Clone BO09575 Report

Search the DGRC for BO09575

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptSpn88Eb-RA
Protein status:BO09575.pep: validated full length
Sequenced Size:1312

Clone Sequence Records

BO09575.3prime Sequence

930 bp (845 high quality bases) assembled on 2006-01-23

> BO09575.3prime
ATGGTCTAGAAAGCTTGCGTGCTGCATTTGCCTGGGATCGCTGTAGACGC
CCGCAAAGAGAATCGTGTCTACCTTTTCATCATAGATAAGAAACACGAAC
GGGTGGTTGCAGTTGAATTTGGTGGGATCGGGCTGCCTGCTGGATCGGCT
GACCAAGAGGATGGTGGCCGCTGCCGCAGTGCTGCCCACTTCGTCCACTT
TGATCTTGGCCAGATGTTGGGCGTCATCGATGACAAGGGAAATGGGATCG
GCAGTCAGGTCTCCAAAGGTGGCGTTTCTCGTGAACATTGTGTTCACTCC
CATTAAGCTGAGGATAGGGGTCAGTTCCAGGCGCTGCTCAAACTGGAACT
TGGGCAGCGACAACTCGATCTTCTGCGGCAATGCCCGTTCGAACCATTTC
TTAACGGAATCGGCATTTAGCCGGGATATGACACGGTTAAGACTGATTTT
GTTGGAGTTCGGCAGAATGATAATCATGGAGATATCGGATTTGGACTCGG
GGGTGGAAATGTGCGTCTCCTTCGACTTGTATATGGTGCGGTAGGGCAGC
TTGATGATCTGCGATTGCAAGCCCTCATCGATGGTCATCTTGAAGGCGCC
CGTCTTGTGCATCATGTAAACCATTTCCTGCTCACGCTCGTTAATGAAGA
ATGGCTTCAAGGCGGTCTCCTCCACCTTGAACTGGCTGAGCCACTGGCCC
TTCATGTAGGCGGCGTTGGCCAGCACCAACATGGTGTGGGGTGTGATCTC
CTCGGAGCTGAGCATGTCGCGGATCTGGTTGTGCGTCTTATCGGCTATCC
AGTCGTTAATTTCCTTTAGGCCAGTCTCCGGATCATTCTTGAAATCCAAT
TCTTTGGTTGCCCCGTAGAGTAAAGTGTTGAATTTTGTTGGAAACATTTA
TTGTCCTGTCGACGAAAAATCTGTTCGCAA

BO09575.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6687-PA 1281 CG6687-RA 412..1278 885..19 4335 100 Minus
CG6687-PA 1281 CG6687-RA 369..414 929..884 205 97.8 Minus
CG18525-PA 1284 Spn5-RA 574..627 729..676 145 90.7 Minus
CG18525-PB 1284 Spn5-RB 574..627 729..676 145 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-RA 1431 CG6687-RA 460..1369 929..19 4515 99.8 Minus
Spn88Ea-RB 1518 CG18525-RB 597..748 816..665 295 80.4 Minus
Spn88Ea-RA 1521 CG18525-RA 600..751 816..665 295 80.4 Minus
Spn88Ea-RB 1518 CG18525-RB 1053..1255 360..155 265 76.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15207124..15207736 316..929 3005 99.7 Plus
3R 32079331 3R 15206765..15207061 19..315 1485 100 Plus
3R 32079331 3R 15203899..15204050 665..816 295 79.6 Plus
3R 32079331 3R 15203332..15203409 155..232 195 83.3 Plus
Blast to na_te.dros performed on 2015-02-03 08:47:57 has no hits.

BO09575.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:44 Download gff for BO09575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6687-PA 370..1281 18..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:12 Download gff for BO09575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6687-PA 370..1281 18..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:40 Download gff for BO09575.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 461..1369 19..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:55:59 Download gff for BO09575.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 461..1369 19..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:55:59 Download gff for BO09575.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15206765..15207061 19..315 100 <- Plus
3R 15207124..15207735 316..928 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:40 Download gff for BO09575.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11032487..11032783 19..315 100 <- Plus
arm_3R 11032846..11033457 316..928 99   Plus

BO09575.5prime Sequence

907 bp (851 high quality bases) assembled on 2006-01-23

> BO09575.5prime
GAAGTTATCAGTCGACATGCACACCTTCAGTTTGGTCCTGTTGGCCCTCC
TTCCCGTAGTAACCATAGCTGCCTTGGACAAGCCGGAGCTATCATTTCTA
AATGAATTCTCACAAATTTTCAAGGGAGAACGAGACTTCTCCTTAGCATT
AATGAAACAGATCCGAGAGATATATCCCAGCGGCAATCTGTTCTTCTCGC
CGTTCAGCACCTACAACGCCCTGCTCCTCGCCTACTTCAGTTCCTCCGAG
CAGACGGAACGTGAGCTGGCCCAGGCACTGAACCTGGGATGGGCATTAAA
CAAACAGCAGGTCCTAGTTTCGTACACGTTGGCACAGAGGCAGGACGAAT
TTCGTTGGCGCCAAAGTCCCATGGAGCTCTCGTCTGCGAACAGAATTTTC
GTCGACAGGACAATAAATGTTTCCAACAAATTCAACACTTTACTCTACGG
GGCAACCAAAGAATTGGATTTCAAGAATGATCCGGAGACTGGCCTAAAGG
AAATTAACGACTGGATAGCCGATAAGACGCACAACCAGATCCGCGACATG
CTCAGCTCCGAGGAGATCACACCCCACACCATGTTGGTGCTGGCCAACGC
CGCCTACATGAAGGGCCAGTGGCTCAGCCAGTTCAAGGTGGAGGAGACCG
CCTTGAAGCCATTCTTCATTAACGAGCGTGAGCAGGAAATGGTTTACATG
ATGCACAAGACGGGCGCCTTCAAGATGACCATCGATGAGGGCTTGCAATC
GCAGATCATCAAGCTGCCCTACCGCACCATATACAAGTCGAAGGAGACGC
ACATTTCCACCCCCGAGTCCAAATCCGATATCTCCATGATTATCATTCTG
CCGAANCTCCAACAAATCAGTCTTAACCGTGTCATATCCCGGGCTAATGC
CGATTCC

BO09575.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6687-PA 1281 CG6687-RA 1..839 17..855 4195 100 Plus
CG6687-PA 1281 CG6687-RA 848..876 864..892 145 100 Plus
CG18525-PA 1284 Spn5-RA 574..627 584..637 145 90.7 Plus
CG18525-PB 1284 Spn5-RB 574..627 584..637 145 90.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-RA 1431 CG6687-RA 92..982 17..907 4365 99.6 Plus
Spn88Ea-RB 1518 CG18525-RB 597..748 497..648 295 80.4 Plus
Spn88Ea-RA 1521 CG18525-RA 600..751 497..648 295 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15207214..15208104 907..17 4324 99 Minus
3R 32079331 3R 15203899..15204050 648..497 295 79.6 Minus
Blast to na_te.dros performed on 2015-02-10 21:13:34 has no hits.

BO09575.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:45 Download gff for BO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6687-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:14 Download gff for BO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6687-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:32 Download gff for BO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 81..982 9..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:41 Download gff for BO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 81..982 9..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:41 Download gff for BO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15207214..15208115 9..907 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:32 Download gff for BO09575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11032936..11033837 9..907 99   Minus

BO09575.complete Sequence

1312 bp (1312 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631538

> BO09575.complete
GAAGTTATCAGTCGACATGCACACCTTCAGTTTGGTCCTGTTGGCCCTCC
TTCCCGTAGTAACCATAGCTGCCTTGGACAAGCCGGAGCTATCATTTCTA
AATGAATTCTCACAAATTTTCAAGGGAGAACGAGACTTCTCCTTAGCATT
AATGAAACAGATCCGAGAGATATATCCCAGCGGCAATCTGTTCTTCTCGC
CGTTCAGCACCTACAACGCCCTGCTCCTCGCCTACTTCAGTTCCTCCGAG
CAGACGGAACGTGAGCTGGCCCAGGCACTGAACCTGGGATGGGCATTAAA
CAAACAGCAGGTCCTAGTTTCGTACACGTTGGCACAGAGGCAGGACGAAT
TTCGTTGGCGCCAAAGTCCCATGGAGCTCTCGTCTGCGAACAGAATTTTC
GTCGACAGGACAATAAATGTTTCCAACAAATTCAACACTTTACTCTACGG
GGCAACCAAAGAATTGGATTTCAAGAATGATCCGGAGACTGGCCTAAAGG
AAATTAACGACTGGATAGCCGATAAGACGCACAACCAGATCCGCGACATG
CTCAGCTCCGAGGAGATCACACCCCACACCATGTTGGTGCTGGCCAACGC
CGCCTACATGAAGGGCCAGTGGCTCAGCCAGTTCAAGGTGGAGGAGACCG
CCTTGAAGCCATTCTTCATTAACGAGCGTGAGCAGGAAATGGTTTACATG
ATGCACAAGACGGGCGCCTTCAAGATGACCATCGATGAGGGCTTGCAATC
GCAGATCATCAAGCTGCCCTACCGCACCATATACAAGTCGAAGGAGACGC
ACATTTCCACCCCCGAGTCCAAATCCGATATCTCCATGATTATCATTCTG
CCGAACTCCAACAAAATCAGTCTTAACCGTGTCATATCCCGGCTAAATGC
CGATTCCGTTAAGAAATGGTTCGAACGGGCATTGCCGCAGAAGATCGAGT
TGTCGCTGCCCAAGTTCCAGTTTGAGCAGCGCCTGGAACTGACCCCTATC
CTCAGCTTAATGGGAGTGAACACAATGTTCACGAGAAACGCCACCTTTGG
AGACCTGACTGCCGATCCCATTTCCCTTGTCATCGATGACGCCCAACATC
TGGCCAAGATCAAAGTGGACGAAGTGGGCAGCACTGCGGCAGCGGCCACC
ATCCTCTTGGTCAGCCGATCCAGCAGGCAGCCCGATCCCACCAAATTCAA
CTGCAACCACCCGTTCGTGTTTCTTATCTATGATGAAAAGGTAGACACGA
TTCTCTTTGCGGGCGTCTACAGCGATCCCAGGCAAATGCAGCACGCAAGC
TTTCTAGACCAT

BO09575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-RA 1281 CG6687-PA 1..1278 17..1294 6390 100 Plus
Spn88Ea-RB 1284 CG18525-PB 487..638 497..648 295 79.6 Plus
Spn88Ea-RA 1284 CG18525-PA 487..638 497..648 295 79.6 Plus
Spn88Ea-RB 1284 CG18525-PB 1068..1145 1081..1158 195 83.3 Plus
Spn88Ea-RB 1284 CG18525-PB 943..1020 953..1030 180 82.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-RA 1431 CG6687-RA 92..1369 17..1294 6390 100 Plus
Spn88Ea-RB 1518 CG18525-RB 597..748 497..648 295 79.6 Plus
Spn88Ea-RA 1521 CG18525-RA 600..751 497..648 295 79.6 Plus
Spn88Ea-RB 1518 CG18525-RB 1178..1255 1081..1158 195 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15207124..15208104 997..17 4905 100 Minus
3R 32079331 3R 15206765..15207061 1294..998 1485 100 Minus
3R 32079331 3R 15203899..15204050 648..497 295 79.6 Minus
3R 32079331 3R 15203332..15203409 1158..1081 195 83.3 Minus
Blast to na_te.dros performed on 2014-11-27 15:56:27 has no hits.

BO09575.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:15 Download gff for BO09575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6687-RA 1..1281 17..1295 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:19 Download gff for BO09575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6687-RA 81..1369 9..1294 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:15 Download gff for BO09575.complete
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 92..1369 17..1296 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:15 Download gff for BO09575.complete
Subject Subject Range Query Range Percent Splice Strand
CG6687-RA 81..1369 9..1294 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:22 Download gff for BO09575.complete
Subject Subject Range Query Range Percent Splice Strand
Spn88Eb-RA 92..1369 17..1296 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:22 Download gff for BO09575.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15206763..15207061 998..1296 99 <- Minus
3R 15207124..15208104 17..997 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:15 Download gff for BO09575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11032485..11032783 998..1296 99 <- Minus
arm_3R 11032846..11033826 17..997 100   Minus

BO09575.pep Sequence

Translation from 16 to 1312

> BO09575.pep
MHTFSLVLLALLPVVTIAALDKPELSFLNEFSQIFKGERDFSLALMKQIR
EIYPSGNLFFSPFSTYNALLLAYFSSSEQTERELAQALNLGWALNKQQVL
VSYTLAQRQDEFRWRQSPMELSSANRIFVDRTINVSNKFNTLLYGATKEL
DFKNDPETGLKEINDWIADKTHNQIRDMLSSEEITPHTMLVLANAAYMKG
QWLSQFKVEETALKPFFINEREQEMVYMMHKTGAFKMTIDEGLQSQIIKL
PYRTIYKSKETHISTPESKSDISMIIILPNSNKISLNRVISRLNADSVKK
WFERALPQKIELSLPKFQFEQRLELTPILSLMGVNTMFTRNATFGDLTAD
PISLVIDDAQHLAKIKVDEVGSTAAAATILLVSRSSRQPDPTKFNCNHPF
VFLIYDEKVDTILFAGVYSDPRQMQHASFLDH

BO09575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Spn88Eb-PA 426 CG6687-PA 1..426 1..426 2165 100 Plus
Spn88Ea-PB 427 CG18525-PB 1..426 1..425 1079 49.5 Plus
Spn88Ea-PA 427 CG18525-PA 1..426 1..425 1079 49.5 Plus
Spn42Da-PG 379 CG9453-PG 16..374 41..416 399 29.9 Plus
Spn42Da-PD 411 CG9453-PD 48..406 41..416 399 29.9 Plus