Clone Sequence Records
BO09608.3prime Sequence
952 bp (898 high quality bases) assembled on 2006-01-28
> BO09608.3prime
ATGGTCTAGAAAGCTTGCAAGCACAATTTTCTCGCCCAATCTCTCAATTT
CGTCCAAAATGAAGTCCAACTCTTTGCTTTTCAGGATGGGAAAACAAGTG
AAGACCATGCGAAAGAAGTTGCCCAGATTTTTAGCTTTAAGAGGCGAGTA
ACCAATCATCAAAGTGCCGCTGTGGGCCATTTGCTCCTTAATTTTCGGGG
CCACAGTGTAAAGTCGACTCCACCATTCAGGCGTCTCCTCCTCGCTGGAC
ACCCTCATTGCTTTCGGAATGAACCAAAAGCAGACATTGGAGTACTCGTG
CTCCGGGATCACCAGTCTAAAGCGATCTCCACGCTGGCGCAGCTTGCCTT
CCAGCAACCTGGCGATGTGGATGGCGTGGTCCACCATGAGTCCATACTTT
CCATATCCGCGAGCCTTAAGCATTAGCCAGAACTTGAAAGCGTCGATCTT
GCGGCCGCACTGGACACTCTTGTTTCCCGTATCGTAGGATACATCATAGA
ACTTGTCCTGCTGGAACAAATAGTGCGCCTCGGTGCTGTTGCATCTTTCC
AGCAGACGGCCAGATTCCCTGGTCAAAAAGAGTGAACACTGCAATGGAGC
GCCGATGGTTTTGTGCGGATTCCAGGAAAACGAATTCGCCCGCTCGAGGC
CGGCAATGAGCGATCGGTTCTTGGCGGAGAGTAGTGCAGCGCCTCCCAGA
CAGGCGTCCACATGGAGCCACAGACCATGTCGTTCCGTCACATCCGCCGC
ACCATTGATATCATCAAAGGCACCCAACACAGTGGTGCCTGCAGTACAGT
TGACAAAGAACGGTTCACCGCCACGTGCCTTTGCCTCTGCGATCTTCGCC
TCCAGGTCGTCCACAGCATCTGACCCCGCTCATTGGTCCTCACGACACAC
AGTTGTAGCTGCCCCATCCCAGCCAGTTGGGCCGCTTCACGAAGCTGTAG
TG
BO09608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5618-PA | 1533 | CG5618-RA | 686..1530 | 863..19 | 4225 | 100 | Minus |
CG5618-PB | 1041 | CG5618-RB | 194..1038 | 863..19 | 4225 | 100 | Minus |
CG5618-PA | 1533 | CG5618-RA | 617..654 | 930..893 | 165 | 97.3 | Minus |
CG5618-PB | 1041 | CG5618-RB | 125..162 | 930..893 | 165 | 97.3 | Minus |
CG5618-PA | 1533 | CG5618-RA | 655..685 | 893..863 | 155 | 100 | Minus |
CG5618-PB | 1041 | CG5618-RB | 163..193 | 893..863 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5618-RE | 1750 | CG5618-RE | 713..1648 | 952..19 | 4570 | 99.5 | Minus |
CG5618-RD | 2230 | CG5618-RD | 1193..2128 | 952..19 | 4570 | 99.5 | Minus |
CG5618-RA | 1938 | CG5618-RA | 901..1836 | 952..19 | 4570 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20355531..20356282 | 952..203 | 3600 | 99.2 | Minus |
3L | 28110227 | 3L | 20356345..20356530 | 204..19 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:43:32 has no hits.
BO09608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:42 Download gff for
BO09608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-PB | 103..1041 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:30 Download gff for
BO09608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-PB | 103..1041 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:22:28 Download gff for
BO09608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 901..1842 | 11..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:33 Download gff for
BO09608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 901..1842 | 11..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:33 Download gff for
BO09608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20356345..20356536 | 11..204 | 97 | | Minus |
3L | 20355531..20356280 | 205..952 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:22:28 Download gff for
BO09608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20348631..20349380 | 205..952 | 99 | -> | Minus |
arm_3L | 20349445..20349636 | 11..204 | 97 | | Minus |
BO09608.5prime Sequence
963 bp (786 high quality bases) assembled on 2006-01-28
> BO09608.5prime
GAAGTTATCAGTCGACATGGCTGAATCAGTGGATGGAGCAGAGACTGTTG
ACCAGATTCGCGATGGCCTCATGGACGACTGGAAGATCCTGGAGAACGTA
TTCCACCTTCTCCGGAAGGAGGATACCTTCTGCGTGGATCCCCAGAAATG
GGACAAGCAGAAGATAGTCCCCTTTTTGCAGCCAGACAAACTTAAGGAAC
TGATTAACCTGAAGGTTCGAGAGACGGAAAACTGCTCGCTCGCGGAGATC
GAGGAGCTGTGCCAGCAGGTGATCCATTACTCTGTGAAAACCTCGCACGG
CCGCTTCCACAATCAGCTCTTTGGCCAGCTGGACCCGTTTGGACTGGCAG
GAGCCCTGGTCACCGAGGCCATGAACGGCAGCACATACACCTACGAAGTT
GCGCCCGTGTTTAGCTTGATCGAAACTGAGGTGATCGCGACCATCTGCAA
GTTAGCGGGATACAAGGAAGGCGATGGCATCTTTGCGCCCGGTGGCTCCA
CCTCCAACATGTACGGCATGGTTCTGGCCCGCTATAAGATCGCGCCCGAG
GTGAAGACGTCTGGAATGTTTGGAATGCGACCGCTGGTGCTCTTTACCTC
CGACGAGTCGCACTACAGCTTCGTGAAGGCGGCCAACTGGCTGGGATTGG
GCAGCTACAACTGTGTGTCGGTGAGGACCAATGAGCGGGGTCAGATGCTG
TTGGACGACCTGGAGGCGAAGATCGCAGAGGCAAAGGCACGTGGCGGTGA
ACCGTTCTTTGTNCACTGTACTGCAGGCACCACTGTGTTGGGTGCCTTTG
ATGATATCAATGGTGCGGCGGATGTGACGGAACGACATGGTCTGTGGCTC
CATGTGGACGCCTGTCTGGGAGGCGCTGCACTACTCTCCGCCAAGAAACG
ATCGCTCATTGCCGGCCTCGAGCGGGCGAATTCGTTTTCCTGGGATCCGC
ACCAAAACATCGG
BO09608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5618-PA | 1533 | CG5618-RA | 1..947 | 17..963 | 4591 | 99.3 | Plus |
CG5618-PB | 1041 | CG5618-RB | 1..455 | 509..963 | 2131 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5618-RA | 1938 | CG5618-RA | 307..1253 | 17..963 | 4649 | 99.4 | Plus |
CG5618-RE | 1750 | CG5618-RE | 487..1065 | 385..963 | 2809 | 99 | Plus |
CG5618-RD | 2230 | CG5618-RD | 967..1545 | 385..963 | 2809 | 99 | Plus |
CG5618-RE | 1750 | CG5618-RE | 307..486 | 17..196 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20355305..20355883 | 385..963 | 2809 | 99 | Plus |
3L | 28110227 | 3L | 20354798..20354987 | 195..384 | 950 | 100 | Plus |
3L | 28110227 | 3L | 20354226..20354406 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:33:12 has no hits.
BO09608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:43 Download gff for
BO09608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-PA | 1..947 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:31 Download gff for
BO09608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-PA | 1..947 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:20:43 Download gff for
BO09608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 302..1253 | 11..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:50:31 Download gff for
BO09608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 302..1253 | 11..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:50:31 Download gff for
BO09608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20354221..20354405 | 11..196 | 98 | -> | Plus |
3L | 20354800..20354987 | 197..384 | 100 | -> | Plus |
3L | 20355305..20355883 | 385..963 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:20:43 Download gff for
BO09608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20347321..20347505 | 11..196 | 98 | -> | Plus |
arm_3L | 20347900..20348087 | 197..384 | 100 | -> | Plus |
arm_3L | 20348405..20348983 | 385..963 | 98 | | Plus |
BO09608.complete Sequence
1564 bp assembled on 2008-08-14
GenBank Submission: FJ631543
> BO09608.complete
GAAGTTATCAGTCGACATGGCTGAATCAGTGGATGGAGCAGAGACTGTTG
ACCAGATTCGCGATGGCCTCATGGACGACTGGAAGATCCTGGAGAACGTA
TTCCACCTTCTCCGGAAGGAGGATACCTTCTGCGTGGATCCCCAGAAATG
GGACAAGCAGAAGATAGTCCCCTTTTTGCAGCCAGACAAACTTAAGGAAC
TGATTAACCTGAAGGTTCGAGAGACGGAAAACTGCTCGCTCGCGGAGATC
GAGGAGCTGTGCCAGCAGGTGATCCATTACTCTGTGAAAACCTCGCACGG
CCGCTTCCACAATCAGCTCTTTGGCCAGCTGGACCCGTTTGGACTGGCAG
GAGCCCTGGTCACCGAGGCCATGAACGGCAGCACATACACCTACGAAGTT
GCGCCCGTGTTTAGCTTGATCGAAACTGAGGTGATCGCGACCATCTGCAA
GTTAGCGGGATACAAGGAAGGCGATGGCATCTTTGCGCCCGGTGGCTCCA
CCTCCAACATGTACGGCATGGTTCTGGCCCGCTATAAGATCGCGCCCGAG
GTGAAGACGTCTGGAATGTTTGGAATGCGACCGCTGGTGCTCTTTACCTC
CGACGAGTCGCACTACAGCTTCGTGAAGGCGGCCAACTGGCTGGGATTGG
GCAGCTACAACTGTGTGTCGGTGAGGACCAATGAGCGGGGTCAGATGCTG
TTGGACGACCTGGAGGCGAAGATCGCAGAGGCAAAGGCACGTGGCGGTGA
ACCGTTCTTTGTCAACTGTACTGCAGGCACCACTGTGTTGGGTGCCTTTG
ATGATATCAATGGTGCGGCGGATGTGACGGAACGACATGGTCTGTGGCTC
CATGTGGACGCCTGTCTGGGAGGCGCTGCACTACTCTCCGCCAAGAACCG
ATCGCTCATTGCCGGCCTCGAGCGGGCGAATTCGTTTTCCTGGAATCCGC
ACAAAACCATCGGCGCTCCATTGCAGTGTTCACTCTTTTTGACCAGGGAA
TCTGGCCGTCTGCTGGAAAGATGCAACAGCACCGAGGCGCACTATTTGTT
CCAGCAGGACAAGTTCTATGATGTATCCTACGATACGGGAAACAAGAGTG
TCCAGTGCGGCCGCAAGATCGACGCTTTCAAGTTCTGGCTAATGCTTAAG
GCTCGCGGATATGGAAAGTATGGACTCATGGTGGACCACGCCATCCACAT
CGCCAGGTTGCTGGAAGGCAAGCTGCGCCAGCGTGGAGATCGCTTTAGAC
TGGTGATCCCGGAGCACGAGTACTCCAATGTCTGCTTTTGGTTCATTCCG
AAAGCAATGAGGGTGTCCAGCGAGGAGGAGACGCCTGAATGGTGGAGTCG
ACTTTACACTGTGGCCCCGAAAATTAAGGAGCAAATGGCCCACAGCGGCA
CTTTGATGATTGGTTACTCGCCTCTTAAAGCTAAAAATCTGGGCAACTTC
TTTCGCATGGTCTTCACTTGTTTTCCCATCCTGAAAAGCAAAGAGTTGGA
CTTCATTTTGGACGAAATTGAGAGATTGGGCGAGAAAATTGTGCTTGCAA
GCTTTCTAGACCAT
BO09608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5618-RA | 1533 | CG5618-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
CG5618-RE | 1041 | CG5618-PE | 1..1038 | 509..1546 | 5190 | 100 | Plus |
CG5618-RD | 1041 | CG5618-PD | 1..1038 | 509..1546 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5618-RA | 1938 | CG5618-RA | 307..1836 | 17..1546 | 7650 | 100 | Plus |
CG5618-RE | 1750 | CG5618-RE | 487..1648 | 385..1546 | 5810 | 100 | Plus |
CG5618-RD | 2230 | CG5618-RD | 967..2128 | 385..1546 | 5810 | 100 | Plus |
CG5618-RE | 1750 | CG5618-RE | 307..486 | 17..196 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20355305..20356282 | 385..1362 | 4890 | 100 | Plus |
3L | 28110227 | 3L | 20354798..20354987 | 195..384 | 950 | 100 | Plus |
3L | 28110227 | 3L | 20356345..20356530 | 1361..1546 | 930 | 100 | Plus |
3L | 28110227 | 3L | 20354226..20354406 | 17..197 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:36:03 has no hits.
BO09608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:53 Download gff for
BO09608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 1..1533 | 47..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:19 Download gff for
BO09608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 270..1810 | 11..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:56 Download gff for
BO09608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 307..1836 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:27 Download gff for
BO09608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 275..1804 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:20 Download gff for
BO09608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5618-RA | 307..1836 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:20 Download gff for
BO09608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20354226..20354405 | 17..196 | 100 | -> | Plus |
3L | 20354800..20354987 | 197..384 | 100 | -> | Plus |
3L | 20355305..20356280 | 385..1360 | 100 | -> | Plus |
3L | 20356345..20356530 | 1361..1548 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:56 Download gff for
BO09608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20349445..20349630 | 1361..1548 | 98 | | Plus |
arm_3L | 20347326..20347505 | 17..196 | 100 | -> | Plus |
arm_3L | 20347900..20348087 | 197..384 | 100 | -> | Plus |
arm_3L | 20348405..20349380 | 385..1360 | 100 | -> | Plus |
BO09608.pep Sequence
Translation from 16 to 1564
> BO09608.pep
MAESVDGAETVDQIRDGLMDDWKILENVFHLLRKEDTFCVDPQKWDKQKI
VPFLQPDKLKELINLKVRETENCSLAEIEELCQQVIHYSVKTSHGRFHNQ
LFGQLDPFGLAGALVTEAMNGSTYTYEVAPVFSLIETEVIATICKLAGYK
EGDGIFAPGGSTSNMYGMVLARYKIAPEVKTSGMFGMRPLVLFTSDESHY
SFVKAANWLGLGSYNCVSVRTNERGQMLLDDLEAKIAEAKARGGEPFFVN
CTAGTTVLGAFDDINGAADVTERHGLWLHVDACLGGAALLSAKNRSLIAG
LERANSFSWNPHKTIGAPLQCSLFLTRESGRLLERCNSTEAHYLFQQDKF
YDVSYDTGNKSVQCGRKIDAFKFWLMLKARGYGKYGLMVDHAIHIARLLE
GKLRQRGDRFRLVIPEHEYSNVCFWFIPKAMRVSSEEETPEWWSRLYTVA
PKIKEQMAHSGTLMIGYSPLKAKNLGNFFRMVFTCFPILKSKELDFILDE
IERLGEKIVLASFLDH
BO09608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5618-PA | 510 | CG5618-PA | 1..510 | 1..510 | 2691 | 100 | Plus |
CG5618-PE | 346 | CG5618-PE | 1..346 | 165..510 | 1830 | 100 | Plus |
CG5618-PD | 346 | CG5618-PD | 1..346 | 165..510 | 1830 | 100 | Plus |
b-PC | 514 | CG7811-PC | 60..514 | 49..508 | 1044 | 44.5 | Plus |
b-PB | 575 | CG7811-PB | 121..575 | 49..508 | 1044 | 44.5 | Plus |