Clone Sequence Records
BO09595.3prime Sequence
903 bp (796 high quality bases) assembled on 2006-01-23
> BO09595.3prime
ATGGTCTAGAAAGCTTGCAGGATCAGGATCGCGTTCCAGTTGAGCATAGA
GCTCCTCAAGTCTGTCATCCTTCTCGTACTCGTCAGCAGTCTTCATCGCA
CTAGTGCCTCGTCTGAAAGGACCCGTAAACAAGCGGCCAAAACACGATCT
TTTGGCTTTCTTCTGGCTGTCATCTTGAGCTTGTGTTGTCGGCTTGGTAG
CCGGTACGGGATCAGGGATGCCCAAATAGTCGCACTCTTTCTTAATGTCA
CGCATTAGGTGCACCGCATTGGATCCTAGTAAACAACCTGTGGGATTCAC
GCTCGGCTCTACTTTGGGTGTAAGGTCAGGTATAAATGTATCTTCTAAGC
TGTTCTGTCTAAATTGCAAACTTTTTATAATAGCGCCGTACTCGGCCATT
TGACGCTTGAGCTTTTCAATCTCTCTTTCCTGTTCATTTATCTTCTTCTT
GCGCTTGCCGTCTTCCTTGCCGTTGCCACTGGAATCTGAGCAGTTATCGC
TGTCGCTAATTATGATAGACTCTAACGGCGGTGGAGATATGACCTTGCAG
TCAGTGTTGTCGTCGTCTCCATTTGGGGATTGCAGCGCCTGAAAGGAGGT
GGCGCACTGCACCATTGGCATCCCGGCGCGCTTCCGGAGTCGCCGATAGC
GGACTGTGAGAGTGCGGCTGTTCAGCGGTGAGTCGACCAGCTCCTTGAAC
GCTTCCATGGTCTGGTCAGGTGAGGCGTAACGCACAAAGGCGTAGCGAGC
GCGCTTCTCGCGCTTCAGCACTCCGATGTCCACGCGCATGGCGTTGGCGA
AATAGGCCTTTATGGCCGATGTGGTCATGTTGAACGGTATGTTGCCCACA
TACAGAGAACAGGGATCAATGAACTCGGCCTGCTCCTCATCGGAGAACGG
CTT
BO09595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3691-PB | 1488 | Pof-RB | 601..1485 | 903..19 | 4425 | 100 | Minus |
CG3691-PA | 1488 | Pof-RA | 601..1485 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-RC | 1683 | CG3691-RC | 722..1606 | 903..19 | 4425 | 100 | Minus |
Pof-RA | 1736 | CG3691-RA | 775..1659 | 903..19 | 4425 | 100 | Minus |
Pof-RB | 1959 | CG3691-RB | 726..1610 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24670225..24670786 | 903..342 | 2810 | 100 | Minus |
2R | 25286936 | 2R | 24670846..24671040 | 343..149 | 975 | 100 | Minus |
2R | 25286936 | 2R | 24671098..24671228 | 149..19 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:15:47 has no hits.
BO09595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:23 Download gff for
BO09595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-PA | 601..1488 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:06 Download gff for
BO09595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3691-PA | 601..1488 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:25:57 Download gff for
BO09595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 726..1619 | 9..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:23 Download gff for
BO09595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 726..1619 | 9..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:23 Download gff for
BO09595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24670225..24670786 | 342..903 | 100 | -> | Minus |
2R | 24670848..24671039 | 150..341 | 100 | -> | Minus |
2R | 24671098..24671237 | 9..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:25:57 Download gff for
BO09595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20557748..20558309 | 342..903 | 100 | -> | Minus |
arm_2R | 20558371..20558562 | 150..341 | 100 | -> | Minus |
arm_2R | 20558621..20558760 | 9..149 | 97 | | Minus |
BO09595.5prime Sequence
879 bp (822 high quality bases) assembled on 2006-01-23
> BO09595.5prime
GAAGTTATCAGTCGACATGGATTCTAAACGCGCGGCCCTTGAATCCGGCG
ACGGTCCGGACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAA
GCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACC
CTACACGGGCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAAC
CGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTG
GACAACGACGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACAC
TGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACAT
TAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACA
CCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGC
TCCCATGCTGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCA
TTAGCGTGGCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGAT
GTGGAGGCCACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCA
CCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCA
TTGATCCCTGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACA
TCGGCCATAAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGT
GCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCAC
CTGACCAGACCATGGAAGCGTTCAAGGAGCTGGTCGACTCACCGCTGAAC
AGCCGCACTCTCACAGTCCGCTATCGGCG
BO09595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3691-PB | 1488 | Pof-RB | 1..863 | 17..879 | 4290 | 99.8 | Plus |
CG3691-PA | 1488 | Pof-RA | 1..863 | 17..879 | 4290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-RB | 1959 | CG3691-RB | 126..988 | 17..879 | 4300 | 99.9 | Plus |
Pof-RC | 1683 | CG3691-RC | 122..984 | 17..879 | 4300 | 99.9 | Plus |
Pof-RA | 1736 | CG3691-RA | 175..1037 | 17..879 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24669902..24670487 | 294..879 | 2930 | 100 | Plus |
2R | 25286936 | 2R | 24669571..24669847 | 17..293 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:26:59 has no hits.
BO09595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:24 Download gff for
BO09595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:07 Download gff for
BO09595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3691-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:07 Download gff for
BO09595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 126..988 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:47 Download gff for
BO09595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 126..988 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:47 Download gff for
BO09595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24669571..24669847 | 17..293 | 99 | -> | Plus |
2R | 24669902..24670487 | 294..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:07 Download gff for
BO09595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20557094..20557370 | 17..293 | 99 | -> | Plus |
arm_2R | 20557425..20558010 | 294..879 | 100 | | Plus |
BO09595.complete Sequence
1519 bp assembled on 2008-08-15
GenBank Submission: FJ631541
> BO09595.complete
GAAGTTATCAGTCGACATGGATTCTAAACGCGCGGCCCTTGAATCCGGCG
ACGGTCCGGACGCCAAGCGCCTTGATACCACCGATGATCAAGACAAAGAA
GCGTCGGGGGGCGACGGCAGTCAGGTTATGCTGGCCAAACACGTAGCACC
CTACACGGGCCACGGATGTACTCCACCGATGGAGTCCTATTTGTTCGAAC
CGACTCCCGCCGGGAGTCAACTTCTGCCGTGGAAAACTAGCGTTGATTTG
GACAACGACGCCGAGCTGGAGAAGCCCACCAGTGACAAGAAACCCGACAC
TGCCAAGTTGTCCCGTCGGGAGCTGGCCAAAATGCGCCGTGAACACACAT
TAAGGGCCCTCGCCCTGGAACGCGAGTTGACCAACAAACCGGGGCAGACA
CCCGCTTCCGAAGTGTTGCTCGTCCGCTTTCCTGATCCCGAGATTACTGC
TCCCATGCTGGCAGGACTGTCCAAGGATATTCGGGATGTGGTCTTGCCCA
TTAGCGTGGCTCCACGATACTGTCTAGTGCATCTAAAGGCCGGTGCCGAT
GTGGAGGCCACCATCTGCGACATAAACAGGGTGCGCTTCGGTACGGGGCA
CCTTCGGGCGGAGCTTAAGCCGTTCTCCGATGAGGAGCAGGCCGAGTTCA
TTGATCCCTGTTCTCTGTATGTGGGCAACATACCGTTCAACATGACCACA
TCGGCCATAAAGGCCTATTTCGCCAACGCCATGCGCGTGGACATCGGAGT
GCTGAAGCGCGAGAAGCGCGCTCGCTACGCCTTTGTGCGTTACGCCTCAC
CTGACCAGACCATGGAAGCGTTCAAGGAGCTGGTCGACTCACCGCTGAAC
AGCCGCACTCTCACAGTCCGCTATCGGCGACTCCGGAAGCGCGCCGGGAT
GCCAATGGTGCAGTGCGCCACCTCCTTTCAGGCGCTGCAATCCCCAAATG
GAGACGACGACAACACTGACTGCAAGGTCATATCTCCACCGCCGTTAGAG
TCTATCATAATTAGCGACAGCGATAACTGCTCAGATTCCAGTGGCAACGG
CAAGGAAGACGGCAAGCGCAAGAAGAAGATAAATGAACAGGAAAGAGAGA
TTGAAAAGCTCAAGCGTCAAATGGCCGAGTACGGCGCTATTATAAAAAGT
TTGCAATTTAGACAGAACAGCTTAGAAGATACATTTATACCTGACCTTAC
ACCCAAAGTAGAGCCGAGCGTGAATCCCACAGGTTGTTTACTAGGATCCA
ATGCGGTGCACCTAATGCGTGACATTAAGAAAGAGTGCGACTATTTGGGC
ATCCCTGATCCCGTACCGGCTACCAAGCCGACAACACAAGCTCAAGATGA
CAGCCAGAAGAAAGCCAAAAGATCGTGTTTTGGCCGCTTGTTTACGGGTC
CTTTCAGACGAGGCACTAGTGCGATGAAGACTGCTGACGAGTACGAGAAG
GATGACAGACTTGAGGAGCTCTATGCTCAACTGGAACGCGATCCTGATCC
TGCAAGCTTTCTAGACCAT
BO09595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-RC | 1488 | CG3691-PC | 1..1485 | 17..1501 | 7410 | 99.9 | Plus |
Pof-RA | 1488 | CG3691-PA | 1..1485 | 17..1501 | 7410 | 99.9 | Plus |
Pof-RB | 1488 | CG3691-PB | 1..1485 | 17..1501 | 7410 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-RC | 1683 | CG3691-RC | 122..1606 | 17..1501 | 7410 | 99.9 | Plus |
Pof-RA | 1736 | CG3691-RA | 175..1659 | 17..1501 | 7410 | 99.9 | Plus |
Pof-RB | 1959 | CG3691-RB | 126..1610 | 17..1501 | 7410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24669902..24670786 | 294..1178 | 4425 | 100 | Plus |
2R | 25286936 | 2R | 24669571..24669847 | 17..293 | 1370 | 99.6 | Plus |
2R | 25286936 | 2R | 24670846..24671040 | 1177..1371 | 975 | 100 | Plus |
2R | 25286936 | 2R | 24671098..24671228 | 1371..1501 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:37:40 has no hits.
BO09595.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:14 Download gff for
BO09595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RA | 156..1649 | 17..1511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:23 Download gff for
BO09595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 126..1610 | 17..1503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:01 Download gff for
BO09595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RA | 156..1640 | 17..1503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:14 Download gff for
BO09595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pof-RB | 126..1610 | 17..1503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:14 Download gff for
BO09595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24670848..24671039 | 1179..1370 | 100 | -> | Plus |
2R | 24671098..24671228 | 1371..1503 | 98 | | Plus |
2R | 24669571..24669847 | 17..293 | 99 | -> | Plus |
2R | 24669902..24670786 | 294..1178 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:23 Download gff for
BO09595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20557094..20557370 | 17..293 | 99 | -> | Plus |
arm_2R | 20557425..20558309 | 294..1178 | 100 | -> | Plus |
arm_2R | 20558371..20558562 | 1179..1370 | 100 | -> | Plus |
arm_2R | 20558621..20558751 | 1371..1503 | 98 | | Plus |
BO09595.pep Sequence
Translation from 16 to 1519
> BO09595.pep
MDSKRAALESGDGPDAKRLDTTDDQDKEASGGDGSQVMLAKHVAPYTGHG
CTPPMESYLFEPTPAGSQLLPWKTSVDLDNDAELEKPTSDKKPDTAKLSR
RELAKMRREHTLRALALERELTNKPGQTPASEVLLVRFPDPEITAPMLAG
LSKDIRDVVLPISVAPRYCLVHLKAGADVEATICDINRVRFGTGHLRAEL
KPFSDEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREK
RARYAFVRYASPDQTMEAFKELVDSPLNSRTLTVRYRRLRKRAGMPMVQC
ATSFQALQSPNGDDDNTDCKVISPPPLESIIISDSDNCSDSSGNGKEDGK
RKKKINEQEREIEKLKRQMAEYGAIIKSLQFRQNSLEDTFIPDLTPKVEP
SVNPTGCLLGSNAVHLMRDIKKECDYLGIPDPVPATKPTTQAQDDSQKKA
KRSCFGRLFTGPFRRGTSAMKTADEYEKDDRLEELYAQLERDPDPASFLD
H
BO09595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pof-PC | 495 | CG3691-PC | 1..495 | 1..495 | 2576 | 100 | Plus |
Pof-PA | 495 | CG3691-PA | 1..495 | 1..495 | 2576 | 100 | Plus |
Pof-PB | 495 | CG3691-PB | 1..495 | 1..495 | 2576 | 100 | Plus |