Clone Sequence Records
BO09575.3prime Sequence
930 bp (845 high quality bases) assembled on 2006-01-23
> BO09575.3prime
ATGGTCTAGAAAGCTTGCGTGCTGCATTTGCCTGGGATCGCTGTAGACGC
CCGCAAAGAGAATCGTGTCTACCTTTTCATCATAGATAAGAAACACGAAC
GGGTGGTTGCAGTTGAATTTGGTGGGATCGGGCTGCCTGCTGGATCGGCT
GACCAAGAGGATGGTGGCCGCTGCCGCAGTGCTGCCCACTTCGTCCACTT
TGATCTTGGCCAGATGTTGGGCGTCATCGATGACAAGGGAAATGGGATCG
GCAGTCAGGTCTCCAAAGGTGGCGTTTCTCGTGAACATTGTGTTCACTCC
CATTAAGCTGAGGATAGGGGTCAGTTCCAGGCGCTGCTCAAACTGGAACT
TGGGCAGCGACAACTCGATCTTCTGCGGCAATGCCCGTTCGAACCATTTC
TTAACGGAATCGGCATTTAGCCGGGATATGACACGGTTAAGACTGATTTT
GTTGGAGTTCGGCAGAATGATAATCATGGAGATATCGGATTTGGACTCGG
GGGTGGAAATGTGCGTCTCCTTCGACTTGTATATGGTGCGGTAGGGCAGC
TTGATGATCTGCGATTGCAAGCCCTCATCGATGGTCATCTTGAAGGCGCC
CGTCTTGTGCATCATGTAAACCATTTCCTGCTCACGCTCGTTAATGAAGA
ATGGCTTCAAGGCGGTCTCCTCCACCTTGAACTGGCTGAGCCACTGGCCC
TTCATGTAGGCGGCGTTGGCCAGCACCAACATGGTGTGGGGTGTGATCTC
CTCGGAGCTGAGCATGTCGCGGATCTGGTTGTGCGTCTTATCGGCTATCC
AGTCGTTAATTTCCTTTAGGCCAGTCTCCGGATCATTCTTGAAATCCAAT
TCTTTGGTTGCCCCGTAGAGTAAAGTGTTGAATTTTGTTGGAAACATTTA
TTGTCCTGTCGACGAAAAATCTGTTCGCAA
BO09575.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6687-PA | 1281 | CG6687-RA | 412..1278 | 885..19 | 4335 | 100 | Minus |
CG6687-PA | 1281 | CG6687-RA | 369..414 | 929..884 | 205 | 97.8 | Minus |
CG18525-PA | 1284 | Spn5-RA | 574..627 | 729..676 | 145 | 90.7 | Minus |
CG18525-PB | 1284 | Spn5-RB | 574..627 | 729..676 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Eb-RA | 1431 | CG6687-RA | 460..1369 | 929..19 | 4515 | 99.8 | Minus |
Spn88Ea-RB | 1518 | CG18525-RB | 597..748 | 816..665 | 295 | 80.4 | Minus |
Spn88Ea-RA | 1521 | CG18525-RA | 600..751 | 816..665 | 295 | 80.4 | Minus |
Spn88Ea-RB | 1518 | CG18525-RB | 1053..1255 | 360..155 | 265 | 76.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15207124..15207736 | 316..929 | 3005 | 99.7 | Plus |
3R | 32079331 | 3R | 15206765..15207061 | 19..315 | 1485 | 100 | Plus |
3R | 32079331 | 3R | 15203899..15204050 | 665..816 | 295 | 79.6 | Plus |
3R | 32079331 | 3R | 15203332..15203409 | 155..232 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:47:57 has no hits.
BO09575.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:44 Download gff for
BO09575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6687-PA | 370..1281 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:12 Download gff for
BO09575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6687-PA | 370..1281 | 18..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:40 Download gff for
BO09575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Eb-RA | 461..1369 | 19..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:55:59 Download gff for
BO09575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Eb-RA | 461..1369 | 19..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:55:59 Download gff for
BO09575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15206765..15207061 | 19..315 | 100 | <- | Plus |
3R | 15207124..15207735 | 316..928 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:40 Download gff for
BO09575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11032487..11032783 | 19..315 | 100 | <- | Plus |
arm_3R | 11032846..11033457 | 316..928 | 99 | | Plus |
BO09575.5prime Sequence
907 bp (851 high quality bases) assembled on 2006-01-23
> BO09575.5prime
GAAGTTATCAGTCGACATGCACACCTTCAGTTTGGTCCTGTTGGCCCTCC
TTCCCGTAGTAACCATAGCTGCCTTGGACAAGCCGGAGCTATCATTTCTA
AATGAATTCTCACAAATTTTCAAGGGAGAACGAGACTTCTCCTTAGCATT
AATGAAACAGATCCGAGAGATATATCCCAGCGGCAATCTGTTCTTCTCGC
CGTTCAGCACCTACAACGCCCTGCTCCTCGCCTACTTCAGTTCCTCCGAG
CAGACGGAACGTGAGCTGGCCCAGGCACTGAACCTGGGATGGGCATTAAA
CAAACAGCAGGTCCTAGTTTCGTACACGTTGGCACAGAGGCAGGACGAAT
TTCGTTGGCGCCAAAGTCCCATGGAGCTCTCGTCTGCGAACAGAATTTTC
GTCGACAGGACAATAAATGTTTCCAACAAATTCAACACTTTACTCTACGG
GGCAACCAAAGAATTGGATTTCAAGAATGATCCGGAGACTGGCCTAAAGG
AAATTAACGACTGGATAGCCGATAAGACGCACAACCAGATCCGCGACATG
CTCAGCTCCGAGGAGATCACACCCCACACCATGTTGGTGCTGGCCAACGC
CGCCTACATGAAGGGCCAGTGGCTCAGCCAGTTCAAGGTGGAGGAGACCG
CCTTGAAGCCATTCTTCATTAACGAGCGTGAGCAGGAAATGGTTTACATG
ATGCACAAGACGGGCGCCTTCAAGATGACCATCGATGAGGGCTTGCAATC
GCAGATCATCAAGCTGCCCTACCGCACCATATACAAGTCGAAGGAGACGC
ACATTTCCACCCCCGAGTCCAAATCCGATATCTCCATGATTATCATTCTG
CCGAANCTCCAACAAATCAGTCTTAACCGTGTCATATCCCGGGCTAATGC
CGATTCC
BO09575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6687-PA | 1281 | CG6687-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
CG6687-PA | 1281 | CG6687-RA | 848..876 | 864..892 | 145 | 100 | Plus |
CG18525-PA | 1284 | Spn5-RA | 574..627 | 584..637 | 145 | 90.7 | Plus |
CG18525-PB | 1284 | Spn5-RB | 574..627 | 584..637 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Eb-RA | 1431 | CG6687-RA | 92..982 | 17..907 | 4365 | 99.6 | Plus |
Spn88Ea-RB | 1518 | CG18525-RB | 597..748 | 497..648 | 295 | 80.4 | Plus |
Spn88Ea-RA | 1521 | CG18525-RA | 600..751 | 497..648 | 295 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15207214..15208104 | 907..17 | 4324 | 99 | Minus |
3R | 32079331 | 3R | 15203899..15204050 | 648..497 | 295 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:13:34 has no hits.
BO09575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:45 Download gff for
BO09575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6687-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:14 Download gff for
BO09575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6687-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:23:32 Download gff for
BO09575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Eb-RA | 81..982 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:41 Download gff for
BO09575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Eb-RA | 81..982 | 9..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:41 Download gff for
BO09575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15207214..15208115 | 9..907 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:23:32 Download gff for
BO09575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11032936..11033837 | 9..907 | 99 | | Minus |
BO09575.complete Sequence
1312 bp (1312 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631538
> BO09575.complete
GAAGTTATCAGTCGACATGCACACCTTCAGTTTGGTCCTGTTGGCCCTCC
TTCCCGTAGTAACCATAGCTGCCTTGGACAAGCCGGAGCTATCATTTCTA
AATGAATTCTCACAAATTTTCAAGGGAGAACGAGACTTCTCCTTAGCATT
AATGAAACAGATCCGAGAGATATATCCCAGCGGCAATCTGTTCTTCTCGC
CGTTCAGCACCTACAACGCCCTGCTCCTCGCCTACTTCAGTTCCTCCGAG
CAGACGGAACGTGAGCTGGCCCAGGCACTGAACCTGGGATGGGCATTAAA
CAAACAGCAGGTCCTAGTTTCGTACACGTTGGCACAGAGGCAGGACGAAT
TTCGTTGGCGCCAAAGTCCCATGGAGCTCTCGTCTGCGAACAGAATTTTC
GTCGACAGGACAATAAATGTTTCCAACAAATTCAACACTTTACTCTACGG
GGCAACCAAAGAATTGGATTTCAAGAATGATCCGGAGACTGGCCTAAAGG
AAATTAACGACTGGATAGCCGATAAGACGCACAACCAGATCCGCGACATG
CTCAGCTCCGAGGAGATCACACCCCACACCATGTTGGTGCTGGCCAACGC
CGCCTACATGAAGGGCCAGTGGCTCAGCCAGTTCAAGGTGGAGGAGACCG
CCTTGAAGCCATTCTTCATTAACGAGCGTGAGCAGGAAATGGTTTACATG
ATGCACAAGACGGGCGCCTTCAAGATGACCATCGATGAGGGCTTGCAATC
GCAGATCATCAAGCTGCCCTACCGCACCATATACAAGTCGAAGGAGACGC
ACATTTCCACCCCCGAGTCCAAATCCGATATCTCCATGATTATCATTCTG
CCGAACTCCAACAAAATCAGTCTTAACCGTGTCATATCCCGGCTAAATGC
CGATTCCGTTAAGAAATGGTTCGAACGGGCATTGCCGCAGAAGATCGAGT
TGTCGCTGCCCAAGTTCCAGTTTGAGCAGCGCCTGGAACTGACCCCTATC
CTCAGCTTAATGGGAGTGAACACAATGTTCACGAGAAACGCCACCTTTGG
AGACCTGACTGCCGATCCCATTTCCCTTGTCATCGATGACGCCCAACATC
TGGCCAAGATCAAAGTGGACGAAGTGGGCAGCACTGCGGCAGCGGCCACC
ATCCTCTTGGTCAGCCGATCCAGCAGGCAGCCCGATCCCACCAAATTCAA
CTGCAACCACCCGTTCGTGTTTCTTATCTATGATGAAAAGGTAGACACGA
TTCTCTTTGCGGGCGTCTACAGCGATCCCAGGCAAATGCAGCACGCAAGC
TTTCTAGACCAT
BO09575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Eb-RA | 1281 | CG6687-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Spn88Ea-RB | 1284 | CG18525-PB | 487..638 | 497..648 | 295 | 79.6 | Plus |
Spn88Ea-RA | 1284 | CG18525-PA | 487..638 | 497..648 | 295 | 79.6 | Plus |
Spn88Ea-RB | 1284 | CG18525-PB | 1068..1145 | 1081..1158 | 195 | 83.3 | Plus |
Spn88Ea-RB | 1284 | CG18525-PB | 943..1020 | 953..1030 | 180 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Eb-RA | 1431 | CG6687-RA | 92..1369 | 17..1294 | 6390 | 100 | Plus |
Spn88Ea-RB | 1518 | CG18525-RB | 597..748 | 497..648 | 295 | 79.6 | Plus |
Spn88Ea-RA | 1521 | CG18525-RA | 600..751 | 497..648 | 295 | 79.6 | Plus |
Spn88Ea-RB | 1518 | CG18525-RB | 1178..1255 | 1081..1158 | 195 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15207124..15208104 | 997..17 | 4905 | 100 | Minus |
3R | 32079331 | 3R | 15206765..15207061 | 1294..998 | 1485 | 100 | Minus |
3R | 32079331 | 3R | 15203899..15204050 | 648..497 | 295 | 79.6 | Minus |
3R | 32079331 | 3R | 15203332..15203409 | 1158..1081 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:56:27 has no hits.
BO09575.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:15 Download gff for
BO09575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6687-RA | 1..1281 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:19 Download gff for
BO09575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6687-RA | 81..1369 | 9..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:15 Download gff for
BO09575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Eb-RA | 92..1369 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:15 Download gff for
BO09575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6687-RA | 81..1369 | 9..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:22 Download gff for
BO09575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn88Eb-RA | 92..1369 | 17..1296 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:22 Download gff for
BO09575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15206763..15207061 | 998..1296 | 99 | <- | Minus |
3R | 15207124..15208104 | 17..997 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:15 Download gff for
BO09575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11032485..11032783 | 998..1296 | 99 | <- | Minus |
arm_3R | 11032846..11033826 | 17..997 | 100 | | Minus |
BO09575.pep Sequence
Translation from 16 to 1312
> BO09575.pep
MHTFSLVLLALLPVVTIAALDKPELSFLNEFSQIFKGERDFSLALMKQIR
EIYPSGNLFFSPFSTYNALLLAYFSSSEQTERELAQALNLGWALNKQQVL
VSYTLAQRQDEFRWRQSPMELSSANRIFVDRTINVSNKFNTLLYGATKEL
DFKNDPETGLKEINDWIADKTHNQIRDMLSSEEITPHTMLVLANAAYMKG
QWLSQFKVEETALKPFFINEREQEMVYMMHKTGAFKMTIDEGLQSQIIKL
PYRTIYKSKETHISTPESKSDISMIIILPNSNKISLNRVISRLNADSVKK
WFERALPQKIELSLPKFQFEQRLELTPILSLMGVNTMFTRNATFGDLTAD
PISLVIDDAQHLAKIKVDEVGSTAAAATILLVSRSSRQPDPTKFNCNHPF
VFLIYDEKVDTILFAGVYSDPRQMQHASFLDH
BO09575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn88Eb-PA | 426 | CG6687-PA | 1..426 | 1..426 | 2165 | 100 | Plus |
Spn88Ea-PB | 427 | CG18525-PB | 1..426 | 1..425 | 1079 | 49.5 | Plus |
Spn88Ea-PA | 427 | CG18525-PA | 1..426 | 1..425 | 1079 | 49.5 | Plus |
Spn42Da-PG | 379 | CG9453-PG | 16..374 | 41..416 | 399 | 29.9 | Plus |
Spn42Da-PD | 411 | CG9453-PD | 48..406 | 41..416 | 399 | 29.9 | Plus |