Clone Sequence Records
BO09594.3prime Sequence
860 bp (769 high quality bases) assembled on 2006-01-23
> BO09594.3prime
ATGGTCTAGAAAGCTTGCCTTGGGACTGGTCGTGGACTTGCGCCGGGCAT
CCGTTATGGCACCCCACAGCTCGATGATGAAGTCATCCGTGAAGCCGAAC
GACTCTAGGTCCGAGTTGTCGATGGCCTCGGCGAAGTCCATTGAGTTGGA
CTTTTGGTCGCCCAAGTCCCAGATCTGGGACGCCAGCTCCGTGTCGTTGA
TGCCCATGAAGGACTCCAGCAGGTTATTAATGGCCTCGATACCGGCCACA
GTCGCCTCATCGAACTGCGGCTCGATCTGGGCATTGCCATTGGCCTTGAA
CCGCAGCGTCTCCTTGCCGCTGCCATAGTTCTTTCCTCCGGCCGAGCCCG
ACGCCCTTGACTGGCTGCGCGGTCCGATGCCCTGGAAGCCGCTTCGCACT
GGCTCCACCAGGCGCAGGGTGAAGGTCTCCCCGGTGGCAATGTCCTTCAG
CATGCGCGCCACCTCGTAGTGCCGCTTGCCCACCATATTCTGGCCGTTGA
GCTTCTCGATGTGATCGCCAACGCTGATGTGCTCGATGCGATCGATGATC
GAGTCCTCCTTGATCCGCTTTATGAAGGCGTAGCCGGCCCCGTTGTCGGT
GATCGTCAGTCCGAGGGCATCCTGCGACTTCACAATCTCGATCTCCTTGG
GCCGACCTTTGCGATGGGCGAATATAAAGTCGTCCAGCCCGATCTGCCCG
CCCAGCAGACGCGTCATGTCCACCTTGTGCGAGTTGAGGGTGCAGAAGAG
AATGTCCTTCTCGGATATGTCAAAGCACTCGGCAATCTTCTGGTACAGCT
CTCGAACGCTGGAGAAGTCGTGGATTAGACCGGTGGGACTGCCGTGGGCC
AGTTGGCAGT
BO09594.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11546-PA | 1011 | l(2)02045-RA | 167..1008 | 860..19 | 4210 | 100 | Minus |
| CG11546-PB | 1011 | l(2)02045-RB | 167..1008 | 860..19 | 4210 | 100 | Minus |
| CG11546-PD | 1011 | l(2)02045-RD | 167..1008 | 860..19 | 4210 | 100 | Minus |
| CG11546-PC | 1011 | l(2)02045-RC | 167..1008 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 462..1303 | 860..19 | 4210 | 100 | Minus |
| kermit-RC | 1722 | CG11546-RC | 523..1364 | 860..19 | 4210 | 100 | Minus |
| kermit-RD | 1606 | CG11546-RD | 407..1248 | 860..19 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147276..8148117 | 19..860 | 4210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:57:20 has no hits.
BO09594.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:21 Download gff for
BO09594.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PD | 167..1011 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:03 Download gff for
BO09594.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PC | 167..1011 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:31:03 Download gff for
BO09594.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 407..1253 | 11..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:00 Download gff for
BO09594.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 407..1253 | 11..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:00 Download gff for
BO09594.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147271..8148117 | 11..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:31:03 Download gff for
BO09594.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034776..4035622 | 11..860 | 99 | | Plus |
BO09594.5prime Sequence
877 bp (865 high quality bases) assembled on 2006-01-23
> BO09594.5prime
GAAGTTATCAGTCGACATGCCGCTCTTCACAAGAAAATCACCCAAGCAAG
GACCCACCTCGGATGGGGGCTCCCAGTTCGGCAGTCGCTCCTCCATGAAC
TCCGGGTCCTCCCAGGGCAGCCACATTAGCAATAACAACAACAACAGCAT
TCCGGAGAAAACAAAGCCCCCGCTGGTCTTCCACTGCCAACTGGCCCACG
GCAGTCCCACCGGTCTAATCCACGACTTCTCCAGCGTTCGAGAGCTGTAC
CAGAAGATTGCCGAGTGCTTTGACATATCCGAGAAGGACATTCTCTTCTG
CACCCTCAACTCGCACAAGGTGGACATGACGCGTCTGCTGGGCGGGCAGA
TCGGGCTGGACGACTTTATATTCGCCCATCGCAAAGGTCGGCCCAAGGAG
ATCGAGATTGTGAAGTCGCAGGATGCCCTCGGACTGACGATCACCGACAA
CGGGGCCGGCTACGCCTTCATAAAGCGGATCAAGGAGGACTCGATCATCG
ATCGCATCGAGCACATCAGCGTTGGCGATCACATCGAGAAGCTCAACGGC
CAGAATATGGTGGGCAAGCGGCACTACGAGGTGGCGCGCATGCTGAAGGA
CATTGCCACCGGGGAGACCTTCACCCTGCGCCTGGTGGAGCCAGTGCGAA
GCGGCTTCCAGGGCATCGGACCGCGCAGCCAGTCAAGGGCGTCGGGCTCG
GCCGGAGGAAAGAACTATGGCAGCGGCAAGGAGACGCTGCGGTTCAAGGC
CAATGGCAATGCCCAGATCGAGCCGCAGTTCGATGAGGCGACTGTGGCCG
GTATCGAGGCCATTAATAACCTGCTGGAGTCCTTCATGGGCATCAACGAC
ACGGAGCTGGCGTCCCAGATCTGGGAC
BO09594.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11546-PA | 1011 | l(2)02045-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
| CG11546-PB | 1011 | l(2)02045-RB | 1..861 | 17..877 | 4305 | 100 | Plus |
| CG11546-PD | 1011 | l(2)02045-RD | 1..861 | 17..877 | 4305 | 100 | Plus |
| CG11546-PC | 1011 | l(2)02045-RC | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 295..1156 | 16..877 | 4310 | 100 | Plus |
| kermit-RC | 1722 | CG11546-RC | 356..1217 | 16..877 | 4310 | 100 | Plus |
| kermit-RD | 1606 | CG11546-RD | 240..1101 | 16..877 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147423..8148284 | 877..16 | 4310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:24:54 has no hits.
BO09594.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:22 Download gff for
BO09594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PD | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:04 Download gff for
BO09594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11546-PC | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:13:40 Download gff for
BO09594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1101 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:54 Download gff for
BO09594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 232..1101 | 9..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:54 Download gff for
BO09594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147423..8148292 | 9..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:13:40 Download gff for
BO09594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034928..4035797 | 9..877 | 99 | | Minus |
BO09594.complete Sequence
1042 bp assembled on 2007-10-17
GenBank Submission: FJ638670
> BO09594.complete
GAAGTTATCAGTCGACATGCCGCTCTTCACAAGAAAATCACCCAAGCAAG
GACCCACCTCGGATGGGGGCTCCCAGTTCGGCAGTCGCTCCTCCATGAAC
TCCGGGTCCTCCCAGGGCAGCCACATTAGCAATAACAACAACAACAGCAT
TCCGGAGAAAACAAAGCCCCCGCTGGTCTTCCACTGCCAACTGGCCCACG
GCAGTCCCACCGGTCTAATCCACGACTTCTCCAGCGTTCGAGAGCTGTAC
CAGAAGATTGCCGAGTGCTTTGACATATCCGAGAAGGACATTCTCTTCTG
CACCCTCAACTCGCACAAGGTGGACATGACGCGTCTGCTGGGCGGGCAGA
TCGGGCTGGACGACTTTATATTCGCCCATCGCAAAGGTCGGCCCAAGGAG
ATCGAGATTGTGAAGTCGCAGGATGCCCTCGGACTGACGATCACCGACAA
CGGGGCCGGCTACGCCTTCATAAAGCGGATCAAGGAGGACTCGATCATCG
ATCGCATCGAGCACATCAGCGTTGGCGATCACATCGAGAAGCTCAACGGC
CAGAATATGGTGGGCAAGCGGCACTACGAGGTGGCGCGCATGCTGAAGGA
CATTGCCACCGGGGAGACCTTCACCCTGCGCCTGGTGGAGCCAGTGCGAA
GCGGCTTCCAGGGCATCGGACCGCGCAGCCAGTCAAGGGCGTCGGGCTCG
GCCGGAGGAAAGAACTATGGCAGCGGCAAGGAGACGCTGCGGTTCAAGGC
CAATGGCAATGCCCAGATCGAGCCGCAGTTCGATGAGGCGACTGTGGCCG
GTATCGAGGCCATTAATAACCTGCTGGAGTCCTTCATGGGCATCAACGAC
ACGGAGCTGGCGTCCCAGATCTGGGACTTGGGCGACCAAAAGTCCAACTC
AATGGACTTCGCCGAGGCCATCGACAACTCGGACCTAGAGTCGTTCGGCT
TCACGGATGACTTCATCATCGAGCTGTGGGGTGCCATAACGGATGCCCGG
CGCAAGTCCACGACCAGTCCCAAGGCAAGCTTTCTAGACCAT
BO09594.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1011 | CG11546-PE | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| kermit-RC | 1011 | CG11546-PC | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| kermit-RD | 1011 | CG11546-PD | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-RE | 1661 | CG11546-RE | 295..1303 | 16..1024 | 5045 | 100 | Plus |
| kermit-RC | 1722 | CG11546-RC | 356..1364 | 16..1024 | 5045 | 100 | Plus |
| kermit-RD | 1606 | CG11546-RD | 240..1248 | 16..1024 | 5045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8147276..8148284 | 1024..16 | 5045 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:01:48 has no hits.
BO09594.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:49 Download gff for
BO09594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 1..1011 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:13 Download gff for
BO09594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 198..1219 | 9..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:22 Download gff for
BO09594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 241..1248 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:55 Download gff for
BO09594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 207..1214 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:45 Download gff for
BO09594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kermit-RD | 241..1248 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:45 Download gff for
BO09594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8147274..8148283 | 17..1026 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:22 Download gff for
BO09594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4034779..4035788 | 17..1026 | 99 | | Minus |
BO09594.pep Sequence
Translation from 16 to 1042
> BO09594.pep
MPLFTRKSPKQGPTSDGGSQFGSRSSMNSGSSQGSHISNNNNNSIPEKTK
PPLVFHCQLAHGSPTGLIHDFSSVRELYQKIAECFDISEKDILFCTLNSH
KVDMTRLLGGQIGLDDFIFAHRKGRPKEIEIVKSQDALGLTITDNGAGYA
FIKRIKEDSIIDRIEHISVGDHIEKLNGQNMVGKRHYEVARMLKDIATGE
TFTLRLVEPVRSGFQGIGPRSQSRASGSAGGKNYGSGKETLRFKANGNAQ
IEPQFDEATVAGIEAINNLLESFMGINDTELASQIWDLGDQKSNSMDFAE
AIDNSDLESFGFTDDFIIELWGAITDARRKSTTSPKASFLDH
BO09594.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kermit-PE | 336 | CG11546-PE | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PC | 336 | CG11546-PC | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PD | 336 | CG11546-PD | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PB | 336 | CG11546-PB | 1..336 | 1..336 | 1739 | 100 | Plus |
| kermit-PA | 336 | CG11546-PA | 1..336 | 1..336 | 1739 | 100 | Plus |
