Clone Sequence Records
BO09621.3prime Sequence
939 bp (804 high quality bases) assembled on 2006-01-28
> BO09621.3prime
ATGGTCTAGAAAGCTTGCGTGAAGGTGTGTGCTCCAGTAGTTAATGATCG
GCTGATCGTGCGGCTGCACGCCAAGCACCTTCTTAAGTTTGCCCTGCACG
CTGGTGGATTTGGCATGGTTGAGGCAGGTCACTTTGTTTTTCCACTCTTC
GATGAGCACCTTGGTCTGCTTGTTCAGCACGAGTTCTGTGAAGTTTTTCT
CCTCCACCGCCTTTAAAAGTTTCACCATAAGATCTGGCAATTTTCGTGGC
AGCTCTCCTGGCCATTTGACCGACACCTCGTGTCCGTTGACGTGTTTGTC
CAGAAAATCGATCCGATAAACGGAGCTACTGGCCATTGGCACGGCTATGT
CATTGGACACGGATATGATTTTGTACTCGGAGCTGATGGAGTGTTGATGT
TGGGCATCGATTCGCATTAGATTGTGCATGGGCTCGGGCAGGAGTTTCTT
CAGGCAGACCATGAAACGGAAGGTCTTTCTGGGATCACCTCTGACCACAA
TCTTCACCCCAGTCAAGGCACAATAGCAGACCGTGGCAAACTCCTCCTTG
CGGACGACACTCTTGAGATGGCGCAACGAGAAGAACTCCTCCAGATCGGG
ATCGTCGATGCTCTCTATCATTGGCAGTGTGGAACTGTTGTAGGTGAGTC
GCTGTGCGGGAGGACGGCCACTACTTTGTGGCGGTAGCCACGGTAGGTTG
CCGAAGGTCACGTGCTCGGTGAGGAAGCGGGATCCGGCTAGCAGGAGCCA
CGAGAAGTGTGAGTGCAACTGGGCGAAGATGTGCTCCTCGCCTGTTAGCT
CCAGCAAGGCACGGGAAGTGGGCATCANGAACTGAGCGCCGGACAGACGC
CTCTGTCGCTCTGAGTACGTCTGCTCCTCCGTCTCCTTGGTCTTTTTGGC
AGCTGCCTGCAGCTCCGACGACACCTTCTTCAGGTGCTC
BO09621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8616-PA | 1383 | CG8616-RA | 460..1380 | 939..19 | 4561 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BHD-RA | 1557 | CG8616-RA | 553..1473 | 939..19 | 4579 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7239094..7239793 | 939..240 | 3489 | 99.9 | Minus |
| 3L | 28110227 | 3L | 7240044..7240161 | 136..19 | 575 | 99.2 | Minus |
| 3L | 28110227 | 3L | 7239883..7239985 | 239..137 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:08:37 has no hits.
BO09621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:02 Download gff for
BO09621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8616-PA | 460..1383 | 18..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:56 Download gff for
BO09621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8616-PA | 460..1383 | 18..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:29:31 Download gff for
BO09621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BHD-RA | 553..1473 | 19..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:51:01 Download gff for
BO09621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BHD-RA | 553..1473 | 19..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:51:01 Download gff for
BO09621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7239094..7239793 | 240..939 | 99 | -> | Minus |
| 3L | 7239883..7239985 | 137..239 | 100 | -> | Minus |
| 3L | 7240044..7240161 | 19..136 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:29:31 Download gff for
BO09621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7232194..7232893 | 240..939 | 99 | -> | Minus |
| arm_3L | 7232983..7233085 | 137..239 | 100 | -> | Minus |
| arm_3L | 7233144..7233261 | 19..136 | 99 | | Minus |
BO09621.5prime Sequence
907 bp (902 high quality bases) assembled on 2006-01-28
> BO09621.5prime
GAAGTTATCAGTCGACATGAACGCCGTGATAGCGCTGTGCCACTTTTGCG
AGGCGCACGGTCCCTGCGCCATCTTCTGCACCCAGACACTGAGGGACACC
AAGCTGGAGGACCTGTCACTGGAACAGCAGACGCAAAAGACCTGCTCCGC
CTGCAATTACTCCATGGGCAAGAATAACAATGCGATCTACAGCAGGGACA
CGGAAAGCGGGGCCACATTCGTCAGCACCAAGGTGGCGGTGCTGCCGGAG
GTGGCCAGTCTGGTCAAGCAGGCGGCTGTGCTCAGTCTGAGCAATGGTAC
GGATGCCAGCAAGGATGGCGAGTTCGTGTTCTTTGGCGATTCGTCCAGGG
GTCACATCCTGAGTCACACCTTCCGAGTGAGCGACCTGCAGGCCCGCGGC
TACTCGCAGCTGTTCTCCATCATTGTGCTGATGAAGGACAAGTATTTCCT
GCTTAACATCAAGCCCTTTCTGGCGGAGCACCTGAAGAAGGTGTCGTCGG
AGCTGCAGGCAGCTGCCAAAAAGACCAAGGAGACGGAGGAGCAGACGTAC
TCAGAGCGACAGAGGCGTCTGTCCGGCGCTCAGTTCCTGATGCCCACTTC
CCGTGCCTTGCTGGAGCTAACAGGCGAGGAGCACATCTTCGCCCAGTTGC
ACTCACACTTCTCGTGGCTCCTGCTAGCCGGATCCCGCTTCCTCACCGAG
CACGTGACCTTCGGCAACCTACCGTGGCTACCGCCACAAAGTAGTGGCCG
TCCTCCCGCACAGCGACTCACCTACAACAGTTCCACACTGCCAATGATAG
AGAGCATCGACGATCCCGATCTGGAGGAGTTCTTCTCGTTGCGCCATCTC
AAGAGTGTCGTCCGCAAGGAGGAGTTTGCCACGGTCTGCTATTGTGCCTT
GACTGGG
BO09621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8616-PA | 1383 | CG8616-RA | 1..891 | 17..907 | 4430 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BHD-RA | 1557 | CG8616-RA | 94..984 | 17..907 | 4440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:08:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7238635..7239525 | 17..907 | 4440 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:08:03 has no hits.
BO09621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:03 Download gff for
BO09621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8616-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:21:58 Download gff for
BO09621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8616-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:08 Download gff for
BO09621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BHD-RA | 89..984 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:06:03 Download gff for
BO09621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BHD-RA | 89..984 | 9..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:06:03 Download gff for
BO09621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7238630..7239525 | 9..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:08 Download gff for
BO09621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7231730..7232625 | 9..907 | 99 | | Plus |
BO09621.complete Sequence
1414 bp assembled on 2008-08-15
GenBank Submission: FJ631546
> BO09621.complete
GAAGTTATCAGTCGACATGAACGCCGTGATAGCGCTGTGCCACTTTTGCG
AGGCGCACGGTCCCTGCGCCATCTTCTGCACCCAGACACTGAGGGACACC
AAGCTGGAGGACCTGTCACTGGAACAGCAGACGCAAAAGACCTGCTCCGC
CTGCAATTACTCCATGGGCAAGAATAACAATGCGATCTACAGCAGGGACA
CGGAAAGCGGGGCCACATTCGTCAGCACCAAGGTGGCGGTGCTGCCGGAG
GTGGCCAGTCTGGTCAAGCAGGCGGCTGTGCTCAGTCTGAGCAATGGTAC
GGATGCCAGCAAGGATGGCGAGTTCGTGTTCTTTGGCGATTCGTCCAGGG
GTCACATCCTGAGTCACACCTTCCGAGTGAGCGACCTGCAGGCCCGCGGC
TACTCGCAGCTGTTCTCCATCATTGTGCTGATGAAGGACAAGTATTTCCT
GCTTAACATCAAGCCCTTTCTGGCGGAGCACCTGAAGAAGGTGTCGTCGG
AGCTGCAGGCAGCTGCCAAAAAGACCAAGGAGACGGAGGAGCAGACGTAC
TCAGAGCGACAGAGGCGTCTGTCCGGCGCTCAGTTCCTGATGCCCACTTC
CCGTGCCTTGCTGGAGCTAACAGGCGAGGAGCACATCTTCGCCCAGTTGC
ACTCACACTTCTCGTGGCTCCTGCTAGCCGGATCCCGCTTCCTCACCGAG
CACGTGACCTTCGGCAACCTACCGTGGCTACCGCCACAAAGTAGTGGCCG
TCCTCCCGCACAGCGACTCACCTACAACAGTTCCACACTGCCAATGATAG
AGAGCATCGACGATCCCGATCTGGAGGAGTTCTTCTCGTTGCGCCATCTC
AAGAGTGTCGTCCGCAAGGAGGAGTTTGCCACGGTCTGCTATTGTGCCTT
GACTGGGGTGAAGATTGTGGTCAGAGGTGATCCCAGAAAGACCTTCCGTT
TCATGGTCTGCCTGAAGAAACTCCTGCCCGAGCCCATGCACAATCTAATG
CGAATCGATGCCCAACATCAACACTCCATCAGCTCCGAGTACAAAATCAT
ATCCGTGTCCAATGACATAGCCGTGCCAATGGCCAGTAGCTCCGTTTATC
GGATCGATTTTCTGGACAAACACGTCAACGGACACGAGGTGTCGGTCAAA
TGGCCAGGAGAGCTGCCACGAAAATTGCCAGATCTTATGGTGAAACTTTT
AAAGGCGGTGGAGGAGAAAAACTTCACAGAACTCGTGCTGAACAAGCAGA
CCAAGGTGCTCATCGAAGAGTGGAAAAACAAAGTGACCTGCCTCAACCAT
GCCAAATCCACCAGCGTGCAGGGCAAACTTAAGAAGGTGCTTGGCGTGCA
GCCGCACGATCAGCCGATCATTAACTACTGGAGCACACACCTTCACGCAA
GCTTTCTAGACCAT
BO09621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BHD-RA | 1383 | CG8616-PA | 1..1380 | 17..1396 | 6870 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BHD-RA | 1557 | CG8616-RA | 94..1473 | 17..1396 | 6870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7238635..7239793 | 17..1175 | 5780 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7240044..7240161 | 1279..1396 | 575 | 99.2 | Plus |
| 3L | 28110227 | 3L | 7239883..7239985 | 1176..1278 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:56 has no hits.
BO09621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:17 Download gff for
BO09621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8616-RA | 89..1473 | 9..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:23 Download gff for
BO09621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BHD-RA | 94..1473 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:12 Download gff for
BO09621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8616-RA | 94..1473 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:59 Download gff for
BO09621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BHD-RA | 94..1473 | 17..1398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:59 Download gff for
BO09621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7239883..7239985 | 1176..1278 | 100 | -> | Plus |
| 3L | 7240044..7240161 | 1279..1398 | 97 | | Plus |
| 3L | 7238635..7239793 | 17..1175 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:23 Download gff for
BO09621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7232983..7233085 | 1176..1278 | 100 | -> | Plus |
| arm_3L | 7233144..7233261 | 1279..1398 | 97 | | Plus |
| arm_3L | 7231735..7232893 | 17..1175 | 99 | -> | Plus |
BO09621.pep Sequence
Translation from 16 to 1414
> BO09621.pep
MNAVIALCHFCEAHGPCAIFCTQTLRDTKLEDLSLEQQTQKTCSACNYSM
GKNNNAIYSRDTESGATFVSTKVAVLPEVASLVKQAAVLSLSNGTDASKD
GEFVFFGDSSRGHILSHTFRVSDLQARGYSQLFSIIVLMKDKYFLLNIKP
FLAEHLKKVSSELQAAAKKTKETEEQTYSERQRRLSGAQFLMPTSRALLE
LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQR
LTYNSSTLPMIESIDDPDLEEFFSLRHLKSVVRKEEFATVCYCALTGVKI
VVRGDPRKTFRFMVCLKKLLPEPMHNLMRIDAQHQHSISSEYKIISVSND
IAVPMASSSVYRIDFLDKHVNGHEVSVKWPGELPRKLPDLMVKLLKAVEE
KNFTELVLNKQTKVLIEEWKNKVTCLNHAKSTSVQGKLKKVLGVQPHDQP
IINYWSTHLHASFLDH
BO09621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BHD-PA | 460 | CG8616-PA | 1..460 | 1..460 | 2385 | 100 | Plus |
