Clone Sequence Records
BO09634.3prime Sequence
668 bp (667 high quality bases) assembled on 2006-01-28
> BO09634.3prime
ATGGTCTAGAAAGCTTGCGTTCACATACGCCTCCATCAGCTTCAGCAGCA
AATGGTGATACGCCTCGTACTCATCCTTTCCGAACTCATTCGGATCGTGC
CGAGCATGTTCGTACATATCGCAATATTGGTGAATCATTCGCTGCCCTGC
TCCGTTCAGCGTCACCGATAAAGTGGTCAGCAGAAAGGCCCTCAAACTTT
CAGGAGCATGTCGGGAGCTACCGTCCGCCCTCGCTATTTCGGATTCTAGC
AGTTTCACGTCATCAACCGCCTTCATGCGGTAGTAGTAGGGTGGCAATGG
TGCCTCCTGCTCCGGCTGAACGATGTACTTGTCGCCATCGTCCCACAGCA
GTTTCGGCTCCTGCGTGATTTTCTGGATGCAATCTAGGCGCCGCTCAATC
TCTCTCCTTAGTGCCTTCTTGGCATCATTGCCTACCGGAACGTGGGGCCC
CCGACGTCCTCGCAGCTGAAAGCGCATAATCTGCCGCTTGGCAAAGATGA
ACAGCATCAGACAAGTAAGTACTCCTCCGCTGATTATGATGATTATCATC
ACGCCCGAAAGCTGTTCCATGTTGCCGCCCGCCTTGCTGGCCTTCTCCTG
AAGACTCGGTGCGGCGTAGTCGCCTACCTTATGCAGGCGCAGATGCCCAT
CCATGTCGACTGATAACT
BO09634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-PA | 639 | CG6665-RA | 1..636 | 654..19 | 3055 | 99.2 | Minus |
| CG6665-PC | 1050 | CG6665-RC | 1..626 | 654..29 | 3005 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-RC | 1395 | CG6665-RC | 98..728 | 659..29 | 3065 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16957562..16958202 | 659..19 | 3115 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:53:45 has no hits.
BO09634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:17 Download gff for
BO09634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-PC | 1..626 | 29..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:19 Download gff for
BO09634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-PA | 1..639 | 18..654 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:51:16 Download gff for
BO09634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 93..728 | 29..668 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:48 Download gff for
BO09634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 93..728 | 29..668 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:48 Download gff for
BO09634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16957557..16958202 | 19..668 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:51:16 Download gff for
BO09634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12845062..12845707 | 19..668 | 98 | | Minus |
BO09634.5prime Sequence
668 bp (667 high quality bases) assembled on 2006-01-28
> BO09634.5prime
GAAGTTATCAGTCGACATGGATGGGCATCTGCGCCTGCATAAGGTAGGCG
ACTACGCCGCACCGAGTCTTCAGGAGAAGGCCAGCAAGGCGGGCGGCAAC
ATGGAACAGCTTTCGGGCGTGATGATAATCATCATAATCAGCGGAGGAGT
ACTTACTTGTCTGATGCTGTTCATCTTTGCCAAGCGGCAGATTATGCGCT
TTCAGCTGCGAGGACGTCGGGGGCCCCACGTTCCGGTAGGCAATGATGCC
AAGAAGGCACTAAGGAGAGAGATTGAGCGGCGCCTAGATTGCATCCAGAA
AATCACGCAGGAGCCGAAACTGCTGTGGGACGATGGCGACAAGTACATCG
TTCAGCCGGAGCAGGAGGCACCATTGCCACCCTACTACTACCGCATGAAG
GCGGTTGATGACGTGAAACTGCTAGAATCCGAAATAGCGAGGGCGGACGG
TAGCTCCCGACATGCTCCTGAAAGTTTGAGGGCCTTTCTGCTGACCACTT
TATCGGTGACGCTGAACGGAGCAGGGCAGCGAATGATTCACCAATATTGC
GATATGTACGAACATGCTCGGCACGATCCGAATGAGTTCGGAAAGGATGA
GTACGAGGCGTATCACCATTTGCTGCTGAAGCTGATGGAGGCGTATGTGA
ACGCAAGCTTTCTAGACC
BO09634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-PA | 639 | CG6665-RA | 1..636 | 17..652 | 3055 | 99.2 | Plus |
| CG6665-PC | 1050 | CG6665-RC | 1..626 | 17..642 | 3005 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-RC | 1395 | CG6665-RC | 98..728 | 12..642 | 3065 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16957562..16958202 | 12..652 | 3115 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:50:26 has no hits.
BO09634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:18 Download gff for
BO09634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-PC | 1..626 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:20 Download gff for
BO09634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-PA | 1..639 | 17..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:13 Download gff for
BO09634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 92..728 | 2..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:24:40 Download gff for
BO09634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 92..728 | 2..642 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:24:40 Download gff for
BO09634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16957556..16958202 | 2..652 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:13 Download gff for
BO09634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12845061..12845707 | 2..652 | 98 | | Plus |
BO09634.complete Sequence
670 bp assembled on 2008-08-15
GenBank Submission: FJ631547
> BO09634.complete
GAAGTTATCAGTCGACATGGATGGGCATCTGCGCCTGCATAAGGTAGGCG
ACTACGCCGCACCGAGTCTTCAGGAGAAGGCCAGCAAGGCGGGCGGCAAC
ATGGAACAGCTTTCGGGCGTGATGATAATCATCATAATCAGCGGAGGAGT
ACTTACTTGTCTGATGCTGTTCATCTTTGCCAAGCGGCAGATTATGCGCT
TTCAGCTGCGAGGACGTCGGGGGCCCCACGTTCCGGTAGGCAATGATGCC
AAGAAGGCACTAAGGAGAGAGATTGAGCGGCGCCTAGATTGCATCCAGAA
AATCACGCAGGAGCCGAAACTGCTGTGGGACGATGGCGACAAGTACATCG
TTCAGCCGGAGCAGGAGGCACCATTGCCACCCTACTACTACCGCATGAAG
GCGGTTGATGACGTGAAACTGCTAGAATCCGAAATAGCGAGGGCGGACGG
TAGCTCCCGACATGCTCCTGAAAGTTTGAGGGCCTTTCTGCTGACCACTT
TATCGGTGACGCTGAACGGAGCAGGGCAGCGAATGATTCACCAATATTGC
GATATGTACGAACATGCTCGGCACGATCCGAATGAGTTCGGAAAGGATGA
GTACGAGGCGTATCACCATTTGCTGCTGAAGCTGATGGAGGCGTATGTGA
ACGCAAGCTTTCTAGACCAT
BO09634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-RC | 1050 | CG6665-PC | 1..626 | 17..642 | 3055 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-RC | 1395 | CG6665-RC | 98..728 | 12..642 | 3065 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16957562..16958202 | 12..652 | 3115 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:37:39 has no hits.
BO09634.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:34 Download gff for
BO09634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RA | 55..701 | 2..652 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:16 Download gff for
BO09634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 103..728 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:16 Download gff for
BO09634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RA | 66..701 | 17..654 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:23 Download gff for
BO09634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 103..728 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:23 Download gff for
BO09634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16957567..16958202 | 17..654 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:16 Download gff for
BO09634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12845072..12845707 | 17..654 | 98 | | Plus |
BO09634.pep Sequence
Translation from 16 to 670
> BO09634.pep
MDGHLRLHKVGDYAAPSLQEKASKAGGNMEQLSGVMIIIIISGGVLTCLM
LFIFAKRQIMRFQLRGRRGPHVPVGNDAKKALRREIERRLDCIQKITQEP
KLLWDDGDKYIVQPEQEAPLPPYYYRMKAVDDVKLLESEIARADGSSRHA
PESLRAFLLTTLSVTLNGAGQRMIHQYCDMYEHARHDPNEFGKDEYEAYH
HLLLKLMEAYVNASFLDH
BO09634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-PC | 349 | CG6665-PC | 1..209 | 1..209 | 1093 | 100 | Plus |
