Clone Sequence Records
BO09614.3prime Sequence
629 bp (628 high quality bases) assembled on 2006-01-28
> BO09614.3prime
ATGGTCTAGAAAGCTTGCGTTTCTGCGCTGGGAGAAAACATAACGATCTC
GCAAATGGAGCAACTTTTCAAAAAACACAAATGTCAAGGTGGTGTGTGGA
GCACTACGAAAGTATATGGGCCAAAAGCCCTTGTACATCCCATGGATCCC
TTCGGTTCTCCAGATTTTAGTGAAACAGTCCACCAAGCCCTTGTACATGA
GTCCACGCCCCTTTTCATCCACTGGCTGGTTGTACATCCGTGTGGTGAGC
ACATCAAAGGGCGAATTGGCCACTGCCACAAGGGTTCCCGACGATAGGCC
GGCACAGAAGGAGAGGAGAACCGGATGGGTGATCCAGCCTTTATCCTTCA
GAAGGGACTTGGCTTTGGGAAAGGTGCCGATCTGTACACTGGAGGCCACA
AGCGTTCGGTTCAAGCTTGGTAAAGCAGCGCGCCAGAATCCTGAAATGCC
ATTGGTCCGGTAAATATGCAGCAGGGCATCCATCATCGAAGTATGCTTGT
GCTGAAAGCCTACGGCAATGGACTGAACCGCCTGGGCATGCTGTTGGGCC
TTTATCATGTAGAAGGGGCTGGCGAAATAGGTGCCCGTGCAGCCGCCCAG
AGCACCAAAGAACATGTCGACTGATAACT
BO09614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-PB | 924 | CG18324-RB | 324..921 | 616..19 | 2965 | 99.8 | Minus |
CG18324-PA | 600 | CG18324-RA | 1..597 | 615..19 | 2960 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-RA | 1401 | CG18324-RA | 677..1274 | 616..19 | 2975 | 99.8 | Minus |
CG18324-RB | 1118 | CG18324-RB | 394..991 | 616..19 | 2975 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14169569..14170106 | 556..19 | 2690 | 100 | Minus |
2R | 25286936 | 2R | 14169462..14169522 | 616..556 | 290 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:41 has no hits.
BO09614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:50 Download gff for
BO09614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-PB | 316..924 | 16..626 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:41 Download gff for
BO09614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-PB | 316..924 | 16..626 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:53:31 Download gff for
BO09614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 386..996 | 14..626 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:05 Download gff for
BO09614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 386..996 | 14..626 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:05 Download gff for
BO09614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14169454..14169522 | 556..626 | 92 | -> | Minus |
2R | 14169570..14170111 | 14..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:53:31 Download gff for
BO09614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10056959..10057027 | 556..626 | 92 | -> | Minus |
arm_2R | 10057075..10057616 | 14..555 | 99 | | Minus |
BO09614.5prime Sequence
629 bp (628 high quality bases) assembled on 2006-01-28
> BO09614.5prime
GAAGTTATCAGTCGACATGTTCTTTGGTGCTCTGGGCGGCTGCACGGGCA
CCTATTTCGCCAGCCCCTTCTACATGATAAAGGCCCAACAGCATGCCCAG
GCGGTTCAGTCCATTGCCGTAGGCTTTCAGCACAAGCATACTTCGATGAT
GGATGCCCTGCTGCATATTTACCGGACCAATGGCATTTCAGGATTCTGGC
GCGCTGCTTTACCAAGCTTGAACCGAACGCTTGTGGCCTCCAGTGTACAG
ATCGGCACCTTTCCCAAAGCCAAGTCCCTTCTGAAGGATAAAGGCTGGAT
CACCCATCCGGTTCTCCTCTCCTTCTGTGCCGGCCTATCGTCGGGAACCC
TTGTGGCAGTGGCCAATTCGCCCTTTGATGTGCTCACCACACGGATGTAC
AACCAGCCAGTGGATGAAAAGGGGCGTGGACTCATGTACAAGGGCTTGGT
GGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACA
AGGGCTTTTGGCCCATATACTTTCGTAGTGCTCCACACACCACCTTGACA
TTTGTGTTTTTTGAAAAGTTGCTCCATTTGCGAGATCGTTATGTTTTCTC
CCAGCGCAGAAACGCAAGCTTTCTAGACC
BO09614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-PB | 924 | CG18324-RB | 324..921 | 16..613 | 2965 | 99.8 | Plus |
CG18324-PA | 600 | CG18324-RA | 1..597 | 17..613 | 2960 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-RA | 1401 | CG18324-RA | 677..1274 | 16..613 | 2975 | 99.8 | Plus |
CG18324-RB | 1118 | CG18324-RB | 394..991 | 16..613 | 2975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14169569..14170106 | 76..613 | 2690 | 100 | Plus |
2R | 25286936 | 2R | 14169462..14169522 | 16..76 | 290 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:38:58 has no hits.
BO09614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:51 Download gff for
BO09614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-PB | 316..924 | 6..616 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:42 Download gff for
BO09614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-PB | 316..924 | 6..616 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:55:21 Download gff for
BO09614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 386..996 | 6..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:45 Download gff for
BO09614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 386..996 | 6..618 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:45 Download gff for
BO09614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14169454..14169522 | 6..76 | 92 | -> | Plus |
2R | 14169570..14170111 | 77..618 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:55:21 Download gff for
BO09614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10056959..10057027 | 6..76 | 92 | -> | Plus |
arm_2R | 10057075..10057616 | 77..618 | 99 | | Plus |
BO09614.complete Sequence
631 bp assembled on 2008-08-15
GenBank Submission: FJ631544
> BO09614.complete
GAAGTTATCAGTCGACATGTTCTTTGGTGCTCTGGGCGGCTGCACGGGCA
CCTATTTCGCCAGCCCCTTCTACATGATAAAGGCCCAACAGCATGCCCAG
GCGGTTCAGTCCATTGCCGTAGGCTTTCAGCACAAGCATACTTCGATGAT
GGATGCCCTGCTGCATATTTACCGGACCAATGGCATTTCAGGATTCTGGC
GCGCTGCTTTACCAAGCTTGAACCGAACGCTTGTGGCCTCCAGTGTACAG
ATCGGCACCTTTCCCAAAGCCAAGTCCCTTCTGAAGGATAAAGGCTGGAT
CACCCATCCGGTTCTCCTCTCCTTCTGTGCCGGCCTATCGTCGGGAACCC
TTGTGGCAGTGGCCAATTCGCCCTTTGATGTGCTCACCACACGGATGTAC
AACCAGCCAGTGGATGAAAAGGGGCGTGGACTCATGTACAAGGGCTTGGT
GGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACA
AGGGCTTTTGGCCCATATACTTTCGTAGTGCTCCACACACCACCTTGACA
TTTGTGTTTTTTGAAAAGTTGCTCCATTTGCGAGATCGTTATGTTTTCTC
CCAGCGCAGAAACGCAAGCTTTCTAGACCAT
BO09614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-RB | 924 | CG18324-PB | 324..921 | 16..613 | 2975 | 99.8 | Plus |
CG18324-RA | 600 | CG18324-PA | 1..597 | 17..613 | 2970 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-RA | 1401 | CG18324-RA | 677..1274 | 16..613 | 2975 | 99.8 | Plus |
CG18324-RB | 1118 | CG18324-RB | 394..991 | 16..613 | 2975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14169569..14170106 | 76..613 | 2690 | 100 | Plus |
2R | 25286936 | 2R | 14169462..14169522 | 16..76 | 290 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:54 has no hits.
BO09614.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:27 Download gff for
BO09614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RA | 585..1195 | 6..618 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:04 Download gff for
BO09614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 400..991 | 22..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:22 Download gff for
BO09614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RA | 599..1190 | 22..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:37 Download gff for
BO09614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 400..991 | 22..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:37 Download gff for
BO09614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14169468..14169522 | 22..76 | 98 | -> | Plus |
2R | 14169570..14170106 | 77..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:04 Download gff for
BO09614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10056973..10057027 | 22..76 | 98 | -> | Plus |
arm_2R | 10057075..10057611 | 77..615 | 99 | | Plus |
BO09614.pep Sequence
Translation from 16 to 631
> BO09614.pep
MFFGALGGCTGTYFASPFYMIKAQQHAQAVQSIAVGFQHKHTSMMDALLH
IYRTNGISGFWRAALPSLNRTLVASSVQIGTFPKAKSLLKDKGWITHPVL
LSFCAGLSSGTLVAVANSPFDVLTTRMYNQPVDEKGRGLMYKGLVDCFTK
IWRTEGIHGMYKGFWPIYFRSAPHTTLTFVFFEKLLHLRDRYVFSQRRNA
SFLDH
BO09614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-PA | 199 | CG18324-PA | 1..199 | 1..199 | 1062 | 100 | Plus |
CG18324-PB | 307 | CG18324-PB | 109..307 | 1..199 | 1062 | 100 | Plus |
CG18327-PB | 304 | CG18327-PB | 109..300 | 1..192 | 622 | 56.8 | Plus |
CG18327-PA | 304 | CG18327-PA | 109..300 | 1..192 | 622 | 56.8 | Plus |
CG8323-PA | 303 | CG8323-PA | 109..300 | 1..192 | 558 | 52.6 | Plus |