Clone BO09595 Report

Search the DGRC for BO09595

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:95
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptPof-RA
Protein status:BO09595.pep: Imported from assembly
Sequenced Size:1519

Clone Sequence Records

BO09595.3prime Sequence

903 bp (796 high quality bases) assembled on 2006-01-23

> BO09595.3prime
ATGGTCTAGAAAGCTTGCAGGATCAGGATCGCGTTCCAGTTGAGCATAGA
GCTCCTCAAGTCTGTCATCCTTCTCGTACTCGTCAGCAGTCTTCATCGCA
CTAGTGCCTCGTCTGAAAGGACCCGTAAACAAGCGGCCAAAACACGATCT
TTTGGCTTTCTTCTGGCTGTCATCTTGAGCTTGTGTTGTCGGCTTGGTAG
CCGGTACGGGATCAGGGATGCCCAAATAGTCGCACTCTTTCTTAATGTCA
CGCATTAGGTGCACCGCATTGGATCCTAGTAAACAACCTGTGGGATTCAC
GCTCGGCTCTACTTTGGGTGTAAGGTCAGGTATAAATGTATCTTCTAAGC
TGTTCTGTCTAAATTGCAAACTTTTTATAATAGCGCCGTACTCGGCCATT
TGACGCTTGAGCTTTTCAATCTCTCTTTCCTGTTCATTTATCTTCTTCTT
GCGCTTGCCGTCTTCCTTGCCGTTGCCACTGGAATCTGAGCAGTTATCGC
TGTCGCTAATTATGATAGACTCTAACGGCGGTGGAGATATGACCTTGCAG
TCAGTGTTGTCGTCGTCTCCATTTGGGGATTGCAGCGCCTGAAAGGAGGT
GGCGCACTGCACCATTGGCATCCCGGCGCGCTTCCGGAGTCGCCGATAGC
GGACTGTGAGAGTGCGGCTGTTCAGCGGTGAGTCGACCAGCTCCTTGAAC
GCTTCCATGGTCTGGTCAGGTGAGGCGTAACGCACAAAGGCGTAGCGAGC
GCGCTTCTCGCGCTTCAGCACTCCGATGTCCACGCGCATGGCGTTGGCGA
AATAGGCCTTTATGGCCGATGTGGTCATGTTGAACGGTATGTTGCCCACA
TACAGAGAACAGGGATCAATGAACTCGGCCTGCTCCTCATCGGAGAACGG
CTT

BO09595.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3691-PB 1488 Pof-RB 601..1485 903..19 4425 100 Minus
CG3691-PA 1488 Pof-RA 601..1485 903..19 4425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RC 1683 CG3691-RC 722..1606 903..19 4425 100 Minus
Pof-RA 1736 CG3691-RA 775..1659 903..19 4425 100 Minus
Pof-RB 1959 CG3691-RB 726..1610 903..19 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24670225..24670786 903..342 2810 100 Minus
2R 25286936 2R 24670846..24671040 343..149 975 100 Minus
2R 25286936 2R 24671098..24671228 149..19 655 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:15:47 has no hits.

BO09595.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:23 Download gff for BO09595.3prime
Subject Subject Range Query Range Percent Splice Strand
Pof-PA 601..1488 15..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:06 Download gff for BO09595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3691-PA 601..1488 15..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:25:57 Download gff for BO09595.3prime
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 726..1619 9..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:23 Download gff for BO09595.3prime
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 726..1619 9..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:23 Download gff for BO09595.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24670225..24670786 342..903 100 -> Minus
2R 24670848..24671039 150..341 100 -> Minus
2R 24671098..24671237 9..149 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:25:57 Download gff for BO09595.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20557748..20558309 342..903 100 -> Minus
arm_2R 20558371..20558562 150..341 100 -> Minus
arm_2R 20558621..20558760 9..149 97   Minus

BO09595.5prime Sequence

879 bp (822 high quality bases) assembled on 2006-01-23

> BO09595.5prime
GAAGTTATCAGTCGACATGGATTCTAAACGCGCGGCCCTTGAATCCGGCG
ACGGTCCGGACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAA
GCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACC
CTACACGGGCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAAC
CGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTG
GACAACGACGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACAC
TGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACAT
TAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACA
CCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGC
TCCCATGCTGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCA
TTAGCGTGGCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGAT
GTGGAGGCCACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCA
CCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCA
TTGATCCCTGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACA
TCGGCCATAAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGT
GCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCAC
CTGACCAGACCATGGAAGCGTTCAAGGAGCTGGTCGACTCACCGCTGAAC
AGCCGCACTCTCACAGTCCGCTATCGGCG

BO09595.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3691-PB 1488 Pof-RB 1..863 17..879 4290 99.8 Plus
CG3691-PA 1488 Pof-RA 1..863 17..879 4290 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RB 1959 CG3691-RB 126..988 17..879 4300 99.9 Plus
Pof-RC 1683 CG3691-RC 122..984 17..879 4300 99.9 Plus
Pof-RA 1736 CG3691-RA 175..1037 17..879 4300 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24669902..24670487 294..879 2930 100 Plus
2R 25286936 2R 24669571..24669847 17..293 1370 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 10:26:59 has no hits.

BO09595.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:24 Download gff for BO09595.5prime
Subject Subject Range Query Range Percent Splice Strand
Pof-PA 1..863 17..879 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:07 Download gff for BO09595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3691-PA 1..863 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:07 Download gff for BO09595.5prime
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 126..988 17..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:47 Download gff for BO09595.5prime
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 126..988 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:47 Download gff for BO09595.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24669571..24669847 17..293 99 -> Plus
2R 24669902..24670487 294..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:07 Download gff for BO09595.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20557094..20557370 17..293 99 -> Plus
arm_2R 20557425..20558010 294..879 100   Plus

BO09595.complete Sequence

1519 bp assembled on 2008-08-15

GenBank Submission: FJ631541

> BO09595.complete
GAAGTTATCAGTCGACATGGATTCTAAACGCGCGGCCCTTGAATCCGGCG
ACGGTCCGGACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAA
GCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACC
CTACACGGGCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAAC
CGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTG
GACAACGACGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACAC
TGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACAT
TAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACA
CCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGC
TCCCATGCTGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCA
TTAGCGTGGCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGAT
GTGGAGGCCACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCA
CCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCA
TTGATCCCTGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACA
TCGGCCATAAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGT
GCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCAC
CTGACCAGACCATGGAAGCGTTCAAGGAGCTGGTCGACTCACCGCTGAAC
AGCCGCACTCTCACAGTCCGCTATCGGCGACTCCGGAAGCGCGCCGGGAT
GCCAATGGTGCAGTGCGCCACCTCCTTTCAGGCGCTGCAATCCCCAAATG
GAGACGACGACAACACTGACTGCAAGGTCATATCTCCACCGCCGTTAGAG
TCTATCATAATTAGCGACAGCGATAACTGCTCAGATTCCAGTGGCAACGG
CAAGGAAGACGGCAAGCGCAAGAAGAAGATAAATGAACAGGAAAGAGAGA
TTGAAAAGCTCAAGCGTCAAATGGCCGAGTACGGCGCTATTATAAAAAGT
TTGCAATTTAGACAGAACAGCTTAGAAGATACATTTATACCTGACCTTAC
ACCCAAAGTAGAGCCGAGCGTGAATCCCACAGGTTGTTTACTAGGATCCA
ATGCGGTGCACCTAATGCGTGACATTAAGAAAGAGTGCGACTATTTGGGC
ATCCCTGATCCCGTACCGGCTACCAAGCCGACAACACAAGCTCAAGATGA
CAGCCAGAAGAAAGCCAAAAGATCGTGTTTTGGCCGCTTGTTTACGGGTC
CTTTCAGACGAGGCACTAGTGCGATGAAGACTGCTGACGAGTACGAGAAG
GATGACAGACTTGAGGAGCTCTATGCTCAACTGGAACGCGATCCTGATCC
TGCAAGCTTTCTAGACCAT

BO09595.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RC 1488 CG3691-PC 1..1485 17..1501 7410 99.9 Plus
Pof-RA 1488 CG3691-PA 1..1485 17..1501 7410 99.9 Plus
Pof-RB 1488 CG3691-PB 1..1485 17..1501 7410 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-RC 1683 CG3691-RC 122..1606 17..1501 7410 99.9 Plus
Pof-RA 1736 CG3691-RA 175..1659 17..1501 7410 99.9 Plus
Pof-RB 1959 CG3691-RB 126..1610 17..1501 7410 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24669902..24670786 294..1178 4425 100 Plus
2R 25286936 2R 24669571..24669847 17..293 1370 99.6 Plus
2R 25286936 2R 24670846..24671040 1177..1371 975 100 Plus
2R 25286936 2R 24671098..24671228 1371..1501 655 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:37:40 has no hits.

BO09595.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:14 Download gff for BO09595.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 156..1649 17..1511 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:23 Download gff for BO09595.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 126..1610 17..1503 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:01 Download gff for BO09595.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RA 156..1640 17..1503 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:14 Download gff for BO09595.complete
Subject Subject Range Query Range Percent Splice Strand
Pof-RB 126..1610 17..1503 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:14 Download gff for BO09595.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24670848..24671039 1179..1370 100 -> Plus
2R 24671098..24671228 1371..1503 98   Plus
2R 24669571..24669847 17..293 99 -> Plus
2R 24669902..24670786 294..1178 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:23 Download gff for BO09595.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20557094..20557370 17..293 99 -> Plus
arm_2R 20557425..20558309 294..1178 100 -> Plus
arm_2R 20558371..20558562 1179..1370 100 -> Plus
arm_2R 20558621..20558751 1371..1503 98   Plus

BO09595.pep Sequence

Translation from 16 to 1519

> BO09595.pep
MDSKRAALESGDGPDAKRLDTTDDQDKEASGGDGSQVMLAKHVAPYTGHG
CTPPMESYLFEPTPAGSQLLPWKTSVDLDNDAELEKPTSDKKPDTAKLSR
RELAKMRREHTLRALALERELTNKPGQTPASEVLLVRFPDPEITAPMLAG
LSKDIRDVVLPISVAPRYCLVHLKAGADVEATICDINRVRFGTGHLRAEL
KPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREK
RARYAFVRYASPDQTMEAFKELVDSPLNSRTLTVRYRRLRKRAGMPMVQC
ATSFQALQSPNGDDDNTDCKVISPPPLESIIISDSDNCSDSSGNGKEDGK
RKKKINEQEREIEKLKRQMAEYGAIIKSLQFRQNSLEDTFIPDLTPKVEP
SVNPTGCLLGSNAVHLMRDIKKECDYLGIPDPVPATKPTTQAQDDSQKKA
KRSCFGRLFTGPFRRGTSAMKTADEYEKDDRLEELYAQLERDPDPASFLD
H

BO09595.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pof-PC 495 CG3691-PC 1..495 1..495 2576 100 Plus
Pof-PA 495 CG3691-PA 1..495 1..495 2576 100 Plus
Pof-PB 495 CG3691-PB 1..495 1..495 2576 100 Plus