Clone BO09608 Report

Search the DGRC for BO09608

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG5618-RA
Protein status:BO09608.pep: Imported from assembly
Sequenced Size:1564

Clone Sequence Records

BO09608.3prime Sequence

952 bp (898 high quality bases) assembled on 2006-01-28

> BO09608.3prime
ATGGTCTAGAAAGCTTGCAAGCACAATTTTCTCGCCCAATCTCTCAATTT
CGTCCAAAATGAAGTCCAACTCTTTGCTTTTCAGGATGGGAAAACAAGTG
AAGACCATGCGAAAGAAGTTGCCCAGATTTTTAGCTTTAAGAGGCGAGTA
ACCAATCATCAAAGTGCCGCTGTGGGCCATTTGCTCCTTAATTTTCGGGG
CCACAGTGTAAAGTCGACTCCACCATTCAGGCGTCTCCTCCTCGCTGGAC
ACCCTCATTGCTTTCGGAATGAACCAAAAGCAGACATTGGAGTACTCGTG
CTCCGGGATCACCAGTCTAAAGCGATCTCCACGCTGGCGCAGCTTGCCTT
CCAGCAACCTGGCGATGTGGATGGCGTGGTCCACCATGAGTCCATACTTT
CCATATCCGCGAGCCTTAAGCATTAGCCAGAACTTGAAAGCGTCGATCTT
GCGGCCGCACTGGACACTCTTGTTTCCCGTATCGTAGGATACATCATAGA
ACTTGTCCTGCTGGAACAAATAGTGCGCCTCGGTGCTGTTGCATCTTTCC
AGCAGACGGCCAGATTCCCTGGTCAAAAAGAGTGAACACTGCAATGGAGC
GCCGATGGTTTTGTGCGGATTCCAGGAAAACGAATTCGCCCGCTCGAGGC
CGGCAATGAGCGATCGGTTCTTGGCGGAGAGTAGTGCAGCGCCTCCCAGA
CAGGCGTCCACATGGAGCCACAGACCATGTCGTTCCGTCACATCCGCCGC
ACCATTGATATCATCAAAGGCACCCAACACAGTGGTGCCTGCAGTACAGT
TGACAAAGAACGGTTCACCGCCACGTGCCTTTGCCTCTGCGATCTTCGCC
TCCAGGTCGTCCACAGCATCTGACCCCGCTCATTGGTCCTCACGACACAC
AGTTGTAGCTGCCCCATCCCAGCCAGTTGGGCCGCTTCACGAAGCTGTAG
TG

BO09608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-PA 1533 CG5618-RA 686..1530 863..19 4225 100 Minus
CG5618-PB 1041 CG5618-RB 194..1038 863..19 4225 100 Minus
CG5618-PA 1533 CG5618-RA 617..654 930..893 165 97.3 Minus
CG5618-PB 1041 CG5618-RB 125..162 930..893 165 97.3 Minus
CG5618-PA 1533 CG5618-RA 655..685 893..863 155 100 Minus
CG5618-PB 1041 CG5618-RB 163..193 893..863 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-RE 1750 CG5618-RE 713..1648 952..19 4570 99.5 Minus
CG5618-RD 2230 CG5618-RD 1193..2128 952..19 4570 99.5 Minus
CG5618-RA 1938 CG5618-RA 901..1836 952..19 4570 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20355531..20356282 952..203 3600 99.2 Minus
3L 28110227 3L 20356345..20356530 204..19 930 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:43:32 has no hits.

BO09608.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:42 Download gff for BO09608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5618-PB 103..1041 16..952 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:30 Download gff for BO09608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5618-PB 103..1041 16..952 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:22:28 Download gff for BO09608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 901..1842 11..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:33 Download gff for BO09608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 901..1842 11..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:33 Download gff for BO09608.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20356345..20356536 11..204 97   Minus
3L 20355531..20356280 205..952 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:22:28 Download gff for BO09608.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20348631..20349380 205..952 99 -> Minus
arm_3L 20349445..20349636 11..204 97   Minus

BO09608.5prime Sequence

963 bp (786 high quality bases) assembled on 2006-01-28

> BO09608.5prime
GAAGTTATCAGTCGACATGGCTGAATCAGTGGATGGAGCAGAGACTGTTG
ACCAGATTCGCGATGGCCTCATGGACGACTGGAAGATCCTGGAGAACGTA
TTCCACCTTCTCCGGAAGGAGGATACCTTCTGCGTGGATCCCCAGAAATG
GGACAAGCAGAAGATAGTCCCCTTTTTGCAGCCAGACAAACTTAAGGAAC
TGATTAACCTGAAGGTTCGAGAGACGGAAAACTGCTCGCTCGCGGAGATC
GAGGAGCTGTGCCAGCAGGTGATCCATTACTCTGTGAAAACCTCGCACGG
CCGCTTCCACAATCAGCTCTTTGGCCAGCTGGACCCGTTTGGACTGGCAG
GAGCCCTGGTCACCGAGGCCATGAACGGCAGCACATACACCTACGAAGTT
GCGCCCGTGTTTAGCTTGATCGAAACTGAGGTGATCGCGACCATCTGCAA
GTTAGCGGGATACAAGGAAGGCGATGGCATCTTTGCGCCCGGTGGCTCCA
CCTCCAACATGTACGGCATGGTTCTGGCCCGCTATAAGATCGCGCCCGAG
GTGAAGACGTCTGGAATGTTTGGAATGCGACCGCTGGTGCTCTTTACCTC
CGACGAGTCGCACTACAGCTTCGTGAAGGCGGCCAACTGGCTGGGATTGG
GCAGCTACAACTGTGTGTCGGTGAGGACCAATGAGCGGGGTCAGATGCTG
TTGGACGACCTGGAGGCGAAGATCGCAGAGGCAAAGGCACGTGGCGGTGA
ACCGTTCTTTGTNCACTGTACTGCAGGCACCACTGTGTTGGGTGCCTTTG
ATGATATCAATGGTGCGGCGGATGTGACGGAACGACATGGTCTGTGGCTC
CATGTGGACGCCTGTCTGGGAGGCGCTGCACTACTCTCCGCCAAGAAACG
ATCGCTCATTGCCGGCCTCGAGCGGGCGAATTCGTTTTCCTGGGATCCGC
ACCAAAACATCGG

BO09608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-PA 1533 CG5618-RA 1..947 17..963 4591 99.3 Plus
CG5618-PB 1041 CG5618-RB 1..455 509..963 2131 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-RA 1938 CG5618-RA 307..1253 17..963 4649 99.4 Plus
CG5618-RE 1750 CG5618-RE 487..1065 385..963 2809 99 Plus
CG5618-RD 2230 CG5618-RD 967..1545 385..963 2809 99 Plus
CG5618-RE 1750 CG5618-RE 307..486 17..196 900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20355305..20355883 385..963 2809 99 Plus
3L 28110227 3L 20354798..20354987 195..384 950 100 Plus
3L 28110227 3L 20354226..20354406 17..197 905 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:33:12 has no hits.

BO09608.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:43 Download gff for BO09608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5618-PA 1..947 17..963 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:31 Download gff for BO09608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5618-PA 1..947 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:20:43 Download gff for BO09608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 302..1253 11..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:50:31 Download gff for BO09608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 302..1253 11..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:50:31 Download gff for BO09608.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20354221..20354405 11..196 98 -> Plus
3L 20354800..20354987 197..384 100 -> Plus
3L 20355305..20355883 385..963 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:20:43 Download gff for BO09608.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20347321..20347505 11..196 98 -> Plus
arm_3L 20347900..20348087 197..384 100 -> Plus
arm_3L 20348405..20348983 385..963 98   Plus

BO09608.complete Sequence

1564 bp assembled on 2008-08-14

GenBank Submission: FJ631543

> BO09608.complete
GAAGTTATCAGTCGACATGGCTGAATCAGTGGATGGAGCAGAGACTGTTG
ACCAGATTCGCGATGGCCTCATGGACGACTGGAAGATCCTGGAGAACGTA
TTCCACCTTCTCCGGAAGGAGGATACCTTCTGCGTGGATCCCCAGAAATG
GGACAAGCAGAAGATAGTCCCCTTTTTGCAGCCAGACAAACTTAAGGAAC
TGATTAACCTGAAGGTTCGAGAGACGGAAAACTGCTCGCTCGCGGAGATC
GAGGAGCTGTGCCAGCAGGTGATCCATTACTCTGTGAAAACCTCGCACGG
CCGCTTCCACAATCAGCTCTTTGGCCAGCTGGACCCGTTTGGACTGGCAG
GAGCCCTGGTCACCGAGGCCATGAACGGCAGCACATACACCTACGAAGTT
GCGCCCGTGTTTAGCTTGATCGAAACTGAGGTGATCGCGACCATCTGCAA
GTTAGCGGGATACAAGGAAGGCGATGGCATCTTTGCGCCCGGTGGCTCCA
CCTCCAACATGTACGGCATGGTTCTGGCCCGCTATAAGATCGCGCCCGAG
GTGAAGACGTCTGGAATGTTTGGAATGCGACCGCTGGTGCTCTTTACCTC
CGACGAGTCGCACTACAGCTTCGTGAAGGCGGCCAACTGGCTGGGATTGG
GCAGCTACAACTGTGTGTCGGTGAGGACCAATGAGCGGGGTCAGATGCTG
TTGGACGACCTGGAGGCGAAGATCGCAGAGGCAAAGGCACGTGGCGGTGA
ACCGTTCTTTGTCAACTGTACTGCAGGCACCACTGTGTTGGGTGCCTTTG
ATGATATCAATGGTGCGGCGGATGTGACGGAACGACATGGTCTGTGGCTC
CATGTGGACGCCTGTCTGGGAGGCGCTGCACTACTCTCCGCCAAGAACCG
ATCGCTCATTGCCGGCCTCGAGCGGGCGAATTCGTTTTCCTGGAATCCGC
ACAAAACCATCGGCGCTCCATTGCAGTGTTCACTCTTTTTGACCAGGGAA
TCTGGCCGTCTGCTGGAAAGATGCAACAGCACCGAGGCGCACTATTTGTT
CCAGCAGGACAAGTTCTATGATGTATCCTACGATACGGGAAACAAGAGTG
TCCAGTGCGGCCGCAAGATCGACGCTTTCAAGTTCTGGCTAATGCTTAAG
GCTCGCGGATATGGAAAGTATGGACTCATGGTGGACCACGCCATCCACAT
CGCCAGGTTGCTGGAAGGCAAGCTGCGCCAGCGTGGAGATCGCTTTAGAC
TGGTGATCCCGGAGCACGAGTACTCCAATGTCTGCTTTTGGTTCATTCCG
AAAGCAATGAGGGTGTCCAGCGAGGAGGAGACGCCTGAATGGTGGAGTCG
ACTTTACACTGTGGCCCCGAAAATTAAGGAGCAAATGGCCCACAGCGGCA
CTTTGATGATTGGTTACTCGCCTCTTAAAGCTAAAAATCTGGGCAACTTC
TTTCGCATGGTCTTCACTTGTTTTCCCATCCTGAAAAGCAAAGAGTTGGA
CTTCATTTTGGACGAAATTGAGAGATTGGGCGAGAAAATTGTGCTTGCAA
GCTTTCTAGACCAT

BO09608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-RA 1533 CG5618-PA 1..1530 17..1546 7650 100 Plus
CG5618-RE 1041 CG5618-PE 1..1038 509..1546 5190 100 Plus
CG5618-RD 1041 CG5618-PD 1..1038 509..1546 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-RA 1938 CG5618-RA 307..1836 17..1546 7650 100 Plus
CG5618-RE 1750 CG5618-RE 487..1648 385..1546 5810 100 Plus
CG5618-RD 2230 CG5618-RD 967..2128 385..1546 5810 100 Plus
CG5618-RE 1750 CG5618-RE 307..486 17..196 900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20355305..20356282 385..1362 4890 100 Plus
3L 28110227 3L 20354798..20354987 195..384 950 100 Plus
3L 28110227 3L 20356345..20356530 1361..1546 930 100 Plus
3L 28110227 3L 20354226..20354406 17..197 905 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:36:03 has no hits.

BO09608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:53 Download gff for BO09608.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 1..1533 47..1579 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:19 Download gff for BO09608.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 270..1810 11..1554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:56 Download gff for BO09608.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 307..1836 17..1548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:27 Download gff for BO09608.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 275..1804 17..1548 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:20 Download gff for BO09608.complete
Subject Subject Range Query Range Percent Splice Strand
CG5618-RA 307..1836 17..1548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:20 Download gff for BO09608.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20354226..20354405 17..196 100 -> Plus
3L 20354800..20354987 197..384 100 -> Plus
3L 20355305..20356280 385..1360 100 -> Plus
3L 20356345..20356530 1361..1548 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:56 Download gff for BO09608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20349445..20349630 1361..1548 98   Plus
arm_3L 20347326..20347505 17..196 100 -> Plus
arm_3L 20347900..20348087 197..384 100 -> Plus
arm_3L 20348405..20349380 385..1360 100 -> Plus

BO09608.pep Sequence

Translation from 16 to 1564

> BO09608.pep
MAESVDGAETVDQIRDGLMDDWKILENVFHLLRKEDTFCVDPQKWDKQKI
VPFLQPDKLKELINLKVRETENCSLAEIEELCQQVIHYSVKTSHGRFHNQ
LFGQLDPFGLAGALVTEAMNGSTYTYEVAPVFSLIETEVIATICKLAGYK
EGDGIFAPGGSTSNMYGMVLARYKIAPEVKTSGMFGMRPLVLFTSDESHY
SFVKAANWLGLGSYNCVSVRTNERGQMLLDDLEAKIAEAKARGGEPFFVN
CTAGTTVLGAFDDINGAADVTERHGLWLHVDACLGGAALLSAKNRSLIAG
LERANSFSWNPHKTIGAPLQCSLFLTRESGRLLERCNSTEAHYLFQQDKF
YDVSYDTGNKSVQCGRKIDAFKFWLMLKARGYGKYGLMVDHAIHIARLLE
GKLRQRGDRFRLVIPEHEYSNVCFWFIPKAMRVSSEEETPEWWSRLYTVA
PKIKEQMAHSGTLMIGYSPLKAKNLGNFFRMVFTCFPILKSKELDFILDE
IERLGEKIVLASFLDH

BO09608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5618-PA 510 CG5618-PA 1..510 1..510 2691 100 Plus
CG5618-PE 346 CG5618-PE 1..346 165..510 1830 100 Plus
CG5618-PD 346 CG5618-PD 1..346 165..510 1830 100 Plus
b-PC 514 CG7811-PC 60..514 49..508 1044 44.5 Plus
b-PB 575 CG7811-PB 121..575 49..508 1044 44.5 Plus