Clone BO09614 Report

Search the DGRC for BO09614

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG18324-RA
Protein status:BO09614.pep: Imported from assembly
Sequenced Size:631

Clone Sequence Records

BO09614.3prime Sequence

629 bp (628 high quality bases) assembled on 2006-01-28

> BO09614.3prime
ATGGTCTAGAAAGCTTGCGTTTCTGCGCTGGGAGAAAACATAACGATCTC
GCAAATGGAGCAACTTTTCAAAAAACACAAATGTCAAGGTGGTGTGTGGA
GCACTACGAAAGTATATGGGCCAAAAGCCCTTGTACATCCCATGGATCCC
TTCGGTTCTCCAGATTTTAGTGAAACAGTCCACCAAGCCCTTGTACATGA
GTCCACGCCCCTTTTCATCCACTGGCTGGTTGTACATCCGTGTGGTGAGC
ACATCAAAGGGCGAATTGGCCACTGCCACAAGGGTTCCCGACGATAGGCC
GGCACAGAAGGAGAGGAGAACCGGATGGGTGATCCAGCCTTTATCCTTCA
GAAGGGACTTGGCTTTGGGAAAGGTGCCGATCTGTACACTGGAGGCCACA
AGCGTTCGGTTCAAGCTTGGTAAAGCAGCGCGCCAGAATCCTGAAATGCC
ATTGGTCCGGTAAATATGCAGCAGGGCATCCATCATCGAAGTATGCTTGT
GCTGAAAGCCTACGGCAATGGACTGAACCGCCTGGGCATGCTGTTGGGCC
TTTATCATGTAGAAGGGGCTGGCGAAATAGGTGCCCGTGCAGCCGCCCAG
AGCACCAAAGAACATGTCGACTGATAACT

BO09614.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-PB 924 CG18324-RB 324..921 616..19 2965 99.8 Minus
CG18324-PA 600 CG18324-RA 1..597 615..19 2960 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-RA 1401 CG18324-RA 677..1274 616..19 2975 99.8 Minus
CG18324-RB 1118 CG18324-RB 394..991 616..19 2975 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14169569..14170106 556..19 2690 100 Minus
2R 25286936 2R 14169462..14169522 616..556 290 98.4 Minus
Blast to na_te.dros performed on 2015-02-10 20:53:41 has no hits.

BO09614.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:50 Download gff for BO09614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-PB 316..924 16..626 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:41 Download gff for BO09614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-PB 316..924 16..626 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:53:31 Download gff for BO09614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 386..996 14..626 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:05 Download gff for BO09614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 386..996 14..626 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:05 Download gff for BO09614.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14169454..14169522 556..626 92 -> Minus
2R 14169570..14170111 14..555 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:53:31 Download gff for BO09614.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10056959..10057027 556..626 92 -> Minus
arm_2R 10057075..10057616 14..555 99   Minus

BO09614.5prime Sequence

629 bp (628 high quality bases) assembled on 2006-01-28

> BO09614.5prime
GAAGTTATCAGTCGACATGTTCTTTGGTGCTCTGGGCGGCTGCACGGGCA
CCTATTTCGCCAGCCCCTTCTACATGATAAAGGCCCAACAGCATGCCCAG
GCGGTTCAGTCCATTGCCGTAGGCTTTCAGCACAAGCATACTTCGATGAT
GGATGCCCTGCTGCATATTTACCGGACCAATGGCATTTCAGGATTCTGGC
GCGCTGCTTTACCAAGCTTGAACCGAACGCTTGTGGCCTCCAGTGTACAG
ATCGGCACCTTTCCCAAAGCCAAGTCCCTTCTGAAGGATAAAGGCTGGAT
CACCCATCCGGTTCTCCTCTCCTTCTGTGCCGGCCTATCGTCGGGAACCC
TTGTGGCAGTGGCCAATTCGCCCTTTGATGTGCTCACCACACGGATGTAC
AACCAGCCAGTGGATGAAAAGGGGCGTGGACTCATGTACAAGGGCTTGGT
GGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACA
AGGGCTTTTGGCCCATATACTTTCGTAGTGCTCCACACACCACCTTGACA
TTTGTGTTTTTTGAAAAGTTGCTCCATTTGCGAGATCGTTATGTTTTCTC
CCAGCGCAGAAACGCAAGCTTTCTAGACC

BO09614.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-PB 924 CG18324-RB 324..921 16..613 2965 99.8 Plus
CG18324-PA 600 CG18324-RA 1..597 17..613 2960 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-RA 1401 CG18324-RA 677..1274 16..613 2975 99.8 Plus
CG18324-RB 1118 CG18324-RB 394..991 16..613 2975 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14169569..14170106 76..613 2690 100 Plus
2R 25286936 2R 14169462..14169522 16..76 290 98.4 Plus
Blast to na_te.dros performed on 2015-02-04 03:38:58 has no hits.

BO09614.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:51 Download gff for BO09614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-PB 316..924 6..616 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:42 Download gff for BO09614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-PB 316..924 6..616 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:55:21 Download gff for BO09614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 386..996 6..618 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:45 Download gff for BO09614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 386..996 6..618 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:45 Download gff for BO09614.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14169454..14169522 6..76 92 -> Plus
2R 14169570..14170111 77..618 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:55:21 Download gff for BO09614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10056959..10057027 6..76 92 -> Plus
arm_2R 10057075..10057616 77..618 99   Plus

BO09614.complete Sequence

631 bp assembled on 2008-08-15

GenBank Submission: FJ631544

> BO09614.complete
GAAGTTATCAGTCGACATGTTCTTTGGTGCTCTGGGCGGCTGCACGGGCA
CCTATTTCGCCAGCCCCTTCTACATGATAAAGGCCCAACAGCATGCCCAG
GCGGTTCAGTCCATTGCCGTAGGCTTTCAGCACAAGCATACTTCGATGAT
GGATGCCCTGCTGCATATTTACCGGACCAATGGCATTTCAGGATTCTGGC
GCGCTGCTTTACCAAGCTTGAACCGAACGCTTGTGGCCTCCAGTGTACAG
ATCGGCACCTTTCCCAAAGCCAAGTCCCTTCTGAAGGATAAAGGCTGGAT
CACCCATCCGGTTCTCCTCTCCTTCTGTGCCGGCCTATCGTCGGGAACCC
TTGTGGCAGTGGCCAATTCGCCCTTTGATGTGCTCACCACACGGATGTAC
AACCAGCCAGTGGATGAAAAGGGGCGTGGACTCATGTACAAGGGCTTGGT
GGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACA
AGGGCTTTTGGCCCATATACTTTCGTAGTGCTCCACACACCACCTTGACA
TTTGTGTTTTTTGAAAAGTTGCTCCATTTGCGAGATCGTTATGTTTTCTC
CCAGCGCAGAAACGCAAGCTTTCTAGACCAT

BO09614.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-RB 924 CG18324-PB 324..921 16..613 2975 99.8 Plus
CG18324-RA 600 CG18324-PA 1..597 17..613 2970 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-RA 1401 CG18324-RA 677..1274 16..613 2975 99.8 Plus
CG18324-RB 1118 CG18324-RB 394..991 16..613 2975 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14169569..14170106 76..613 2690 100 Plus
2R 25286936 2R 14169462..14169522 16..76 290 98.4 Plus
Blast to na_te.dros performed on 2014-11-28 00:16:54 has no hits.

BO09614.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:27 Download gff for BO09614.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RA 585..1195 6..618 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:04 Download gff for BO09614.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 400..991 22..615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:22 Download gff for BO09614.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RA 599..1190 22..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:37 Download gff for BO09614.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 400..991 22..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:37 Download gff for BO09614.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14169468..14169522 22..76 98 -> Plus
2R 14169570..14170106 77..615 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:04 Download gff for BO09614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10056973..10057027 22..76 98 -> Plus
arm_2R 10057075..10057611 77..615 99   Plus

BO09614.pep Sequence

Translation from 16 to 631

> BO09614.pep
MFFGALGGCTGTYFASPFYMIKAQQHAQAVQSIAVGFQHKHTSMMDALLH
IYRTNGISGFWRAALPSLNRTLVASSVQIGTFPKAKSLLKDKGWITHPVL
LSFCAGLSSGTLVAVANSPFDVLTTRMYNQPVDEKGRGLMYKGLVDCFTK
IWRTEGIHGMYKGFWPIYFRSAPHTTLTFVFFEKLLHLRDRYVFSQRRNA
SFLDH

BO09614.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-PA 199 CG18324-PA 1..199 1..199 1062 100 Plus
CG18324-PB 307 CG18324-PB 109..307 1..199 1062 100 Plus
CG18327-PB 304 CG18327-PB 109..300 1..192 622 56.8 Plus
CG18327-PA 304 CG18327-PA 109..300 1..192 622 56.8 Plus
CG8323-PA 303 CG8323-PA 109..300 1..192 558 52.6 Plus