Clone BO09607 Report

Search the DGRC for BO09607

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG12026-RA
Protein status:BO09607.pep: Imported from assembly
Sequenced Size:829

Clone Sequence Records

BO09607.5prime Sequence

827 bp (826 high quality bases) assembled on 2006-01-28

> BO09607.5prime
GAAGTTATCAGTCGACATGGGAACGAAGATCGAGTACGTGGACACCACGC
ACCTGTACGCCTCCAAGTACATCCGCAACTCCAAGGCGATCGGTGTGCTG
TGGGCCATCTTCACCATTTGCTATGCCATCATCGGCATCGTGGCATTCGT
GACACCAGAGTGGATCGGTGATCCGGACAACGATGGAGCTGGTCGCCTGG
GCCTCTGGCAGCAGTGCCAGCGGGACGAGATCTTCGACAACTGCCGTCGA
CGATGGGAGAGCATCTTCGAAGTGCCCACATTCTCGTTTCAGTTGGCCAC
ATTCTTTATGCTGGGCGCCATAGCACTGGCCTTGCTGACCATATTCTTCT
TGGTTTGTTTGCTGTTTATGAAGTCGACGCGTGTTTTCCACCTTTGCGGT
TGGATGCAAATCATATCAGCTATTTGCATGATTGTGGCCTGCGCGGCGTT
TCCCTTTGGCTGGAATTCGGACGATTTCCGTAAGATCTGTGGACCGGAAG
CGAATCGCTTCGAGCTGGGCTTGTGCGGCATCCGCTGGGCTTATCCACTG
GCCATAATCGGTTGCATAGATGGCGTGGTCTTGGCCACTCTGGCGTTTAT
CTTGGCCACGCGGCACGTGCGCCTGCAGCCAGATCCGATATACCAGAACT
CGCTATACAAAGGTGAAATCAACAATGCTTACCTCACAGATGCCATCAGC
TTGGCGGGCTCGAGGAAATCCAACCCACGCATAACTGGCTTGAATTTGCA
GCCCATTTTGCTGGTGGCTCCGCCAAACGAGGATAGCATATCGCAGTTTT
CTCGTTATCACGCAAGCTTTCTAGACC

BO09607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12026-PB 798 CG12026-RB 1..795 17..811 3975 100 Plus
CG12026-PA 798 CG12026-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Tmhs-RA 1453 CG12026-RA 264..1058 17..811 3975 100 Plus
Tmhs-RB 1413 CG12026-RB 224..1018 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1890612..1890860 417..665 1245 100 Plus
3L 28110227 3L 1890917..1891067 661..811 755 100 Plus
3L 28110227 3L 1889807..1889948 17..158 710 100 Plus
3L 28110227 3L 1890015..1890152 155..292 690 100 Plus
3L 28110227 3L 1890317..1890452 288..423 665 99.3 Plus
Blast to na_te.dros performed on 2015-02-11 10:21:16 has no hits.

BO09607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:41 Download gff for BO09607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12026-PB 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:29 Download gff for BO09607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12026-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:55:48 Download gff for BO09607.5prime
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RB 224..1023 17..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:04 Download gff for BO09607.5prime
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RB 224..1023 17..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:04 Download gff for BO09607.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1889807..1889948 17..158 100 -> Plus
3L 1890019..1890152 159..292 100 -> Plus
3L 1890322..1890448 293..419 100 -> Plus
3L 1890615..1890857 420..662 100 -> Plus
3L 1890919..1891072 663..817 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:55:48 Download gff for BO09607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1889807..1889948 17..158 100 -> Plus
arm_3L 1890019..1890152 159..292 100 -> Plus
arm_3L 1890322..1890448 293..419 100 -> Plus
arm_3L 1890615..1890857 420..662 100 -> Plus
arm_3L 1890919..1891072 663..817 98   Plus

BO09607.3prime Sequence

827 bp (826 high quality bases) assembled on 2006-01-28

> BO09607.3prime
ATGGTCTAGAAAGCTTGCGTGATAACGAGAAAACTGCGATATGCTATCCT
CGTTTGGCGGAGCCACCAGCAAAATGGGCTGCAAATTCAAGCCAGTTATG
CGTGGGTTGGATTTCCTCGAGCCCGCCAAGCTGATGGCATCTGTGAGGTA
AGCATTGTTGATTTCACCTTTGTATAGCGAGTTCTGGTATATCGGATCTG
GCTGCAGGCGCACGTGCCGCGTGGCCAAGATAAACGCCAGAGTGGCCAAG
ACCACGCCATCTATGCAACCGATTATGGCCAGTGGATAAGCCCAGCGGAT
GCCGCACAAGCCCAGCTCGAAGCGATTCGCTTCCGGTCCACAGATCTTAC
GGAAATCGTCCGAATTCCAGCCAAAGGGAAACGCCGCGCAGGCCACAATC
ATGCAAATAGCTGATATGATTTGCATCCAACCGCAAAGGTGGAAAACACG
CGTCGACTTCATAAACAGCAAACAAACCAAGAAGAATATGGTCAGCAAGG
CCAGTGCTATGGCGCCCAGCATAAAGAATGTGGCCAACTGAAACGAGAAT
GTGGGCACTTCGAAGATGCTCTCCCATCGTCGACGGCAGTTGTCGAAGAT
CTCGTCCCGCTGGCACTGCTGCCAGAGGCCCAGGCGACCAGCTCCATCGT
TGTCCGGATCACCGATCCACTCTGGTGTCACGAATGCCACGATGCCGATG
ATGGCATAGCAAATGGTGAAGATGGCCCACAGCACACCGATCGCCTTGGA
GTTGCGGATGTACTTGGAGGCGTACAGGTGCGTGGTGTCCACGTACTCGA
TCTTCGTTCCCATGTCGACTGATAACT

BO09607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12026-PB 798 CG12026-RB 1..795 813..19 3975 100 Minus
CG12026-PA 798 CG12026-RA 1..795 813..19 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tmhs-RA 1453 CG12026-RA 264..1058 813..19 3975 100 Minus
Tmhs-RB 1413 CG12026-RB 224..1018 813..19 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1890612..1890860 413..165 1245 100 Minus
3L 28110227 3L 1890917..1891067 169..19 755 100 Minus
3L 28110227 3L 1889807..1889948 813..672 710 100 Minus
3L 28110227 3L 1890015..1890152 675..538 690 100 Minus
3L 28110227 3L 1890317..1890452 542..407 665 99.3 Minus
Blast to na_te.dros performed on 2015-02-02 18:07:51 has no hits.

BO09607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:40 Download gff for BO09607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12026-PB 1..798 16..813 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:28 Download gff for BO09607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12026-PA 1..798 16..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:29:27 Download gff for BO09607.3prime
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RB 224..1023 13..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:50:55 Download gff for BO09607.3prime
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RB 224..1023 13..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:55 Download gff for BO09607.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1889807..1889948 672..813 100 -> Minus
3L 1890019..1890152 538..671 100 -> Minus
3L 1890322..1890448 411..537 100 -> Minus
3L 1890615..1890857 168..410 100 -> Minus
3L 1890919..1891072 13..167 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:29:27 Download gff for BO09607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1889807..1889948 672..813 100 -> Minus
arm_3L 1890019..1890152 538..671 100 -> Minus
arm_3L 1890322..1890448 411..537 100 -> Minus
arm_3L 1890615..1890857 168..410 100 -> Minus
arm_3L 1890919..1891072 13..167 98   Minus

BO09607.complete Sequence

829 bp assembled on 2008-08-14

GenBank Submission: FJ631542

> BO09607.complete
GAAGTTATCAGTCGACATGGGAACGAAGATCGAGTACGTGGACACCACGC
ACCTGTACGCCTCCAAGTACATCCGCAACTCCAAGGCGATCGGTGTGCTG
TGGGCCATCTTCACCATTTGCTATGCCATCATCGGCATCGTGGCATTCGT
GACACCAGAGTGGATCGGTGATCCGGACAACGATGGAGCTGGTCGCCTGG
GCCTCTGGCAGCAGTGCCAGCGGGACGAGATCTTCGACAACTGCCGTCGA
CGATGGGAGAGCATCTTCGAAGTGCCCACATTCTCGTTTCAGTTGGCCAC
ATTCTTTATGCTGGGCGCCATAGCACTGGCCTTGCTGACCATATTCTTCT
TGGTTTGTTTGCTGTTTATGAAGTCGACGCGTGTTTTCCACCTTTGCGGT
TGGATGCAAATCATATCAGCTATTTGCATGATTGTGGCCTGCGCGGCGTT
TCCCTTTGGCTGGAATTCGGACGATTTCCGTAAGATCTGTGGACCGGAAG
CGAATCGCTTCGAGCTGGGCTTGTGCGGCATCCGCTGGGCTTATCCACTG
GCCATAATCGGTTGCATAGATGGCGTGGTCTTGGCCACTCTGGCGTTTAT
CTTGGCCACGCGGCACGTGCGCCTGCAGCCAGATCCGATATACCAGAACT
CGCTATACAAAGGTGAAATCAACAATGCTTACCTCACAGATGCCATCAGC
TTGGCGGGCTCGAGGAAATCCAACCCACGCATAACTGGCTTGAATTTGCA
GCCCATTTTGCTGGTGGCTCCGCCAAACGAGGATAGCATATCGCAGTTTT
CTCGTTATCACGCAAGCTTTCTAGACCAT

BO09607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
Tmhs-RA 798 CG12026-PA 1..795 17..811 3975 100 Plus
Tmhs-RB 798 CG12026-PB 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tmhs-RA 1453 CG12026-RA 264..1058 17..811 3975 100 Plus
Tmhs-RB 1413 CG12026-RB 224..1018 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1890612..1890860 417..665 1245 100 Plus
3L 28110227 3L 1890917..1891067 661..811 755 100 Plus
3L 28110227 3L 1889807..1889948 17..158 710 100 Plus
3L 28110227 3L 1890015..1890152 155..292 690 100 Plus
3L 28110227 3L 1890317..1890452 288..423 665 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 14:47:49 has no hits.

BO09607.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:50 Download gff for BO09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 1..798 47..844 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:25 Download gff for BO09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 264..1063 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:22 Download gff for BO09607.complete
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RB 224..1018 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:26 Download gff for BO09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG12026-RA 264..1058 17..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:00 Download gff for BO09607.complete
Subject Subject Range Query Range Percent Splice Strand
Tmhs-RB 224..1018 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:00 Download gff for BO09607.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1889807..1889948 17..158 100 -> Plus
3L 1890019..1890152 159..292 100 -> Plus
3L 1890322..1890448 293..419 100 -> Plus
3L 1890615..1890857 420..662 100 -> Plus
3L 1890919..1891067 663..813 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:22 Download gff for BO09607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1890919..1891067 663..813 98   Plus
arm_3L 1890019..1890152 159..292 100 -> Plus
arm_3L 1890322..1890448 293..419 100 -> Plus
arm_3L 1889807..1889948 17..158 100 -> Plus
arm_3L 1890615..1890857 420..662 100 -> Plus

BO09607.pep Sequence

Translation from 16 to 829

> BO09607.pep
MGTKIEYVDTTHLYASKYIRNSKAIGVLWAIFTICYAIIGIVAFVTPEWI
GDPDNDGAGRLGLWQQCQRDEIFDNCRRRWESIFEVPTFSFQLATFFMLG
AIALALLTIFFLVCLLFMKSTRVFHLCGWMQIISAICMIVACAAFPFGWN
SDDFRKICGPEANRFELGLCGIRWAYPLAIIGCIDGVVLATLAFILATRH
VRLQPDPIYQNSLYKGEINNAYLTDAISLAGSRKSNPRITGLNLQPILLV
APPNEDSISQFSRYHASFLDH

BO09607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Tmhs-PA 265 CG12026-PA 1..265 1..265 1414 100 Plus
Tmhs-PB 265 CG12026-PB 1..265 1..265 1414 100 Plus