Clone Sequence Records
BO09573.3prime Sequence
937 bp (859 high quality bases) assembled on 2006-01-23
> BO09573.3prime
ATGGTCTAGAAAGCTTGCCACAGACGTGTAAAAGTGTTCTCGCTTGCGGT
GGCAACAAATAAATAACGTTATGTATAAGAATGTTGCAACAATGCCCAAA
GTGTTGAGCGCCATGGAGAAGGCGAGCAGATACTTCCATTCGATCCGAAG
CTCGGCACAACCATCGTTTTGTGACGCCTCCTCCTGACCAACTGCAAATG
CCATTGGAGCCTCGGAGGAGTAGTTGGCCACCACCTCACCTGCCGCCAAG
CAGGTGCAATTGTGATAGCTAAGCAATGAGCTCGATGTTGGTCCACATTC
TCCGTCTGCGGATGAGATGAGCTCCGCGAACTCAATTGCCGCACAGACGA
GGGCCAAGCAGCAGAAGATCAACGCCAGGCCAGTGAACACATACGACTCG
GCCAGCAGGACCTTGTAGCAACTATTGGTCTGCGGTCTGTGCTCCGTGAT
CTTGTGATCCCTTCGCAGCAGTATGAGCCCCGCAATGCTGGCCAATAGCA
GCGACAATCCACTCAGATACGGATTGATCAATATGGACGCATTGGGGGCT
AGGATTAGTATCCAAACGGCAAGACCCACGATGAACAGGCCCACAGCTAA
TTGCATAACCAGAAGCTGGCGAGATATATTCAGATTCCTGGTGGCCTGGA
GACTGTCGTGGTTTTTGTGATTGACAACGATCATGCGGCTGTGCCTGAGG
CTGTTGCGAGTTGGCGTATGTCGTCCGGCGATCTTCATGCCCTTCATGTT
CTGCGGCACTGTGGTGCTCATGTAGACGGCCTGCGATGCCTGCGGTGCTT
CCATGTCGCTGAGTGGAATCTGTTCGTAGGTGGTCGCATAGCGCAGTGCC
CTACTATGATCGCTAACTGGAGCCGTCNGCTGTGCTGGTTGCGCTGGAAG
ATCGGGAGCAGCCACTGCCGGCAGTTCGTCGCGTTGC
BO09573.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-PA | 1200 | CG1806-RA | 279..1197 | 937..19 | 4551 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-RB | 1582 | CG1806-RB | 542..1460 | 937..19 | 4569 | 99.8 | Minus |
CG1806-RA | 1648 | CG1806-RA | 608..1526 | 937..19 | 4569 | 99.8 | Minus |
CG1492-RB | 2289 | CG1492-RB | 2218..2289 | 19..90 | 360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12009240..12009572 | 502..170 | 1665 | 100 | Minus |
X | 23542271 | X | 12008548..12008705 | 937..780 | 764 | 98.7 | Minus |
X | 23542271 | X | 12009023..12009174 | 653..502 | 760 | 100 | Minus |
X | 23542271 | X | 12009632..12009782 | 169..19 | 755 | 100 | Minus |
X | 23542271 | X | 12008768..12008898 | 782..652 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:06:06 has no hits.
BO09573.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:40 Download gff for
BO09573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-PA | 279..1200 | 18..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:06 Download gff for
BO09573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-PA | 279..1200 | 18..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:26:53 Download gff for
BO09573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 608..1526 | 19..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:54 Download gff for
BO09573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 608..1526 | 19..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:54 Download gff for
BO09573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12008548..12008704 | 781..937 | 98 | -> | Minus |
X | 12008770..12008896 | 654..780 | 100 | -> | Minus |
X | 12009023..12009174 | 502..653 | 100 | -> | Minus |
X | 12009241..12009572 | 170..501 | 100 | -> | Minus |
X | 12009632..12009782 | 19..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:26:53 Download gff for
BO09573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11902581..11902737 | 781..937 | 98 | -> | Minus |
arm_X | 11902803..11902929 | 654..780 | 100 | -> | Minus |
arm_X | 11903056..11903207 | 502..653 | 100 | -> | Minus |
arm_X | 11903274..11903605 | 170..501 | 100 | -> | Minus |
arm_X | 11903665..11903815 | 19..169 | 100 | | Minus |
BO09573.5prime Sequence
903 bp (828 high quality bases) assembled on 2006-01-23
> BO09573.5prime
GAAGTTATCAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCT
ACGACAACTTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCT
GGCGAACCGGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAG
CCATAGCATAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGT
TCTTCGGCATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCA
GTGACGACGATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACG
CGACGAACTGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCAC
AGCCGACGGCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACC
ACCTACGAACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCA
GGCCGTCTACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGA
TCGCCGGACGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATG
ATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCT
GAATATATCTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCA
TCGTGGGTCTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATA
TTGATCAATCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGC
GGGGCTCATACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGC
AGACCAATAGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACT
GGCCTGGCGTTGATCTTCTGCTGCTTGGCCCTCGTCTGTGCGGGCATTGA
GTT
BO09573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-PA | 1200 | CG1806-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-RB | 1582 | CG1806-RB | 263..1150 | 16..903 | 4410 | 99.8 | Plus |
CG1806-RA | 1648 | CG1806-RA | 329..1216 | 16..903 | 4410 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12008269..12008705 | 16..452 | 2185 | 100 | Plus |
X | 23542271 | X | 12009240..12009413 | 730..903 | 840 | 98.9 | Plus |
X | 23542271 | X | 12009023..12009174 | 579..730 | 760 | 100 | Plus |
X | 23542271 | X | 12008768..12008898 | 450..580 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:11:07 has no hits.
BO09573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:41 Download gff for
BO09573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:08 Download gff for
BO09573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:29 Download gff for
BO09573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 326..1216 | 10..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:31 Download gff for
BO09573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 326..1216 | 10..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:31 Download gff for
BO09573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12008266..12008704 | 10..451 | 99 | -> | Plus |
X | 12008770..12008896 | 452..578 | 100 | -> | Plus |
X | 12009023..12009174 | 579..730 | 100 | -> | Plus |
X | 12009241..12009413 | 731..903 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:29 Download gff for
BO09573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11902803..11902929 | 452..578 | 100 | -> | Plus |
arm_X | 11903056..11903207 | 579..730 | 100 | -> | Plus |
arm_X | 11902299..11902737 | 10..451 | 99 | -> | Plus |
arm_X | 11903274..11903446 | 731..903 | 98 | | Plus |
BO09573.complete Sequence
1231 bp (1231 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631537
> BO09573.complete
GAAGTTATCAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCT
ACGACAACTTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCT
GGCGAACCGGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAG
CCATAGCATAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGT
TCTTCGGCATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCA
GTGACGACGATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACG
CGACGAACTGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCAC
AGCCGACGGCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACC
ACCTACGAACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCA
GGCCGTCTACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGA
TCGCCGGACGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATG
ATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCT
GAATATATCTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCA
TCGTGGGTCTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATA
TTGATCAATCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGC
GGGGCTCATACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGC
AGACCAATAGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACT
GGCCTGGCGTTGATCTTCTGCTGCTTGGCCCTCGTCTGTGCGGCAATTGA
GTTCGCGGAGCTCATCTCATCCGCAGACGGAGAATGTGGACCAACATCGA
GCTCATTGCTTAGCTATCACAATTGCACCTGCTTGGCGGCAGGTGAGGTG
GTGGCCAACTACTCCTCCGAGGCTCCAATGGCATTTGCAGTTGGTCAGGA
GGAGGCGTCACAAAACGATGGTTGTGCCGAGCTTCGGATCGAATGGAAGT
ATCTGCTCGCCTTCTCCATGGCGCTCAACACTTTGGGCATTGTTGCAACA
TTCTTATACATAACGTTATTTATTTGTTGCCACCGCAAGCGAGAACACTT
TTACACGTCTGTGGCAAGCTTTCTAGACCAT
BO09573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-RB | 1200 | CG1806-PB | 1..1197 | 17..1213 | 5985 | 100 | Plus |
CG1806-RA | 1200 | CG1806-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-RB | 1582 | CG1806-RB | 263..1460 | 16..1213 | 5990 | 100 | Plus |
CG1806-RA | 1648 | CG1806-RA | 329..1526 | 16..1213 | 5990 | 100 | Plus |
CG1492-RB | 2289 | CG1492-RB | 2218..2289 | 1213..1142 | 360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12008269..12008705 | 16..452 | 2185 | 100 | Plus |
X | 23542271 | X | 12009240..12009572 | 730..1062 | 1665 | 100 | Plus |
X | 23542271 | X | 12009023..12009174 | 579..730 | 760 | 100 | Plus |
X | 23542271 | X | 12009632..12009782 | 1063..1213 | 755 | 100 | Plus |
X | 23542271 | X | 12008768..12008898 | 450..580 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:25:53 has no hits.
BO09573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:00 Download gff for
BO09573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 1..1200 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:24 Download gff for
BO09573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 324..1524 | 10..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:47 Download gff for
BO09573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 330..1526 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:01 Download gff for
BO09573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 324..1524 | 10..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:48 Download gff for
BO09573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1806-RA | 330..1526 | 17..1215 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:48 Download gff for
BO09573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12009632..12009782 | 1063..1215 | 98 | | Plus |
X | 12008770..12008896 | 452..578 | 100 | -> | Plus |
X | 12009241..12009572 | 731..1062 | 100 | -> | Plus |
X | 12009023..12009174 | 579..730 | 100 | -> | Plus |
X | 12008270..12008704 | 17..451 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:47 Download gff for
BO09573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11903056..11903207 | 579..730 | 100 | -> | Plus |
arm_X | 11902803..11902929 | 452..578 | 100 | -> | Plus |
arm_X | 11902303..11902737 | 17..451 | 100 | -> | Plus |
arm_X | 11903274..11903605 | 731..1062 | 100 | -> | Plus |
arm_X | 11903665..11903815 | 1063..1215 | 98 | | Plus |
BO09573.pep Sequence
Translation from 16 to 1231
> BO09573.pep
MPVQQVRPVSTYDNLGVSQSRQLTAGMAGEPETEVEVELNGSHTSHSIAA
VKAALNDAKSKFFGINNYESPMASKSAAVTTIAKPEPRYQNVPQRDELPA
VAAPDPPAQPAQPTAPVSDHSRALRYATTYEQIPLSDMEAPQASQAVYMS
TTVPQNMKGMKIAGRHTPTRNSLRHSRMIVVNHKNHDSLQATRNLNISRQ
LLVMQLAVGLFIVGLAVWILILAPNASILINPYLSGLSLLLASIAGLILL
RRDHKITEHRPQTNSCYKVLLAESYVFTGLALIFCCLALVCAAIEFAELI
SSADGECGPTSSSLLSYHNCTCLAAGEVVANYSSEAPMAFAVGQEEASQN
DGCAELRIEWKYLLAFSMALNTLGIVATFLYITLFICCHRKREHFYTSVA
SFLDH
BO09573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1806-PB | 399 | CG1806-PB | 1..399 | 1..399 | 2039 | 100 | Plus |
CG1806-PA | 399 | CG1806-PA | 1..399 | 1..399 | 2039 | 100 | Plus |