Clone Sequence Records
BO09607.5prime Sequence
827 bp (826 high quality bases) assembled on 2006-01-28
> BO09607.5prime
GAAGTTATCAGTCGACATGGGAACGAAGATCGAGTACGTGGACACCACGC
ACCTGTACGCCTCCAAGTACATCCGCAACTCCAAGGCGATCGGTGTGCTG
TGGGCCATCTTCACCATTTGCTATGCCATCATCGGCATCGTGGCATTCGT
GACACCAGAGTGGATCGGTGATCCGGACAACGATGGAGCTGGTCGCCTGG
GCCTCTGGCAGCAGTGCCAGCGGGACGAGATCTTCGACAACTGCCGTCGA
CGATGGGAGAGCATCTTCGAAGTGCCCACATTCTCGTTTCAGTTGGCCAC
ATTCTTTATGCTGGGCGCCATAGCACTGGCCTTGCTGACCATATTCTTCT
TGGTTTGTTTGCTGTTTATGAAGTCGACGCGTGTTTTCCACCTTTGCGGT
TGGATGCAAATCATATCAGCTATTTGCATGATTGTGGCCTGCGCGGCGTT
TCCCTTTGGCTGGAATTCGGACGATTTCCGTAAGATCTGTGGACCGGAAG
CGAATCGCTTCGAGCTGGGCTTGTGCGGCATCCGCTGGGCTTATCCACTG
GCCATAATCGGTTGCATAGATGGCGTGGTCTTGGCCACTCTGGCGTTTAT
CTTGGCCACGCGGCACGTGCGCCTGCAGCCAGATCCGATATACCAGAACT
CGCTATACAAAGGTGAAATCAACAATGCTTACCTCACAGATGCCATCAGC
TTGGCGGGCTCGAGGAAATCCAACCCACGCATAACTGGCTTGAATTTGCA
GCCCATTTTGCTGGTGGCTCCGCCAAACGAGGATAGCATATCGCAGTTTT
CTCGTTATCACGCAAGCTTTCTAGACC
BO09607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12026-PB | 798 | CG12026-RB | 1..795 | 17..811 | 3975 | 100 | Plus |
CG12026-PA | 798 | CG12026-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tmhs-RA | 1453 | CG12026-RA | 264..1058 | 17..811 | 3975 | 100 | Plus |
Tmhs-RB | 1413 | CG12026-RB | 224..1018 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1890612..1890860 | 417..665 | 1245 | 100 | Plus |
3L | 28110227 | 3L | 1890917..1891067 | 661..811 | 755 | 100 | Plus |
3L | 28110227 | 3L | 1889807..1889948 | 17..158 | 710 | 100 | Plus |
3L | 28110227 | 3L | 1890015..1890152 | 155..292 | 690 | 100 | Plus |
3L | 28110227 | 3L | 1890317..1890452 | 288..423 | 665 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:21:16 has no hits.
BO09607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:41 Download gff for
BO09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12026-PB | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:29 Download gff for
BO09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12026-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:55:48 Download gff for
BO09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tmhs-RB | 224..1023 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:04 Download gff for
BO09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tmhs-RB | 224..1023 | 17..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:04 Download gff for
BO09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1889807..1889948 | 17..158 | 100 | -> | Plus |
3L | 1890019..1890152 | 159..292 | 100 | -> | Plus |
3L | 1890322..1890448 | 293..419 | 100 | -> | Plus |
3L | 1890615..1890857 | 420..662 | 100 | -> | Plus |
3L | 1890919..1891072 | 663..817 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:55:48 Download gff for
BO09607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1889807..1889948 | 17..158 | 100 | -> | Plus |
arm_3L | 1890019..1890152 | 159..292 | 100 | -> | Plus |
arm_3L | 1890322..1890448 | 293..419 | 100 | -> | Plus |
arm_3L | 1890615..1890857 | 420..662 | 100 | -> | Plus |
arm_3L | 1890919..1891072 | 663..817 | 98 | | Plus |
BO09607.3prime Sequence
827 bp (826 high quality bases) assembled on 2006-01-28
> BO09607.3prime
ATGGTCTAGAAAGCTTGCGTGATAACGAGAAAACTGCGATATGCTATCCT
CGTTTGGCGGAGCCACCAGCAAAATGGGCTGCAAATTCAAGCCAGTTATG
CGTGGGTTGGATTTCCTCGAGCCCGCCAAGCTGATGGCATCTGTGAGGTA
AGCATTGTTGATTTCACCTTTGTATAGCGAGTTCTGGTATATCGGATCTG
GCTGCAGGCGCACGTGCCGCGTGGCCAAGATAAACGCCAGAGTGGCCAAG
ACCACGCCATCTATGCAACCGATTATGGCCAGTGGATAAGCCCAGCGGAT
GCCGCACAAGCCCAGCTCGAAGCGATTCGCTTCCGGTCCACAGATCTTAC
GGAAATCGTCCGAATTCCAGCCAAAGGGAAACGCCGCGCAGGCCACAATC
ATGCAAATAGCTGATATGATTTGCATCCAACCGCAAAGGTGGAAAACACG
CGTCGACTTCATAAACAGCAAACAAACCAAGAAGAATATGGTCAGCAAGG
CCAGTGCTATGGCGCCCAGCATAAAGAATGTGGCCAACTGAAACGAGAAT
GTGGGCACTTCGAAGATGCTCTCCCATCGTCGACGGCAGTTGTCGAAGAT
CTCGTCCCGCTGGCACTGCTGCCAGAGGCCCAGGCGACCAGCTCCATCGT
TGTCCGGATCACCGATCCACTCTGGTGTCACGAATGCCACGATGCCGATG
ATGGCATAGCAAATGGTGAAGATGGCCCACAGCACACCGATCGCCTTGGA
GTTGCGGATGTACTTGGAGGCGTACAGGTGCGTGGTGTCCACGTACTCGA
TCTTCGTTCCCATGTCGACTGATAACT
BO09607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12026-PB | 798 | CG12026-RB | 1..795 | 813..19 | 3975 | 100 | Minus |
CG12026-PA | 798 | CG12026-RA | 1..795 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tmhs-RA | 1453 | CG12026-RA | 264..1058 | 813..19 | 3975 | 100 | Minus |
Tmhs-RB | 1413 | CG12026-RB | 224..1018 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1890612..1890860 | 413..165 | 1245 | 100 | Minus |
3L | 28110227 | 3L | 1890917..1891067 | 169..19 | 755 | 100 | Minus |
3L | 28110227 | 3L | 1889807..1889948 | 813..672 | 710 | 100 | Minus |
3L | 28110227 | 3L | 1890015..1890152 | 675..538 | 690 | 100 | Minus |
3L | 28110227 | 3L | 1890317..1890452 | 542..407 | 665 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:07:51 has no hits.
BO09607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:40 Download gff for
BO09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12026-PB | 1..798 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:28 Download gff for
BO09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12026-PA | 1..798 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:29:27 Download gff for
BO09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tmhs-RB | 224..1023 | 13..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:50:55 Download gff for
BO09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tmhs-RB | 224..1023 | 13..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:55 Download gff for
BO09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1889807..1889948 | 672..813 | 100 | -> | Minus |
3L | 1890019..1890152 | 538..671 | 100 | -> | Minus |
3L | 1890322..1890448 | 411..537 | 100 | -> | Minus |
3L | 1890615..1890857 | 168..410 | 100 | -> | Minus |
3L | 1890919..1891072 | 13..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:29:27 Download gff for
BO09607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1889807..1889948 | 672..813 | 100 | -> | Minus |
arm_3L | 1890019..1890152 | 538..671 | 100 | -> | Minus |
arm_3L | 1890322..1890448 | 411..537 | 100 | -> | Minus |
arm_3L | 1890615..1890857 | 168..410 | 100 | -> | Minus |
arm_3L | 1890919..1891072 | 13..167 | 98 | | Minus |
BO09607.complete Sequence
829 bp assembled on 2008-08-14
GenBank Submission: FJ631542
> BO09607.complete
GAAGTTATCAGTCGACATGGGAACGAAGATCGAGTACGTGGACACCACGC
ACCTGTACGCCTCCAAGTACATCCGCAACTCCAAGGCGATCGGTGTGCTG
TGGGCCATCTTCACCATTTGCTATGCCATCATCGGCATCGTGGCATTCGT
GACACCAGAGTGGATCGGTGATCCGGACAACGATGGAGCTGGTCGCCTGG
GCCTCTGGCAGCAGTGCCAGCGGGACGAGATCTTCGACAACTGCCGTCGA
CGATGGGAGAGCATCTTCGAAGTGCCCACATTCTCGTTTCAGTTGGCCAC
ATTCTTTATGCTGGGCGCCATAGCACTGGCCTTGCTGACCATATTCTTCT
TGGTTTGTTTGCTGTTTATGAAGTCGACGCGTGTTTTCCACCTTTGCGGT
TGGATGCAAATCATATCAGCTATTTGCATGATTGTGGCCTGCGCGGCGTT
TCCCTTTGGCTGGAATTCGGACGATTTCCGTAAGATCTGTGGACCGGAAG
CGAATCGCTTCGAGCTGGGCTTGTGCGGCATCCGCTGGGCTTATCCACTG
GCCATAATCGGTTGCATAGATGGCGTGGTCTTGGCCACTCTGGCGTTTAT
CTTGGCCACGCGGCACGTGCGCCTGCAGCCAGATCCGATATACCAGAACT
CGCTATACAAAGGTGAAATCAACAATGCTTACCTCACAGATGCCATCAGC
TTGGCGGGCTCGAGGAAATCCAACCCACGCATAACTGGCTTGAATTTGCA
GCCCATTTTGCTGGTGGCTCCGCCAAACGAGGATAGCATATCGCAGTTTT
CTCGTTATCACGCAAGCTTTCTAGACCAT
BO09607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tmhs-RA | 798 | CG12026-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Tmhs-RB | 798 | CG12026-PB | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tmhs-RA | 1453 | CG12026-RA | 264..1058 | 17..811 | 3975 | 100 | Plus |
Tmhs-RB | 1413 | CG12026-RB | 224..1018 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1890612..1890860 | 417..665 | 1245 | 100 | Plus |
3L | 28110227 | 3L | 1890917..1891067 | 661..811 | 755 | 100 | Plus |
3L | 28110227 | 3L | 1889807..1889948 | 17..158 | 710 | 100 | Plus |
3L | 28110227 | 3L | 1890015..1890152 | 155..292 | 690 | 100 | Plus |
3L | 28110227 | 3L | 1890317..1890452 | 288..423 | 665 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:47:49 has no hits.
BO09607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:50 Download gff for
BO09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12026-RA | 1..798 | 47..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:25 Download gff for
BO09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12026-RA | 264..1063 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:22 Download gff for
BO09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tmhs-RB | 224..1018 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:26 Download gff for
BO09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12026-RA | 264..1058 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:00 Download gff for
BO09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tmhs-RB | 224..1018 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:00 Download gff for
BO09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1889807..1889948 | 17..158 | 100 | -> | Plus |
3L | 1890019..1890152 | 159..292 | 100 | -> | Plus |
3L | 1890322..1890448 | 293..419 | 100 | -> | Plus |
3L | 1890615..1890857 | 420..662 | 100 | -> | Plus |
3L | 1890919..1891067 | 663..813 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:22 Download gff for
BO09607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1890919..1891067 | 663..813 | 98 | | Plus |
arm_3L | 1890019..1890152 | 159..292 | 100 | -> | Plus |
arm_3L | 1890322..1890448 | 293..419 | 100 | -> | Plus |
arm_3L | 1889807..1889948 | 17..158 | 100 | -> | Plus |
arm_3L | 1890615..1890857 | 420..662 | 100 | -> | Plus |
BO09607.pep Sequence
Translation from 16 to 829
> BO09607.pep
MGTKIEYVDTTHLYASKYIRNSKAIGVLWAIFTICYAIIGIVAFVTPEWI
GDPDNDGAGRLGLWQQCQRDEIFDNCRRRWESIFEVPTFSFQLATFFMLG
AIALALLTIFFLVCLLFMKSTRVFHLCGWMQIISAICMIVACAAFPFGWN
SDDFRKICGPEANRFELGLCGIRWAYPLAIIGCIDGVVLATLAFILATRH
VRLQPDPIYQNSLYKGEINNAYLTDAISLAGSRKSNPRITGLNLQPILLV
APPNEDSISQFSRYHASFLDH
BO09607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tmhs-PA | 265 | CG12026-PA | 1..265 | 1..265 | 1414 | 100 | Plus |
Tmhs-PB | 265 | CG12026-PB | 1..265 | 1..265 | 1414 | 100 | Plus |