Clone BO09615 Report

Search the DGRC for BO09615

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG3548-RA
Protein status:BO09615.pep: Imported from assembly
Sequenced Size:1393

Clone Sequence Records

BO09615.3prime Sequence

958 bp (924 high quality bases) assembled on 2006-01-28

> BO09615.3prime
ATGGTCTAGAAAGCTTGCGTTGCAGGCGGCATTGAGCGCCAGCGCCCCCT
CCGCACTGGTCGATGGCCCGACCTCGTGGACATTGTTGTAGTCCGCTTTG
GCATTGCACTTTGCTGAACTCTGATCCTGTATGCTTCCGTTCAGGCCACC
GCTCTTCAGCGAGTAGATCCCCAGGCGCGCCTCGTGCTCCCGTCGTTGCT
GCCGCAGCCGGATGTCGTGCTCCTCGCGCATGTGCCGCAGCTTGAGGTCC
TGCTCCTGCCGGTAGTAGGCCATCTTCACCTCCTGCTCCATCTGCTCGAA
GCGCAGCTTCTGCTCGTGTTCCCGCCGGGCGTAGTCGATTTCGGCCAGAC
GGGCCTGCTTGAGCAGCCTAAACAGGTCCTGCTTGTACTTCTGCTCTATC
TCCGTGGCGGCGACCAAATCTAAGGACTGGCTATTTGTGTCTGCAACTGG
GGTGGCGCTCGGAGCTGCGTTGGTGGAGGCTTCGTTCTCGTCGGACAGCA
GCGACTGGGCCTGTGAGAGATTCCTTTGTCGCCGCTTTCGTGGTGGGCCT
ACGCCCTTTTCGTTCTCCTCCCCCGTTTCGCCGGACGTTTCTGTCTTGGC
GCCCGAGGGCGACTGCTTGGCCTTGGTCCGCTTGCGTCGCTGGGCTGGCA
GCTGGGCGGGATTTCCCTCCTGCTGGGAGTCCCCGTCTCCGCCAGCAGTG
GAGGGCGGCGGCGAGGGGATGGCTATTGTGGAGGTCTGCAGCGTGTCCTC
GCTGGCGTTCGTAGAGTTGGGCAGAGCGGCCAGCGGCATGTCTTCGTCCT
CGTCGATGTCCATGAGCTCCTTCTTAAGAGCGCCGTTTGTGTTCGCGCTG
CGTGTCTGACTGCGCGAGGTGACCGGATCCTTCTGCATCTCCTCCAGGAA
CTCAATCATCCGCATGCCTTCCAGGGCCTCCGTTTTCGGATGCTTCTGCT
GGTGCTCC

BO09615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-PA 1362 CG3548-RA 420..1359 958..19 4675 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 2218 CG3548-RA 521..1460 958..19 4685 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24601109..24601609 519..19 2505 100 Minus
2R 25286936 2R 24600542..24600980 958..520 2180 99.8 Minus
Blast to na_te.dros performed on 2015-01-31 12:37:24 has no hits.

BO09615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:52 Download gff for BO09615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-PA 420..1362 18..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:43 Download gff for BO09615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-PA 420..1362 18..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:02:08 Download gff for BO09615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 521..1460 19..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:06:35 Download gff for BO09615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 521..1460 19..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:06:35 Download gff for BO09615.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24600542..24600980 520..958 99 -> Minus
2R 24601109..24601609 19..519 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:02:08 Download gff for BO09615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20488065..20488503 520..958 99 -> Minus
arm_2R 20488632..20489132 19..519 100   Minus

BO09615.5prime Sequence

904 bp (800 high quality bases) assembled on 2006-01-28

> BO09615.5prime
GAAGTTATCAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCT
CCTCTCCGCCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCG
CAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGA
TGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGG
GCACGCGCAAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTG
CTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGT
GGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCA
AGCAGTTCAATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAG
GTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAA
GCATCCGAAAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGG
AGGAGATGCAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCG
AACACAAACGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGA
AGACATGCCGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACA
CGCTGCAGACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCT
GGCGGAGACGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGC
CCAGCGACGCAAGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGA
CAGAAACGTCCGGCGAAACGGGGGAGGAGAACGAAAAGGGCGTAGGCCCA
CCACGAAAGCGGCGACNAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTC
CGAC

BO09615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-PA 1362 CG3548-RA 1..888 17..904 4396 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 2218 CG3548-RA 102..989 17..904 4414 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24600461..24600980 355..874 2574 99.6 Plus
2R 25286936 2R 24600048..24600387 17..356 1700 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:18:33 has no hits.

BO09615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:15:53 Download gff for BO09615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:45 Download gff for BO09615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:28 Download gff for BO09615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..989 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:12 Download gff for BO09615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..989 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:12 Download gff for BO09615.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24600048..24600385 17..354 100 -> Plus
2R 24600461..24600980 355..874 99 -> Plus
2R 24601109..24601138 875..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:28 Download gff for BO09615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20487571..20487908 17..354 100 -> Plus
arm_2R 20487984..20488503 355..874 99 -> Plus
arm_2R 20488632..20488661 875..904 100   Plus

BO09615.complete Sequence

1393 bp assembled on 2008-08-15

GenBank Submission: FJ631545

> BO09615.complete
GAAGTTATCAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCT
CCTCTCCGCCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCG
CAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGA
TGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGG
GCACGCGCAAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTG
CTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGT
GGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCA
AGCAGTTCAATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAG
GTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAA
GCATCCGAAAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGG
AGGAGATGCAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCG
AACACAAACGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGA
AGACATGCCGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACA
CGCTGCAGACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCT
GGCGGAGACGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGC
CCAGCGACGCAAGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGA
CAGAAACGTCCGGCGAAACGGGGGAGGAGAACGAAAAGGGCGTAGGCCCA
CCACGAAAGCGGCGACAAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTC
CGACGAGAACGAAGCCTCCACCAACGCAGCTCCGAGCGCCACCCCAGTTG
CAGACACAAATAGCCAGTCCTTAGATTTGGTCGCCGCCACGGAGATAGAG
CAGAAGTACAAGCAGGACCTGTTTAGGCTGCTCAAGCAGGCCCGTCTGGC
CGAAATCGACTACGCCCGGCGGGAACACGAGCAGAAGCTGCGCTTCGAGC
AGATGGAGCAGGAGGTGAAGATGGCCTACTACCGGCAGGAGCAGGACCTC
AAGCTGCGGCACATGCGCGAGGAGCACGACATCCGGCTGCGGCAGCAACG
ACGGGAGCACGAGGCGCGCCTGGGGATCTACTCGCTGAAGAGCGGTGGCC
TGAACGGAAGCATACAGGATCAGAGTTCAGCAAAGTGCAATGCCAAAGCG
GACTACAACAATGTCCACGAGGTCGGGCCATCGACCAGTGCGGAGGGGGC
GCTGGCGCTCAATGCCGCCTGCAACGCAAGCTTTCTAGACCAT

BO09615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 1362 CG3548-PA 1..1359 17..1375 6780 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 2218 CG3548-RA 102..1460 17..1375 6780 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24600461..24600980 355..874 2585 99.8 Plus
2R 25286936 2R 24601109..24601609 875..1375 2505 100 Plus
2R 25286936 2R 24600048..24600387 17..356 1700 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:03:03 has no hits.

BO09615.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:54 Download gff for BO09615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 83..1441 17..1375 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:45 Download gff for BO09615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..1460 17..1377 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:31 Download gff for BO09615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 83..1441 17..1377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:48 Download gff for BO09615.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..1460 17..1377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:48 Download gff for BO09615.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24600048..24600385 17..354 100 -> Plus
2R 24600461..24600980 355..874 99 -> Plus
2R 24601109..24601609 875..1377 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:45 Download gff for BO09615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20487571..20487908 17..354 100 -> Plus
arm_2R 20487984..20488503 355..874 99 -> Plus
arm_2R 20488632..20489132 875..1377 99   Plus

BO09615.pep Sequence

Translation from 16 to 1393

> BO09615.pep
MKLEELLTKGASSPPEDDDEDEKVELKPQKSSSATADEGAENAEDAAEDA
GEKEGAGGKKKGTRKKRSLNWEEAERGLLLEVIKSKVAFVENRSVDAKSI
KAKRLAWSQITKQFNALNFRHRLLEQIQVQWRSMKNSAKREHQQKHPKTE
ALEGMRMIEFLEEMQKDPVTSRSQTRSANTNGALKKELMDIDEDEDMPLA
ALPNSTNASEDTLQTSTIAIPSPPPSTAGGDGDSQQEGNPAQLPAQRRKR
TKAKQSPSGAKTETSGETGEENEKGVGPPRKRRQRNLSQAQSLLSDENEA
STNAAPSATPVADTNSQSLDLVAATEIEQKYKQDLFRLLKQARLAEIDYA
RREHEQKLRFEQMEQEVKMAYYRQEQDLKLRHMREEHDIRLRQQRREHEA
RLGIYSLKSGGLNGSIQDQSSAKCNAKADYNNVHEVGPSTSAEGALALNA
ACNASFLDH

BO09615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-PA 453 CG3548-PA 1..453 1..453 2292 100 Plus