Clone BO09576 Report

Search the DGRC for BO09576

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG7430-RA
Protein status:BO09576.pep: validated full length
Sequenced Size:1546

Clone Sequence Records

BO09576.3prime Sequence

868 bp (769 high quality bases) assembled on 2006-01-23

> BO09576.3prime
ATGGTCTAGAAAGCTTGCGAAGTTGATGGGTTTGCCAAAGGCAGCTGCCA
CATTGGCCTCACGCAGGGCCTCGGAACATGTTGGATGCGCATGGCAAACG
CGGGCAACGTCCTCGGCAGCGGCTCCGTACTCCATGGCCAGCACAGCCTC
GTTAATGAGCTCGCCGGCACCAGGTCCGATAATATGGGTTCCCAGGATCT
TATCGGTGGCCTGGTCGGCCAGAACCTTGACGAAACCGTCGGTGTCGTTG
TTGGTCTTGGCACGAGAGTTGGCCAGGAAGGGGAACTTGCCCACCTTGTA
GGCAACACCCTCCTGCTTCAGTTGCTCCTCGCTCTTGCCAACCCACGCGA
CCTCGGGATGCGTGTAGACTACACTGGGCACGCAGTTGTAGTCGATGTGC
ACGTGGCCGCCGTTGATGCCCTCAATGGTGATGAGGCCCTCATCTTCAGC
CTTGTGCGCCAACATGGGTCCGTGGATGCAGTCGCCGATGGCGTAAATAT
TGGGCACCACAGTTTGGAAAGTGGCGTTGACGGGGATCCTGCCGCGGTCA
TCCTTAACAATGCCCACGGCCTCCAGACCCAAACCTTCGGTGTAGGGACG
ACGTCCAACACTGACCAGCAGGGCGTCGCACTGGATCTCCTCTTTCTCGC
CAGACTTGGCGTTCTCCACGGACACGGTGACGTTGTCGCCGCTGCGAGAG
GCAGCCGTCACCTTGGTGCCCAGCTTGAACTTAAGACCCTGCTTGGTGAG
CACCTTTTGGAACGTCTTGGAGACTTCGTTATCGATGCCCACGCCGCCGA
TCGTATCCATGAACTCAATGGCAGTGACCTCAGCGCCCAGACGCGACCAT
ACCGAACCCAGCTCCAGG

BO09576.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-PA 1515 CG7430-RA 663..1512 868..19 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-RB 1903 CG7430-RB 824..1673 868..19 4250 100 Minus
CG7430-RA 2252 CG7430-RA 944..1793 868..19 4250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17848230..17849016 868..82 3935 100 Minus
3L 28110227 3L 17849080..17849142 81..19 315 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:51:44 has no hits.

BO09576.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:46 Download gff for BO09576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7430-PA 663..1515 15..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:15 Download gff for BO09576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7430-PA 663..1515 15..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:16:07 Download gff for BO09576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 944..1803 9..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:18 Download gff for BO09576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 944..1803 9..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:18 Download gff for BO09576.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17848230..17849016 82..868 100 -> Minus
3L 17849080..17849152 9..81 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:16:07 Download gff for BO09576.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17842180..17842252 9..81 94   Minus
arm_3L 17841330..17842116 82..868 100 -> Minus

BO09576.5prime Sequence

777 bp (761 high quality bases) assembled on 2006-01-23

> BO09576.5prime
GAAGTTATCAGTCGACATGCAATTCACGCTCCGTCATGTTGTTTCGGCAG
TAGCCAAGACTCCTCTGCGCACCAATGCCGCCATTCTGGGTGCCCTCAAC
GCCCGCTGCTACTCCAGCACCCACGAGGCGGACATCGTGGTGATTGGCTC
CGGACCCGGTGGCTATGTCGCCGCCATCAAGGCCGCCCAGATGGGCATGA
AGACGGTCAGCGTGGAGAAGGAGGCAACTCTGGGCGGCACCTGCCTGAAT
GTTGGCTGCATTCCCTCAAAGGCGCTGCTGAACAACTCCCACTACTACCA
CATGGCCCACTCCGGTGATCTGGAGAAACGTGGTATTAGCTGCGGCAGCG
TTAGCCTGGATCTGGAGAAGCTTATGGGTCAAAAGTCCAACGCCGTGAAG
GCTTTGACCGGTGGCATTGCCATGCTTTTCAAGAAGAACAAGGTCACACA
GCTGACGGGCTTCGGCACCATCGTCAATCCCAACGAGGTGGAGGTTAAGA
AATCCGACGGCTCCACGGAGACTGTCAAGACCAAGAACATCCTCATCGCC
ACCGGCTCGGAGGTTACCCCCTTCCCTGGCATTGAAATCGACGAGGAAGT
TATTGTGAGCAGCACTGGCGCCCTGAAGCTGGCCAAGGTGCCCAAGCATC
TGGTTGTCATCGGCGCCGGTGTCATTGGCCTGGAGCTGGGTTCGGTATGG
TCGCGTCTGGGCGCTGAGGTCACTGCCATTGAGTTCATGGATACGATCGG
CGGCGTGGGCATCGATAACGAAGTCTC

BO09576.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-PA 1515 CG7430-RA 1..761 17..777 3805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-RB 1903 CG7430-RB 161..922 16..777 3810 100 Plus
CG7430-RA 2252 CG7430-RA 281..1042 16..777 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17847545..17848074 57..586 2650 100 Plus
3L 28110227 3L 17848138..17848328 587..777 955 100 Plus
3L 28110227 3L 17847196..17847238 16..58 215 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:11:20 has no hits.

BO09576.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:14:47 Download gff for BO09576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7430-PA 1..761 17..777 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:16 Download gff for BO09576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7430-PA 1..761 17..777 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:46:11 Download gff for BO09576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 277..1042 9..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:42:15 Download gff for BO09576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 277..1042 9..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:42:15 Download gff for BO09576.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17847192..17847238 9..58 94 -> Plus
3L 17847547..17848074 59..586 100 -> Plus
3L 17848138..17848328 587..777 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:46:11 Download gff for BO09576.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17840292..17840338 9..58 94 -> Plus
arm_3L 17840647..17841174 59..586 100 -> Plus
arm_3L 17841238..17841428 587..777 100   Plus

BO09576.complete Sequence

1546 bp (1546 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631539

> BO09576.complete
GAAGTTATCAGTCGACATGCAATTCACGCTCCGTCATGTTGTTTCGGCAG
TAGCCAAGACTCCTCTGCGCACCAATGCCGCCATTCTGGGTGCCCTCAAC
GCCCGCTGCTACTCCAGCACCCACGAGGCGGACATCGTGGTGATTGGCTC
CGGACCCGGTGGCTATGTCGCCGCCATCAAGGCCGCCCAGATGGGCATGA
AGACGGTCAGCGTGGAGAAGGAGGCAACTCTGGGCGGCACCTGCCTGAAT
GTTGGCTGCATTCCCTCAAAGGCGCTGCTGAACAACTCCCACTACTACCA
CATGGCCCACTCCGGTGATCTGGAGAAACGTGGTATTAGCTGCGGCAGCG
TTAGCCTGGATCTGGAGAAGCTTATGGGTCAAAAGTCCAACGCCGTGAAG
GCTTTGACCGGTGGCATTGCCATGCTTTTCAAGAAGAACAAGGTCACACA
GCTGACGGGCTTCGGCACCATCGTCAATCCCAACGAGGTGGAGGTTAAGA
AATCCGACGGCTCCACGGAGACTGTCAAGACCAAGAACATCCTCATCGCC
ACCGGCTCGGAGGTTACCCCCTTCCCTGGCATTGAAATCGACGAGGAAGT
TATTGTGAGCAGCACTGGCGCCCTGAAGCTGGCCAAGGTGCCCAAGCATC
TGGTTGTCATCGGCGCCGGTGTCATTGGCCTGGAGCTGGGTTCGGTATGG
TCGCGTCTGGGCGCTGAGGTCACTGCCATTGAGTTCATGGATACGATCGG
CGGCGTGGGCATCGATAACGAAGTCTCCAAGACGTTCCAAAAGGTGCTCA
CCAAGCAGGGTCTTAAGTTCAAGCTGGGCACCAAGGTGACGGCTGCCTCT
CGCAGCGGCGACAACGTCACCGTGTCCGTGGAGAACGCCAAGTCTGGCGA
GAAAGAGGAGATCCAGTGCGACGCCCTGCTGGTCAGTGTTGGACGTCGTC
CCTACACCGAAGGTTTGGGTCTGGAGGCCGTGGGCATTGTTAAGGATGAC
CGCGGCAGGATCCCCGTCAACGCCACTTTCCAAACTGTGGTGCCCAATAT
TTACGCCATCGGCGACTGCATCCACGGACCCATGTTGGCGCACAAGGCTG
AAGATGAGGGCCTCATCACCATTGAGGGCATCAACGGCGGCCACGTGCAC
ATCGACTACAACTGCGTGCCCAGTGTAGTCTACACGCATCCCGAGGTCGC
GTGGGTTGGCAAGAGCGAGGAGCAACTGAAGCAGGAGGGTGTTGCCTACA
AGGTGGGCAAGTTCCCCTTCCTGGCCAACTCTCGTGCCAAGACCAACAAC
GACACCGACGGTTTCGTCAAGGTTCTGGCCGACCAGGCCACCGATAAGAT
CCTGGGAACCCATATTATCGGACCTGGTGCCGGCGAGCTCATTAACGAGG
CTGTGCTGGCCATGGAGTACGGAGCCGCTGCCGAGGACGTTGCCCGCGTT
TGCCATGCGCATCCAACATGTTCCGAGGCCCTGCGTGAGGCCAATGTGGC
AGCTGCCTTTGGCAAACCCATCAACTTCGCAAGCTTTCTAGACCAT

BO09576.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-RB 1515 CG7430-PB 1..1512 17..1528 7560 100 Plus
CG7430-RA 1515 CG7430-PA 1..1512 17..1528 7560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-RB 1903 CG7430-RB 161..1673 16..1528 7565 100 Plus
CG7430-RA 2252 CG7430-RA 281..1793 16..1528 7565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17848138..17849016 587..1465 4395 100 Plus
3L 28110227 3L 17847545..17848074 57..586 2650 100 Plus
3L 28110227 3L 17849080..17849142 1466..1528 315 100 Plus
3L 28110227 3L 17847196..17847238 16..58 215 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:27:30 has no hits.

BO09576.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:06:02 Download gff for BO09576.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 1..1515 17..1532 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:25:26 Download gff for BO09576.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 277..1803 9..1538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:56 Download gff for BO09576.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 282..1793 17..1530 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:06:02 Download gff for BO09576.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 277..1803 9..1538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:11 Download gff for BO09576.complete
Subject Subject Range Query Range Percent Splice Strand
CG7430-RA 282..1793 17..1530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:11 Download gff for BO09576.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17847197..17847238 17..58 100 -> Plus
3L 17847547..17848074 59..586 100 -> Plus
3L 17848138..17849016 587..1465 100 -> Plus
3L 17849080..17849142 1466..1530 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:56 Download gff for BO09576.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17840297..17840338 17..58 100 -> Plus
arm_3L 17840647..17841174 59..586 100 -> Plus
arm_3L 17841238..17842116 587..1465 100 -> Plus
arm_3L 17842180..17842242 1466..1530 96   Plus

BO09576.pep Sequence

Translation from 16 to 1546

> BO09576.pep
MQFTLRHVVSAVAKTPLRTNAAILGALNARCYSSTHEADIVVIGSGPGGY
VAAIKAAQMGMKTVSVEKEATLGGTCLNVGCIPSKALLNNSHYYHMAHSG
DLEKRGISCGSVSLDLEKLMGQKSNAVKALTGGIAMLFKKNKVTQLTGFG
TIVNPNEVEVKKSDGSTETVKTKNILIATGSEVTPFPGIEIDEEVIVSST
GALKLAKVPKHLVVIGAGVIGLELGSVWSRLGAEVTAIEFMDTIGGVGID
NEVSKTFQKVLTKQGLKFKLGTKVTAASRSGDNVTVSVENAKSGEKEEIQ
CDALLVSVGRRPYTEGLGLEAVGIVKDDRGRIPVNATFQTVVPNIYAIGD
CIHGPMLAHKAEDEGLITIEGINGGHVHIDYNCVPSVVYTHPEVAWVGKS
EEQLKQEGVAYKVGKFPFLANSRAKTNNDTDGFVKVLADQATDKILGTHI
IGPGAGELINEAVLAMEYGAAAEDVARVCHAHPTCSEALREANVAAAFGK
PINFASFLDH

BO09576.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7430-PB 504 CG7430-PB 1..504 1..504 2569 100 Plus
CG7430-PA 504 CG7430-PA 1..504 1..504 2569 100 Plus
Trxr-1-PC 508 CG2151-PC 8..486 21..487 398 28 Plus
Trxr-1-PA 491 CG2151-PA 7..469 35..487 389 28.1 Plus
Trxr-1-PB 596 CG2151-PB 112..574 35..487 389 28.1 Plus