Clone Sequence Records
BO09585.3prime Sequence
842 bp (770 high quality bases) assembled on 2006-01-23
> BO09585.3prime
ATGGTCTAGAAAGCTTGCACTTTTGTTTTCTATCTTTACATTCACCAAAA
ACACGTTAAAAATGAAGATGTTCTTGGTATTTCCATCTTGTGGTGGTGAT
GTTGACGGAACTTCTGGAGCCAGAGTGGTAATGGGAACTTCAGGAGGAAC
ACCCGTTGTCGAAGGTAGCTTAGTGGGCACAGCGGTTGTGGATACATCCT
CGAGGTCCTCCCTTGTCGATTGGTCACCTTCTGGATCAACAGTACTATCA
ACATCCGGTTCAACGGTAGTCGTTACTTCTGGTTCTGCGTTTGTTGTAGA
TGTCTCCTTATCGGGTTCTTCTGTTGTAGACTCCTCGGGAACTTCAGTAG
TCGAATCCTCAGGTTCTTCGGTTGTAGTTGAGGGTTCTACTGGCTTTTTG
GTCGTTGTAGTATCTTCTTCGGGCTCCTCGGTTGTTGAATCATCAGCATC
ACTGGGTGATGTAGTGGTCTCTTCGGGGTCCTCGGTGGTTGTTTCCTCTT
CGTCACCTCCTGGAGCTGCGGTAGTATCATCATCTTCGCCAGGTGCTGAC
GTAGTATCATCATCTTCAGGACTTGAAGTGGTGGACTCCTCGGATTCCTT
GGGGGTAGTAGAAACATCTTCAGGCTCCTTAGTTGTTGAATCCTCAGTAT
CAATTGGTGATGTAGAGGTCTCTTCGGGCTTCTCTGTGGTCGTTTCCGGC
TCTTCAGTCGTTGATTGCTCTCCTCCGTCTGTTGGAGAAGAGGTCGTACT
TTCGTCTTCTGGGGCTTCCGTAGTCGAATCTATTGGTTCTTCGGTTGTAG
TAGTCGAGTCTTCGGGCTGTTCGGTTGTAGTAGAGGATTCTT
BO09585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-PA | 2031 | CG6296-RA | 1205..2028 | 842..19 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-RA | 2127 | CG6296-RA | 1217..2040 | 842..19 | 4120 | 100 | Minus |
CG6296-RA | 2127 | CG6296-RA | 1362..1442 | 496..416 | 225 | 85.2 | Minus |
CG6296-RA | 2127 | CG6296-RA | 1563..1643 | 697..617 | 225 | 85.2 | Minus |
CG6296-RA | 2127 | CG6296-RA | 1171..1260 | 435..346 | 195 | 81.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27003323..27004146 | 19..842 | 4120 | 100 | Plus |
3R | 32079331 | 3R | 27003720..27003800 | 617..697 | 225 | 85.2 | Plus |
3R | 32079331 | 3R | 27003921..27004001 | 416..496 | 225 | 85.2 | Plus |
3R | 32079331 | 3R | 27004103..27004192 | 346..435 | 195 | 81.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:48:13 has no hits.
BO09585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:03 Download gff for
BO09585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-PA | 1205..2031 | 16..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:37 Download gff for
BO09585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-PA | 1205..2031 | 16..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:57:49 Download gff for
BO09585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 1217..2044 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:23 Download gff for
BO09585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 1217..2044 | 15..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:23 Download gff for
BO09585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27003319..27004146 | 15..842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:57:49 Download gff for
BO09585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22829041..22829868 | 15..842 | 99 | | Plus |
BO09585.5prime Sequence
895 bp (862 high quality bases) assembled on 2006-01-23
> BO09585.5prime
GAAGTTATCAGTCGACATGAGATTGTGCCTTCTTGTGCTGGGCTGCGTGA
TAGCTGCCAGCGCCTGGCCGGTCGACCAACTTTCGGTTCGAGATCATGGC
ATCAATGGTTGGTTTGTCCCTCAAAGGGAAGGTGGCCTAAGATGGATTGG
TAAGGCGGAGGCGGAGCGCCAGTTGGAATACTACGAGGCTCAGGAGGCGT
TGGAAGGTCGTCTGTCCACCAACACGGTTAACTTCTACCTTTACACGCTG
CAGAATCCTAGTACAGGACAACAGATCAAGGCTACCCAAGACTCCATCGA
TGGTTCTTTTTTCAATCCTCAAAATCCAACTAGAATCACCATTCACGGTT
GGAACTCGAACTACAAGGATGGGGTGAACACCAGGGTAGCCGATGCTTGG
TTCCAGTACGGCGACTACAACATGATCGCAGTAGACTGGCTTCGTGGACG
TTCCTTGGAATACGCTTCCTCTGTGGCCGGAGCCCCAGGAGCTGGAAAGA
AAGTAGCCGCACTTGTGGACTTCCTAGTGGAGGGATACGGCATGAGCTTG
GACACTCTGGAAATTGTGGGCTTCAGTTTGGGCGCCCACGTTGCAGGACA
CACCGCCAAGCAGGTGAACTCTGGCAAGGTGGGAAAAGTCGTGGGCTTGG
ATCCCGCCTCCCCCCTGATCAGTTACTCAAACACCGAAAAGCGTCTGTCC
AGCGATGATGCATTATATGTGGAGTCAATCCAGACAAACGGTGCCATTTT
GGGCTTCGGCCAGCCAATTGGAAAAGCTTCCTTCTACATGAACGGTGGTA
GATCACAGCCTGGTTGTGGTATCGATATAACCGGCAGTTGCTCACACACC
AAAGCTGTTCTGTATTACGTGGAGGCGCTGCTGTGGAACAACTTT
BO09585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-PA | 2031 | CG6296-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-RA | 2127 | CG6296-RA | 13..891 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27004472..27005036 | 895..331 | 2825 | 100 | Minus |
3R | 32079331 | 3R | 27005087..27005364 | 333..56 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 27005418..27005457 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:17:02 has no hits.
BO09585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:04 Download gff for
BO09585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:20:38 Download gff for
BO09585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:30:24 Download gff for
BO09585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 2..891 | 8..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:30:04 Download gff for
BO09585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 2..891 | 8..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:30:04 Download gff for
BO09585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27004472..27005033 | 334..895 | 100 | <- | Minus |
3R | 27005087..27005363 | 57..333 | 100 | <- | Minus |
3R | 27005418..27005463 | 8..56 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:30:24 Download gff for
BO09585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22830194..22830755 | 334..895 | 100 | <- | Minus |
arm_3R | 22830809..22831085 | 57..333 | 100 | <- | Minus |
arm_3R | 22831140..22831185 | 8..56 | 91 | | Minus |
BO09585.complete Sequence
2062 bp (2062 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631540
> BO09585.complete
GAAGTTATCAGTCGACATGAGATTGTGCCTTCTTGTGCTGGGCTGCGTGA
TAGCTGCCAGCGCCTGGCCGGTCGACCAACTTTCGGTTCGAGATCATGGC
ATCAATGGTTGGTTTGTCCCTCAAAGGGAAGGTGGCCTAAGATGGATTGG
TAAGGCGGAGGCGGAGCGCCAGTTGGAATACTACGAGGCTCAGGAGGCGT
TGGAAGGTCGTCTGTCCACCAACACGGTTAACTTCTACCTTTACACGCTG
CAGAATCCTAGTACAGGACAACAGATCAAGGCTACCCAAGACTCCATCGA
TGGTTCTTTTTTCAATCCTCAAAATCCAACTAGAATCACCATTCACGGTT
GGAACTCGAACTACAAGGATGGGGTGAACACCAGGGTAGCCGATGCTTGG
TTCCAGTACGGCGACTACAACATGATCGCAGTAGACTGGCTTCGTGGACG
TTCCTTGGAATACGCTTCCTCTGTGGCCGGAGCCCCAGGAGCTGGAAAGA
AAGTAGCCGCACTTGTGGACTTCCTAGTGGAGGGATACGGCATGAGCTTG
GACACTCTGGAAATTGTGGGCTTCAGTTTGGGCGCCCACGTTGCAGGACA
CACCGCCAAGCAGGTGAACTCTGGCAAGGTGGGAAAAGTCGTGGGCTTGG
ATCCCGCCTCCCCCCTGATCAGTTACTCAAACACCGAAAAGCGTCTGTCC
AGCGATGATGCATTATATGTGGAGTCAATCCAGACAAACGGTGCCATTTT
GGGCTTCGGCCAGCCAATTGGAAAAGCTTCCTTCTACATGAACGGTGGTA
GATCACAGCCTGGTTGTGGTATCGATATAACCGGCAGTTGCTCACACACC
AAAGCTGTTCTGTATTACGTGGAGGCGCTGCTGTGGAACAACTTTCCTTC
GATAAAGTGCGAATCCTCCGTGGACGCCAACAAGAACAACTGTGGCAATA
CATACAGTTCAGTCTTTATGGGTGCTTCCATAAACTTCTTTGTCGCAGAA
GGTATCTTCTATGTGCCGGTAAACAAGGAATCCCCTTACGGACTTGGAGA
ACTGAACAGTGGCGGAGAGGCTACAACTGGTACTCCTGAAATTACTTCTA
CTACTGTTGATGGTGAAGATGAGTCGACGACTGAGGTCTCCACATCGACG
ACAACGGATAAGCCAGAGGAGTCGACAACCGAAGAGCCCGAAGAGGATTC
CACAACAAACGGAAAGCCCGAAGAATCCTCTACTACAACCGAACAGCCCG
AAGACTCGACTACTACAACCGAAGAACCAATAGATTCGACTACGGAAGCC
CCAGAAGACGAAAGTACGACCTCTTCTCCAACAGACGGAGGAGAGCAATC
AACGACTGAAGAGCCGGAAACGACCACAGAGAAGCCCGAAGAGACCTCTA
CATCACCAATTGATACTGAGGATTCAACAACTAAGGAGCCTGAAGATGTT
TCTACTACCCCCAAGGAATCCGAGGAGTCCACCACTTCAAGTCCTGAAGA
TGATGATACTACGTCAGCACCTGGCGAAGATGATGATACTACCGCAGCTC
CAGGAGGTGACGAAGAGGAAACAACCACCGAGGACCCCGAAGAGACCACT
ACATCACCCAGTGATGCTGATGATTCAACAACCGAGGAGCCCGAAGAAGA
TACTACAACGACCAAAAAGCCAGTAGAACCCTCAACTACAACCGAAGAAC
CTGAGGATTCGACTACTGAAGTTCCCGAGGAGTCTACAACAGAAGAACCC
GATAAGGAGACATCTACAACAAACGCAGAACCAGAAGTAACGACTACCGT
TGAACCGGATGTTGATAGTACTGTTGATCCAGAAGGTGACCAATCGACAA
GGGAGGACCTCGAGGATGTATCCACAACCGCTGTGCCCACTAAGCTACCT
TCGACAACGGGTGTTCCTCCTGAAGTTCCCATTACCACTCTGGCTCCAGA
AGTTCCGTCAACATCACCACCACAAGATGGAAATACCAAGAACATCTTCA
TTTTTAACGTGTTTTTGGTGAATGTAAAGATAGAAAACAAAAGTGCAAGC
TTTCTAGACCAT
BO09585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-RA | 2031 | CG6296-PA | 1..2028 | 17..2044 | 10140 | 100 | Plus |
CG6296-RA | 2031 | CG6296-PA | 1350..1430 | 1567..1647 | 225 | 85.2 | Plus |
CG6296-RA | 2031 | CG6296-PA | 1551..1631 | 1366..1446 | 225 | 85.2 | Plus |
CG6296-RA | 2031 | CG6296-PA | 1159..1248 | 1628..1717 | 195 | 81.1 | Plus |
CG6296-RA | 2031 | CG6296-PA | 1612..1701 | 1175..1264 | 195 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-RA | 2127 | CG6296-RA | 13..2040 | 17..2044 | 10140 | 100 | Plus |
CG6296-RA | 2127 | CG6296-RA | 1362..1442 | 1567..1647 | 225 | 85.2 | Plus |
CG6296-RA | 2127 | CG6296-RA | 1563..1643 | 1366..1446 | 225 | 85.2 | Plus |
CG6296-RA | 2127 | CG6296-RA | 1171..1260 | 1628..1717 | 195 | 81.1 | Plus |
CG6296-RA | 2127 | CG6296-RA | 1624..1713 | 1175..1264 | 195 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27003323..27005036 | 2044..331 | 8570 | 100 | Minus |
3R | 32079331 | 3R | 27005087..27005364 | 333..56 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 27003720..27003800 | 1446..1366 | 225 | 85.2 | Minus |
3R | 32079331 | 3R | 27003921..27004001 | 1647..1567 | 225 | 85.2 | Minus |
3R | 32079331 | 3R | 27005418..27005457 | 56..17 | 200 | 100 | Minus |
3R | 32079331 | 3R | 27003650..27003739 | 1264..1175 | 195 | 81.1 | Minus |
3R | 32079331 | 3R | 27004103..27004192 | 1717..1628 | 195 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:57:16 has no hits.
BO09585.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:08 Download gff for
BO09585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 1..2031 | 17..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:26 Download gff for
BO09585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 2..2044 | 8..2048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:50:43 Download gff for
BO09585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 13..2027 | 17..2031 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:08 Download gff for
BO09585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 2..2044 | 8..2048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:01 Download gff for
BO09585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6296-RA | 13..2027 | 17..2031 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:01 Download gff for
BO09585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27003336..27005033 | 334..2031 | 100 | <- | Minus |
3R | 27005087..27005363 | 57..333 | 100 | <- | Minus |
3R | 27005418..27005457 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:50:43 Download gff for
BO09585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22829058..22830755 | 334..2031 | 100 | <- | Minus |
arm_3R | 22830809..22831085 | 57..333 | 100 | <- | Minus |
arm_3R | 22831140..22831179 | 17..56 | 100 | | Minus |
BO09585.pep Sequence
Translation from 16 to 2062
> BO09585.pep
MRLCLLVLGCVIAASAWPVDQLSVRDHGINGWFVPQREGGLRWIGKAEAE
RQLEYYEAQEALEGRLSTNTVNFYLYTLQNPSTGQQIKATQDSIDGSFFN
PQNPTRITIHGWNSNYKDGVNTRVADAWFQYGDYNMIAVDWLRGRSLEYA
SSVAGAPGAGKKVAALVDFLVEGYGMSLDTLEIVGFSLGAHVAGHTAKQV
NSGKVGKVVGLDPASPLISYSNTEKRLSSDDALYVESIQTNGAILGFGQP
IGKASFYMNGGRSQPGCGIDITGSCSHTKAVLYYVEALLWNNFPSIKCES
SVDANKNNCGNTYSSVFMGASINFFVAEGIFYVPVNKESPYGLGELNSGG
EATTGTPEITSTTVDGEDESTTEVSTSTTTDKPEESTTEEPEEDSTTNGK
PEESSTTTEQPEDSTTTTEEPIDSTTEAPEDESTTSSPTDGGEQSTTEEP
ETTTEKPEETSTSPIDTEDSTTKEPEDVSTTPKESEESTTSSPEDDDTTS
APGEDDDTTAAPGGDEEETTTEDPEETTTSPSDADDSTTEEPEEDTTTTK
KPVEPSTTTEEPEDSTTEVPEESTTEEPDKETSTTNAEPEVTTTVEPDVD
STVDPEGDQSTREDLEDVSTTAVPTKLPSTTGVPPEVPITTLAPEVPSTS
PPQDGNTKNIFIFNVFLVNVKIENKSASFLDH
BO09585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6296-PA | 676 | CG6296-PA | 1..676 | 1..676 | 3531 | 100 | Plus |
CG6295-PA | 338 | CG6295-PA | 2..337 | 1..344 | 957 | 51.5 | Plus |
CG6283-PA | 339 | CG6283-PA | 1..336 | 1..342 | 953 | 52.3 | Plus |
CG17192-PA | 337 | CG17192-PA | 1..337 | 1..345 | 901 | 48.7 | Plus |
CG6277-PA | 341 | CG6277-PA | 1..339 | 1..343 | 899 | 50 | Plus |