Clone BO09573 Report

Search the DGRC for BO09573

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG1806-RA
Protein status:BO09573.pep: validated full length
Sequenced Size:1231

Clone Sequence Records

BO09573.3prime Sequence

937 bp (859 high quality bases) assembled on 2006-01-23

> BO09573.3prime
ATGGTCTAGAAAGCTTGCCACAGACGTGTAAAAGTGTTCTCGCTTGCGGT
GGCAACAAATAAATAACGTTATGTATAAGAATGTTGCAACAATGCCCAAA
GTGTTGAGCGCCATGGAGAAGGCGAGCAGATACTTCCATTCGATCCGAAG
CTCGGCACAACCATCGTTTTGTGACGCCTCCTCCTGACCAACTGCAAATG
CCATTGGAGCCTCGGAGGAGTAGTTGGCCACCACCTCACCTGCCGCCAAG
CAGGTGCAATTGTGATAGCTAAGCAATGAGCTCGATGTTGGTCCACATTC
TCCGTCTGCGGATGAGATGAGCTCCGCGAACTCAATTGCCGCACAGACGA
GGGCCAAGCAGCAGAAGATCAACGCCAGGCCAGTGAACACATACGACTCG
GCCAGCAGGACCTTGTAGCAACTATTGGTCTGCGGTCTGTGCTCCGTGAT
CTTGTGATCCCTTCGCAGCAGTATGAGCCCCGCAATGCTGGCCAATAGCA
GCGACAATCCACTCAGATACGGATTGATCAATATGGACGCATTGGGGGCT
AGGATTAGTATCCAAACGGCAAGACCCACGATGAACAGGCCCACAGCTAA
TTGCATAACCAGAAGCTGGCGAGATATATTCAGATTCCTGGTGGCCTGGA
GACTGTCGTGGTTTTTGTGATTGACAACGATCATGCGGCTGTGCCTGAGG
CTGTTGCGAGTTGGCGTATGTCGTCCGGCGATCTTCATGCCCTTCATGTT
CTGCGGCACTGTGGTGCTCATGTAGACGGCCTGCGATGCCTGCGGTGCTT
CCATGTCGCTGAGTGGAATCTGTTCGTAGGTGGTCGCATAGCGCAGTGCC
CTACTATGATCGCTAACTGGAGCCGTCNGCTGTGCTGGTTGCGCTGGAAG
ATCGGGAGCAGCCACTGCCGGCAGTTCGTCGCGTTGC

BO09573.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-PA 1200 CG1806-RA 279..1197 937..19 4551 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RB 1582 CG1806-RB 542..1460 937..19 4569 99.8 Minus
CG1806-RA 1648 CG1806-RA 608..1526 937..19 4569 99.8 Minus
CG1492-RB 2289 CG1492-RB 2218..2289 19..90 360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12009240..12009572 502..170 1665 100 Minus
X 23542271 X 12008548..12008705 937..780 764 98.7 Minus
X 23542271 X 12009023..12009174 653..502 760 100 Minus
X 23542271 X 12009632..12009782 169..19 755 100 Minus
X 23542271 X 12008768..12008898 782..652 655 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:06:06 has no hits.

BO09573.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:40 Download gff for BO09573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-PA 279..1200 18..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:06 Download gff for BO09573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-PA 279..1200 18..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:26:53 Download gff for BO09573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 608..1526 19..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:36:54 Download gff for BO09573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 608..1526 19..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:36:54 Download gff for BO09573.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12008548..12008704 781..937 98 -> Minus
X 12008770..12008896 654..780 100 -> Minus
X 12009023..12009174 502..653 100 -> Minus
X 12009241..12009572 170..501 100 -> Minus
X 12009632..12009782 19..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:26:53 Download gff for BO09573.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11902581..11902737 781..937 98 -> Minus
arm_X 11902803..11902929 654..780 100 -> Minus
arm_X 11903056..11903207 502..653 100 -> Minus
arm_X 11903274..11903605 170..501 100 -> Minus
arm_X 11903665..11903815 19..169 100   Minus

BO09573.5prime Sequence

903 bp (828 high quality bases) assembled on 2006-01-23

> BO09573.5prime
GAAGTTATCAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCT
ACGACAACTTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCT
GGCGAACCGGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAG
CCATAGCATAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGT
TCTTCGGCATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCA
GTGACGACGATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACG
CGACGAACTGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCAC
AGCCGACGGCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACC
ACCTACGAACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCA
GGCCGTCTACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGA
TCGCCGGACGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATG
ATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCT
GAATATATCTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCA
TCGTGGGTCTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATA
TTGATCAATCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGC
GGGGCTCATACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGC
AGACCAATAGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACT
GGCCTGGCGTTGATCTTCTGCTGCTTGGCCCTCGTCTGTGCGGGCATTGA
GTT

BO09573.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-PA 1200 CG1806-RA 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RB 1582 CG1806-RB 263..1150 16..903 4410 99.8 Plus
CG1806-RA 1648 CG1806-RA 329..1216 16..903 4410 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12008269..12008705 16..452 2185 100 Plus
X 23542271 X 12009240..12009413 730..903 840 98.9 Plus
X 23542271 X 12009023..12009174 579..730 760 100 Plus
X 23542271 X 12008768..12008898 450..580 655 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:11:07 has no hits.

BO09573.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:41 Download gff for BO09573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:08 Download gff for BO09573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:08:29 Download gff for BO09573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 326..1216 10..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:31 Download gff for BO09573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 326..1216 10..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:03:31 Download gff for BO09573.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12008266..12008704 10..451 99 -> Plus
X 12008770..12008896 452..578 100 -> Plus
X 12009023..12009174 579..730 100 -> Plus
X 12009241..12009413 731..903 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:08:29 Download gff for BO09573.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11902803..11902929 452..578 100 -> Plus
arm_X 11903056..11903207 579..730 100 -> Plus
arm_X 11902299..11902737 10..451 99 -> Plus
arm_X 11903274..11903446 731..903 98   Plus

BO09573.complete Sequence

1231 bp (1231 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631537

> BO09573.complete
GAAGTTATCAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCT
ACGACAACTTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCT
GGCGAACCGGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAG
CCATAGCATAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGT
TCTTCGGCATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCA
GTGACGACGATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACG
CGACGAACTGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCAC
AGCCGACGGCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACC
ACCTACGAACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCA
GGCCGTCTACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGA
TCGCCGGACGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATG
ATCGTTGTCAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCT
GAATATATCTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCA
TCGTGGGTCTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATA
TTGATCAATCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGC
GGGGCTCATACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGC
AGACCAATAGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACT
GGCCTGGCGTTGATCTTCTGCTGCTTGGCCCTCGTCTGTGCGGCAATTGA
GTTCGCGGAGCTCATCTCATCCGCAGACGGAGAATGTGGACCAACATCGA
GCTCATTGCTTAGCTATCACAATTGCACCTGCTTGGCGGCAGGTGAGGTG
GTGGCCAACTACTCCTCCGAGGCTCCAATGGCATTTGCAGTTGGTCAGGA
GGAGGCGTCACAAAACGATGGTTGTGCCGAGCTTCGGATCGAATGGAAGT
ATCTGCTCGCCTTCTCCATGGCGCTCAACACTTTGGGCATTGTTGCAACA
TTCTTATACATAACGTTATTTATTTGTTGCCACCGCAAGCGAGAACACTT
TTACACGTCTGTGGCAAGCTTTCTAGACCAT

BO09573.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RB 1200 CG1806-PB 1..1197 17..1213 5985 100 Plus
CG1806-RA 1200 CG1806-PA 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-RB 1582 CG1806-RB 263..1460 16..1213 5990 100 Plus
CG1806-RA 1648 CG1806-RA 329..1526 16..1213 5990 100 Plus
CG1492-RB 2289 CG1492-RB 2218..2289 1213..1142 360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12008269..12008705 16..452 2185 100 Plus
X 23542271 X 12009240..12009572 730..1062 1665 100 Plus
X 23542271 X 12009023..12009174 579..730 760 100 Plus
X 23542271 X 12009632..12009782 1063..1213 755 100 Plus
X 23542271 X 12008768..12008898 450..580 655 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:25:53 has no hits.

BO09573.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:00 Download gff for BO09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 1..1200 17..1214 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:24 Download gff for BO09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 324..1524 10..1213 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:47 Download gff for BO09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 330..1526 17..1215 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:01 Download gff for BO09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 324..1524 10..1213 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:48 Download gff for BO09573.complete
Subject Subject Range Query Range Percent Splice Strand
CG1806-RA 330..1526 17..1215 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:48 Download gff for BO09573.complete
Subject Subject Range Query Range Percent Splice Strand
X 12009632..12009782 1063..1215 98   Plus
X 12008770..12008896 452..578 100 -> Plus
X 12009241..12009572 731..1062 100 -> Plus
X 12009023..12009174 579..730 100 -> Plus
X 12008270..12008704 17..451 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:47 Download gff for BO09573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11903056..11903207 579..730 100 -> Plus
arm_X 11902803..11902929 452..578 100 -> Plus
arm_X 11902303..11902737 17..451 100 -> Plus
arm_X 11903274..11903605 731..1062 100 -> Plus
arm_X 11903665..11903815 1063..1215 98   Plus

BO09573.pep Sequence

Translation from 16 to 1231

> BO09573.pep
MPVQQVRPVSTYDNLGVSQSRQLTAGMAGEPETEVEVELNGSHTSHSIAA
VKAALNDAKSKFFGINNYESPMASKSAAVTTIAKPEPRYQNVPQRDELPA
VAAPDPPAQPAQPTAPVSDHSRALRYATTYEQIPLSDMEAPQASQAVYMS
TTVPQNMKGMKIAGRHTPTRNSLRHSRMIVVNHKNHDSLQATRNLNISRQ
LLVMQLAVGLFIVGLAVWILILAPNASILINPYLSGLSLLLASIAGLILL
RRDHKITEHRPQTNSCYKVLLAESYVFTGLALIFCCLALVCAAIEFAELI
SSADGECGPTSSSLLSYHNCTCLAAGEVVANYSSEAPMAFAVGQEEASQN
DGCAELRIEWKYLLAFSMALNTLGIVATFLYITLFICCHRKREHFYTSVA
SFLDH

BO09573.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1806-PB 399 CG1806-PB 1..399 1..399 2039 100 Plus
CG1806-PA 399 CG1806-PA 1..399 1..399 2039 100 Plus