Clone Sequence Records
BO09615.3prime Sequence
958 bp (924 high quality bases) assembled on 2006-01-28
> BO09615.3prime
ATGGTCTAGAAAGCTTGCGTTGCAGGCGGCATTGAGCGCCAGCGCCCCCT
CCGCACTGGTCGATGGCCCGACCTCGTGGACATTGTTGTAGTCCGCTTTG
GCATTGCACTTTGCTGAACTCTGATCCTGTATGCTTCCGTTCAGGCCACC
GCTCTTCAGCGAGTAGATCCCCAGGCGCGCCTCGTGCTCCCGTCGTTGCT
GCCGCAGCCGGATGTCGTGCTCCTCGCGCATGTGCCGCAGCTTGAGGTCC
TGCTCCTGCCGGTAGTAGGCCATCTTCACCTCCTGCTCCATCTGCTCGAA
GCGCAGCTTCTGCTCGTGTTCCCGCCGGGCGTAGTCGATTTCGGCCAGAC
GGGCCTGCTTGAGCAGCCTAAACAGGTCCTGCTTGTACTTCTGCTCTATC
TCCGTGGCGGCGACCAAATCTAAGGACTGGCTATTTGTGTCTGCAACTGG
GGTGGCGCTCGGAGCTGCGTTGGTGGAGGCTTCGTTCTCGTCGGACAGCA
GCGACTGGGCCTGTGAGAGATTCCTTTGTCGCCGCTTTCGTGGTGGGCCT
ACGCCCTTTTCGTTCTCCTCCCCCGTTTCGCCGGACGTTTCTGTCTTGGC
GCCCGAGGGCGACTGCTTGGCCTTGGTCCGCTTGCGTCGCTGGGCTGGCA
GCTGGGCGGGATTTCCCTCCTGCTGGGAGTCCCCGTCTCCGCCAGCAGTG
GAGGGCGGCGGCGAGGGGATGGCTATTGTGGAGGTCTGCAGCGTGTCCTC
GCTGGCGTTCGTAGAGTTGGGCAGAGCGGCCAGCGGCATGTCTTCGTCCT
CGTCGATGTCCATGAGCTCCTTCTTAAGAGCGCCGTTTGTGTTCGCGCTG
CGTGTCTGACTGCGCGAGGTGACCGGATCCTTCTGCATCTCCTCCAGGAA
CTCAATCATCCGCATGCCTTCCAGGGCCTCCGTTTTCGGATGCTTCTGCT
GGTGCTCC
BO09615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-PA | 1362 | CG3548-RA | 420..1359 | 958..19 | 4675 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-RA | 2218 | CG3548-RA | 521..1460 | 958..19 | 4685 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24601109..24601609 | 519..19 | 2505 | 100 | Minus |
2R | 25286936 | 2R | 24600542..24600980 | 958..520 | 2180 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:37:24 has no hits.
BO09615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:52 Download gff for
BO09615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-PA | 420..1362 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:43 Download gff for
BO09615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-PA | 420..1362 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:02:08 Download gff for
BO09615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 521..1460 | 19..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:06:35 Download gff for
BO09615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 521..1460 | 19..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:06:35 Download gff for
BO09615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24600542..24600980 | 520..958 | 99 | -> | Minus |
2R | 24601109..24601609 | 19..519 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:02:08 Download gff for
BO09615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20488065..20488503 | 520..958 | 99 | -> | Minus |
arm_2R | 20488632..20489132 | 19..519 | 100 | | Minus |
BO09615.5prime Sequence
904 bp (800 high quality bases) assembled on 2006-01-28
> BO09615.5prime
GAAGTTATCAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCT
CCTCTCCGCCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCG
CAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGA
TGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGG
GCACGCGCAAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTG
CTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGT
GGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCA
AGCAGTTCAATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAG
GTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAA
GCATCCGAAAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGG
AGGAGATGCAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCG
AACACAAACGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGA
AGACATGCCGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACA
CGCTGCAGACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCT
GGCGGAGACGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGC
CCAGCGACGCAAGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGA
CAGAAACGTCCGGCGAAACGGGGGAGGAGAACGAAAAGGGCGTAGGCCCA
CCACGAAAGCGGCGACNAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTC
CGAC
BO09615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-PA | 1362 | CG3548-RA | 1..888 | 17..904 | 4396 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-RA | 2218 | CG3548-RA | 102..989 | 17..904 | 4414 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24600461..24600980 | 355..874 | 2574 | 99.6 | Plus |
2R | 25286936 | 2R | 24600048..24600387 | 17..356 | 1700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:18:33 has no hits.
BO09615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:53 Download gff for
BO09615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:45 Download gff for
BO09615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:28 Download gff for
BO09615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 102..989 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:12 Download gff for
BO09615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 102..989 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:12 Download gff for
BO09615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24600048..24600385 | 17..354 | 100 | -> | Plus |
2R | 24600461..24600980 | 355..874 | 99 | -> | Plus |
2R | 24601109..24601138 | 875..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:28 Download gff for
BO09615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20487571..20487908 | 17..354 | 100 | -> | Plus |
arm_2R | 20487984..20488503 | 355..874 | 99 | -> | Plus |
arm_2R | 20488632..20488661 | 875..904 | 100 | | Plus |
BO09615.complete Sequence
1393 bp assembled on 2008-08-15
GenBank Submission: FJ631545
> BO09615.complete
GAAGTTATCAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCT
CCTCTCCGCCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCG
CAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGA
TGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGG
GCACGCGCAAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTG
CTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGT
GGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCA
AGCAGTTCAATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAG
GTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAA
GCATCCGAAAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGG
AGGAGATGCAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCG
AACACAAACGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGA
AGACATGCCGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACA
CGCTGCAGACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCT
GGCGGAGACGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGC
CCAGCGACGCAAGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGA
CAGAAACGTCCGGCGAAACGGGGGAGGAGAACGAAAAGGGCGTAGGCCCA
CCACGAAAGCGGCGACAAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTC
CGACGAGAACGAAGCCTCCACCAACGCAGCTCCGAGCGCCACCCCAGTTG
CAGACACAAATAGCCAGTCCTTAGATTTGGTCGCCGCCACGGAGATAGAG
CAGAAGTACAAGCAGGACCTGTTTAGGCTGCTCAAGCAGGCCCGTCTGGC
CGAAATCGACTACGCCCGGCGGGAACACGAGCAGAAGCTGCGCTTCGAGC
AGATGGAGCAGGAGGTGAAGATGGCCTACTACCGGCAGGAGCAGGACCTC
AAGCTGCGGCACATGCGCGAGGAGCACGACATCCGGCTGCGGCAGCAACG
ACGGGAGCACGAGGCGCGCCTGGGGATCTACTCGCTGAAGAGCGGTGGCC
TGAACGGAAGCATACAGGATCAGAGTTCAGCAAAGTGCAATGCCAAAGCG
GACTACAACAATGTCCACGAGGTCGGGCCATCGACCAGTGCGGAGGGGGC
GCTGGCGCTCAATGCCGCCTGCAACGCAAGCTTTCTAGACCAT
BO09615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-RA | 1362 | CG3548-PA | 1..1359 | 17..1375 | 6780 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-RA | 2218 | CG3548-RA | 102..1460 | 17..1375 | 6780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24600461..24600980 | 355..874 | 2585 | 99.8 | Plus |
2R | 25286936 | 2R | 24601109..24601609 | 875..1375 | 2505 | 100 | Plus |
2R | 25286936 | 2R | 24600048..24600387 | 17..356 | 1700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:03:03 has no hits.
BO09615.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:54 Download gff for
BO09615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 83..1441 | 17..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:45 Download gff for
BO09615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 102..1460 | 17..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:31 Download gff for
BO09615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 83..1441 | 17..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:48 Download gff for
BO09615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 102..1460 | 17..1377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:48 Download gff for
BO09615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24600048..24600385 | 17..354 | 100 | -> | Plus |
2R | 24600461..24600980 | 355..874 | 99 | -> | Plus |
2R | 24601109..24601609 | 875..1377 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:45 Download gff for
BO09615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20487571..20487908 | 17..354 | 100 | -> | Plus |
arm_2R | 20487984..20488503 | 355..874 | 99 | -> | Plus |
arm_2R | 20488632..20489132 | 875..1377 | 99 | | Plus |
BO09615.pep Sequence
Translation from 16 to 1393
> BO09615.pep
MKLEELLTKGASSPPEDDDEDEKVELKPQKSSSATADEGAENAEDAAEDA
GEKEGAGGKKKGTRKKRSLNWEEAERGLLLEVIKSKVAFVENRSVDAKSI
KAKRLAWSQITKQFNALNFRHRLLEQIQVQWRSMKNSAKREHQQKHPKTE
ALEGMRMIEFLEEMQKDPVTSRSQTRSANTNGALKKELMDIDEDEDMPLA
ALPNSTNASEDTLQTSTIAIPSPPPSTAGGDGDSQQEGNPAQLPAQRRKR
TKAKQSPSGAKTETSGETGEENEKGVGPPRKRRQRNLSQAQSLLSDENEA
STNAAPSATPVADTNSQSLDLVAATEIEQKYKQDLFRLLKQARLAEIDYA
RREHEQKLRFEQMEQEVKMAYYRQEQDLKLRHMREEHDIRLRQQRREHEA
RLGIYSLKSGGLNGSIQDQSSAKCNAKADYNNVHEVGPSTSAEGALALNA
ACNASFLDH
BO09615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-PA | 453 | CG3548-PA | 1..453 | 1..453 | 2292 | 100 | Plus |