..2376 | 17..2392 | 11880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sktl-RC | 2939 | CG9985-RC | 383..2758 | 17..2392 | 11880 | 100 | Plus |
| sktl-RB | 3215 | CG9985-RB | 659..3034 | 17..2392 | 11880 | 100 | Plus |
| sktl-RA | 3747 | CG9985-RA | 659..3034 | 17..2392 | 11880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20827995..20830370 | 2392..17 | 11880 | 100 | Minus |
| 2R | 25286936 | 2R | 22876445..22876727 | 960..1242 | 350 | 74.9 | Plus |
| 2R | 25286936 | 2R | 22875894..22876085 | 526..717 | 315 | 77.6 | Plus |
| 2R | 25286936 | 2R | 22876145..22876248 | 725..828 | 295 | 85.6 | Plus |
| 2R | 25286936 | 2R | 22877124..22877194 | 1583..1653 | 205 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:34:11 has no hits.
BO09571.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:58 Download gff for
BO09571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 1..2379 | 17..2395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:49 Download gff for
BO09571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 649..3030 | 10..2392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:10 Download gff for
BO09571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 659..3034 | 17..2394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:59 Download gff for
BO09571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 649..3030 | 10..2392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:17 Download gff for
BO09571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sktl-RA | 659..3034 | 17..2394 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:17 Download gff for
BO09571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20827992..20830370 | 17..2394 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:10 Download gff for
BO09571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16715497..16717875 | 17..2394 | 99 | | Minus |
BO09571.pep Sequence
Translation from 16 to 2410
> BO09571.pep
MDTRVELELEPVGKQDRLKDQPDDENEPLENQLELEQEHKSLLTPVKIPP
AQTASPDQEATPSTPPPMSLQPGTSRQLFRDAAMAHGGQETTSLLQQELN
NIAATQTPASKLRSASSTLDASISRNPSTTGGKHEKKLGHRRVAEGGEVT
YKKIQSKQIMGSIQLGIQHTVGSLASKPKRDLLMNDFWEMETISFPPDGS
SITPAHHYNDFRFKVYAPIAFRYFRDLFGIAPDDFLMSMCASPLRELSNP
GASGSIFYLTTDDEFIIKTVQKKECEFLQKLLPGYYMNLSQNPRTLLPKF
FGLYCFHYNSKNVRLVAMNNLLPSDIKMHCKYDLKGSSFRRKASKAERQK
ASPTFKDLDFAEHHPNGIFLETDKYNALMSTIKRDCMVLESFQIMDYSLL
VGIHNLDLAAKEKREERILNARAKLQRKESAAQGPPSLNPDDDAPEADQN
QLQAVASYASIPGTSAGAALNRTRSMNRQRLVAHSTALESITADMDVPLE
EDEDVPAGGIPARSENDERLILYIGIIDILQSYRLEKKLEHTFKSILYNG
DTVSVCRPSFYAKRFQDAMGKQVFKKTPTFPLKHSPSKRKTSTTQLRSPA
SRLPPLSTPTNAVRQPIMTMSGMSTPPPAFDDISEEDITAASTSSLQQQR
SSNQSNNNRGETEVALREGNNTRGGSGEPSSTYHTQYSYDSSGRTGSALT
SDYSDDESTGTDLSSRLPKLRTHRLTKTSVQVTTVGYVEGVDTPPKGGQD
VVHADVNGKTTMTTTTMLTTTKTAHIQAPSYTSTLVLNDLPRASFLDH
BO09571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sktl-PC | 792 | CG9985-PC | 1..792 | 1..792 | 4082 | 100 | Plus |
| sktl-PB | 792 | CG9985-PB | 1..792 | 1..792 | 4082 | 100 | Plus |
| sktl-PA | 792 | CG9985-PA | 1..792 | 1..792 | 4082 | 100 | Plus |
| PIP5K59B-PA | 729 | CG3682-PA | 1..508 | 84..612 | 1677 | 63.7 | Plus |
| PIP5K59B-PH | 756 | CG3682-PH | 1..508 | 84..612 | 1677 | 63.7 | Plus |
