Clone Sequence Records
BO09576.3prime Sequence
868 bp (769 high quality bases) assembled on 2006-01-23
> BO09576.3prime
ATGGTCTAGAAAGCTTGCGAAGTTGATGGGTTTGCCAAAGGCAGCTGCCA
CATTGGCCTCACGCAGGGCCTCGGAACATGTTGGATGCGCATGGCAAACG
CGGGCAACGTCCTCGGCAGCGGCTCCGTACTCCATGGCCAGCACAGCCTC
GTTAATGAGCTCGCCGGCACCAGGTCCGATAATATGGGTTCCCAGGATCT
TATCGGTGGCCTGGTCGGCCAGAACCTTGACGAAACCGTCGGTGTCGTTG
TTGGTCTTGGCACGAGAGTTGGCCAGGAAGGGGAACTTGCCCACCTTGTA
GGCAACACCCTCCTGCTTCAGTTGCTCCTCGCTCTTGCCAACCCACGCGA
CCTCGGGATGCGTGTAGACTACACTGGGCACGCAGTTGTAGTCGATGTGC
ACGTGGCCGCCGTTGATGCCCTCAATGGTGATGAGGCCCTCATCTTCAGC
CTTGTGCGCCAACATGGGTCCGTGGATGCAGTCGCCGATGGCGTAAATAT
TGGGCACCACAGTTTGGAAAGTGGCGTTGACGGGGATCCTGCCGCGGTCA
TCCTTAACAATGCCCACGGCCTCCAGACCCAAACCTTCGGTGTAGGGACG
ACGTCCAACACTGACCAGCAGGGCGTCGCACTGGATCTCCTCTTTCTCGC
CAGACTTGGCGTTCTCCACGGACACGGTGACGTTGTCGCCGCTGCGAGAG
GCAGCCGTCACCTTGGTGCCCAGCTTGAACTTAAGACCCTGCTTGGTGAG
CACCTTTTGGAACGTCTTGGAGACTTCGTTATCGATGCCCACGCCGCCGA
TCGTATCCATGAACTCAATGGCAGTGACCTCAGCGCCCAGACGCGACCAT
ACCGAACCCAGCTCCAGG
BO09576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7430-PA | 1515 | CG7430-RA | 663..1512 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7430-RB | 1903 | CG7430-RB | 824..1673 | 868..19 | 4250 | 100 | Minus |
CG7430-RA | 2252 | CG7430-RA | 944..1793 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17848230..17849016 | 868..82 | 3935 | 100 | Minus |
3L | 28110227 | 3L | 17849080..17849142 | 81..19 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:51:44 has no hits.
BO09576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:46 Download gff for
BO09576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-PA | 663..1515 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:15 Download gff for
BO09576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-PA | 663..1515 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:16:07 Download gff for
BO09576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 944..1803 | 9..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:18 Download gff for
BO09576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 944..1803 | 9..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:18 Download gff for
BO09576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17848230..17849016 | 82..868 | 100 | -> | Minus |
3L | 17849080..17849152 | 9..81 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:16:07 Download gff for
BO09576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17842180..17842252 | 9..81 | 94 | | Minus |
arm_3L | 17841330..17842116 | 82..868 | 100 | -> | Minus |
BO09576.5prime Sequence
777 bp (761 high quality bases) assembled on 2006-01-23
> BO09576.5prime
GAAGTTATCAGTCGACATGCAATTCACGCTCCGTCATGTTGTTTCGGCAG
TAGCCAAGACTCCTCTGCGCACCAATGCCGCCATTCTGGGTGCCCTCAAC
GCCCGCTGCTACTCCAGCACCCACGAGGCGGACATCGTGGTGATTGGCTC
CGGACCCGGTGGCTATGTCGCCGCCATCAAGGCCGCCCAGATGGGCATGA
AGACGGTCAGCGTGGAGAAGGAGGCAACTCTGGGCGGCACCTGCCTGAAT
GTTGGCTGCATTCCCTCAAAGGCGCTGCTGAACAACTCCCACTACTACCA
CATGGCCCACTCCGGTGATCTGGAGAAACGTGGTATTAGCTGCGGCAGCG
TTAGCCTGGATCTGGAGAAGCTTATGGGTCAAAAGTCCAACGCCGTGAAG
GCTTTGACCGGTGGCATTGCCATGCTTTTCAAGAAGAACAAGGTCACACA
GCTGACGGGCTTCGGCACCATCGTCAATCCCAACGAGGTGGAGGTTAAGA
AATCCGACGGCTCCACGGAGACTGTCAAGACCAAGAACATCCTCATCGCC
ACCGGCTCGGAGGTTACCCCCTTCCCTGGCATTGAAATCGACGAGGAAGT
TATTGTGAGCAGCACTGGCGCCCTGAAGCTGGCCAAGGTGCCCAAGCATC
TGGTTGTCATCGGCGCCGGTGTCATTGGCCTGGAGCTGGGTTCGGTATGG
TCGCGTCTGGGCGCTGAGGTCACTGCCATTGAGTTCATGGATACGATCGG
CGGCGTGGGCATCGATAACGAAGTCTC
BO09576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7430-PA | 1515 | CG7430-RA | 1..761 | 17..777 | 3805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7430-RB | 1903 | CG7430-RB | 161..922 | 16..777 | 3810 | 100 | Plus |
CG7430-RA | 2252 | CG7430-RA | 281..1042 | 16..777 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17847545..17848074 | 57..586 | 2650 | 100 | Plus |
3L | 28110227 | 3L | 17848138..17848328 | 587..777 | 955 | 100 | Plus |
3L | 28110227 | 3L | 17847196..17847238 | 16..58 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:11:20 has no hits.
BO09576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:47 Download gff for
BO09576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:16 Download gff for
BO09576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:11 Download gff for
BO09576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 277..1042 | 9..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:42:15 Download gff for
BO09576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 277..1042 | 9..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:42:15 Download gff for
BO09576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17847192..17847238 | 9..58 | 94 | -> | Plus |
3L | 17847547..17848074 | 59..586 | 100 | -> | Plus |
3L | 17848138..17848328 | 587..777 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:11 Download gff for
BO09576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17840292..17840338 | 9..58 | 94 | -> | Plus |
arm_3L | 17840647..17841174 | 59..586 | 100 | -> | Plus |
arm_3L | 17841238..17841428 | 587..777 | 100 | | Plus |
BO09576.complete Sequence
1546 bp (1546 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631539
> BO09576.complete
GAAGTTATCAGTCGACATGCAATTCACGCTCCGTCATGTTGTTTCGGCAG
TAGCCAAGACTCCTCTGCGCACCAATGCCGCCATTCTGGGTGCCCTCAAC
GCCCGCTGCTACTCCAGCACCCACGAGGCGGACATCGTGGTGATTGGCTC
CGGACCCGGTGGCTATGTCGCCGCCATCAAGGCCGCCCAGATGGGCATGA
AGACGGTCAGCGTGGAGAAGGAGGCAACTCTGGGCGGCACCTGCCTGAAT
GTTGGCTGCATTCCCTCAAAGGCGCTGCTGAACAACTCCCACTACTACCA
CATGGCCCACTCCGGTGATCTGGAGAAACGTGGTATTAGCTGCGGCAGCG
TTAGCCTGGATCTGGAGAAGCTTATGGGTCAAAAGTCCAACGCCGTGAAG
GCTTTGACCGGTGGCATTGCCATGCTTTTCAAGAAGAACAAGGTCACACA
GCTGACGGGCTTCGGCACCATCGTCAATCCCAACGAGGTGGAGGTTAAGA
AATCCGACGGCTCCACGGAGACTGTCAAGACCAAGAACATCCTCATCGCC
ACCGGCTCGGAGGTTACCCCCTTCCCTGGCATTGAAATCGACGAGGAAGT
TATTGTGAGCAGCACTGGCGCCCTGAAGCTGGCCAAGGTGCCCAAGCATC
TGGTTGTCATCGGCGCCGGTGTCATTGGCCTGGAGCTGGGTTCGGTATGG
TCGCGTCTGGGCGCTGAGGTCACTGCCATTGAGTTCATGGATACGATCGG
CGGCGTGGGCATCGATAACGAAGTCTCCAAGACGTTCCAAAAGGTGCTCA
CCAAGCAGGGTCTTAAGTTCAAGCTGGGCACCAAGGTGACGGCTGCCTCT
CGCAGCGGCGACAACGTCACCGTGTCCGTGGAGAACGCCAAGTCTGGCGA
GAAAGAGGAGATCCAGTGCGACGCCCTGCTGGTCAGTGTTGGACGTCGTC
CCTACACCGAAGGTTTGGGTCTGGAGGCCGTGGGCATTGTTAAGGATGAC
CGCGGCAGGATCCCCGTCAACGCCACTTTCCAAACTGTGGTGCCCAATAT
TTACGCCATCGGCGACTGCATCCACGGACCCATGTTGGCGCACAAGGCTG
AAGATGAGGGCCTCATCACCATTGAGGGCATCAACGGCGGCCACGTGCAC
ATCGACTACAACTGCGTGCCCAGTGTAGTCTACACGCATCCCGAGGTCGC
GTGGGTTGGCAAGAGCGAGGAGCAACTGAAGCAGGAGGGTGTTGCCTACA
AGGTGGGCAAGTTCCCCTTCCTGGCCAACTCTCGTGCCAAGACCAACAAC
GACACCGACGGTTTCGTCAAGGTTCTGGCCGACCAGGCCACCGATAAGAT
CCTGGGAACCCATATTATCGGACCTGGTGCCGGCGAGCTCATTAACGAGG
CTGTGCTGGCCATGGAGTACGGAGCCGCTGCCGAGGACGTTGCCCGCGTT
TGCCATGCGCATCCAACATGTTCCGAGGCCCTGCGTGAGGCCAATGTGGC
AGCTGCCTTTGGCAAACCCATCAACTTCGCAAGCTTTCTAGACCAT
BO09576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7430-RB | 1515 | CG7430-PB | 1..1512 | 17..1528 | 7560 | 100 | Plus |
CG7430-RA | 1515 | CG7430-PA | 1..1512 | 17..1528 | 7560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7430-RB | 1903 | CG7430-RB | 161..1673 | 16..1528 | 7565 | 100 | Plus |
CG7430-RA | 2252 | CG7430-RA | 281..1793 | 16..1528 | 7565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17848138..17849016 | 587..1465 | 4395 | 100 | Plus |
3L | 28110227 | 3L | 17847545..17848074 | 57..586 | 2650 | 100 | Plus |
3L | 28110227 | 3L | 17849080..17849142 | 1466..1528 | 315 | 100 | Plus |
3L | 28110227 | 3L | 17847196..17847238 | 16..58 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:30 has no hits.
BO09576.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:02 Download gff for
BO09576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 1..1515 | 17..1532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:26 Download gff for
BO09576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 277..1803 | 9..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:56 Download gff for
BO09576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 282..1793 | 17..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:02 Download gff for
BO09576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 277..1803 | 9..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:11 Download gff for
BO09576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7430-RA | 282..1793 | 17..1530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:11 Download gff for
BO09576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17847197..17847238 | 17..58 | 100 | -> | Plus |
3L | 17847547..17848074 | 59..586 | 100 | -> | Plus |
3L | 17848138..17849016 | 587..1465 | 100 | -> | Plus |
3L | 17849080..17849142 | 1466..1530 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:56 Download gff for
BO09576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17840297..17840338 | 17..58 | 100 | -> | Plus |
arm_3L | 17840647..17841174 | 59..586 | 100 | -> | Plus |
arm_3L | 17841238..17842116 | 587..1465 | 100 | -> | Plus |
arm_3L | 17842180..17842242 | 1466..1530 | 96 | | Plus |
BO09576.pep Sequence
Translation from 16 to 1546
> BO09576.pep
MQFTLRHVVSAVAKTPLRTNAAILGALNARCYSSTHEADIVVIGSGPGGY
VAAIKAAQMGMKTVSVEKEATLGGTCLNVGCIPSKALLNNSHYYHMAHSG
DLEKRGISCGSVSLDLEKLMGQKSNAVKALTGGIAMLFKKNKVTQLTGFG
TIVNPNEVEVKKSDGSTETVKTKNILIATGSEVTPFPGIEIDEEVIVSST
GALKLAKVPKHLVVIGAGVIGLELGSVWSRLGAEVTAIEFMDTIGGVGID
NEVSKTFQKVLTKQGLKFKLGTKVTAASRSGDNVTVSVENAKSGEKEEIQ
CDALLVSVGRRPYTEGLGLEAVGIVKDDRGRIPVNATFQTVVPNIYAIGD
CIHGPMLAHKAEDEGLITIEGINGGHVHIDYNCVPSVVYTHPEVAWVGKS
EEQLKQEGVAYKVGKFPFLANSRAKTNNDTDGFVKVLADQATDKILGTHI
IGPGAGELINEAVLAMEYGAAAEDVARVCHAHPTCSEALREANVAAAFGK
PINFASFLDH
BO09576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7430-PB | 504 | CG7430-PB | 1..504 | 1..504 | 2569 | 100 | Plus |
CG7430-PA | 504 | CG7430-PA | 1..504 | 1..504 | 2569 | 100 | Plus |
Trxr-1-PC | 508 | CG2151-PC | 8..486 | 21..487 | 398 | 28 | Plus |
Trxr-1-PA | 491 | CG2151-PA | 7..469 | 35..487 | 389 | 28.1 | Plus |
Trxr-1-PB | 596 | CG2151-PB | 112..574 | 35..487 | 389 | 28.1 | Plus |