Clone Sequence Records
BO09636.complete Sequence
1963 bp assembled on 2010-02-17
GenBank Submission: KX799038
> BO09636.complete
GAAGTTATCAGTCGACATGAGTGCAAAATTGCCATGGCAACGTGAATCGA
ACACGAACAGCAACACCCACACAGAGACCATTGAAGATCCGCGCATTGTG
GCGCAGTATTGCATCAGCAACTGCCAACACATTATGGAGTCCTTCCTGAG
TCTCTTTGATCCCAATCAGGACGACGGCTTCGAGGAAGAGCCCGAGCTCA
ATGGCAACAGCAGCGGCGGCGGAAGCAGCAGCAGCGACTATGAGACGGAC
GCCAATGCCAACGAGTGCAGCGTAGTGAGCGGGATGCCCACCGAGCGGGG
CAACCTGATCTTCGACTTCGAGCAGGGAATGCTGCCACCAGAGCCGCAGC
TCGGAAATGTGGAGTACAAGCTGAAGCTGGTCAACCCGTCGAAGCAGCGA
TTCGAGCACCTGGTGACCCAGATGAAGTGGCGTCTGCGCGAGGGAAACGG
CGAGGCCATCTACGAGATTGGAGTATCCGACGCCGGCTATCTGCAGGGAC
TCAGCGACAAGGACATGAATGCCTCGCTCACCACGCTCAAGCAGATGGCC
CACAGCCTAGGAGCCAGTACCTCAGTGCTGCGGCGAAAGACCATCGCCGC
CCGACGCGCCGTCGCCGAGGTACTGGTCCGTAAGATCCCCGACGACCAGC
ACAACATCGAGGTTCGGGTGGCGGTGCTCGGCGGAGCTGATGCAGGCAAA
TCCACTTTGCTGGGCGTGCTTACACAGGACGAGCTGGATAACGGACACGG
CCGGGCGCGGCTCAATATGTTTAGGCACATGCACGAGATTCAGTCTGGCC
GCACCTCCTGCATCTCCCACGAGACGCTTGGCTTCGATGCACTGGGTAAT
GTGGTCAACTACAAGTACAATGAGATGATGACGGCAGAGGAGATTAGCGA
CAGGTCCAGCAAGCTGGTTACCTTCATGGATCTAGCCGGACACCGACGCT
ACATGCGCACCACCGTGCAGGCACTGAGTGGATACTCACCCCACTACGCC
ATGCTGGTGGTATCGGCGGGCAGCGGTTGCAACGACACCACCGAGGAGCA
CTTGGCTATCGTGCGGGCACTGGACATGCCCTTCTTTGTATTGGTCACGA
AGACAGATATCACATCGCCGGACGCGACGGTACAGGAGTTGTGCAACCTG
CTCACCACCATTGGGTGCCGGAAGGTTCCCTTTGTGGTGACCAACACGGA
TGAGGCCATCTCCGCCGGGTCAAACCAGATCTCCGAGAACATTGTGCCCA
TCTTTTGCGTATCGAATGTGACCGGCACGGGACTCAACCTAGTCACAAAG
TTTCTGTACGTCCTTTCGCCCGGAATCAGCAACGCCGAGAAGGATCGACT
CGAGCAGGAGTCTTGCGAGTTCCAGGTGGACGAGATCTTCCGGGTCTCTG
ACGTCGGACCCGTTGTGGGCGGTCTACTTGTCCAGGGCGTGCTGACCGAG
AATATGGCAATGAAGATTGGTCCGCTTCCCGATGGTAGCTTTCATCCCGT
TACTGTTAATACTATCCACCGAAACAAGGCTCCTTGCCGAGTTGTCCGAG
CTGGTCAGAGCGCTTCGCTGTCTTTCAGTATGGATCAGGATGTGCCCACG
CTACGAAGTGGCATGGTTCTTTTGGGTGATATTGGAAATAGTCTGGATGA
GCCCTACGGGACCTTCTTCTTCCAAGCCAAGGTGTCCGTGCTGTTCCACG
CCACGGCCATCTATGTCGGCTTCCAAACCACAGTCCACATAGGCAGCATT
CGCCAGACGGCCGTCATTCGGGGCATTATGGGCGGCGAGCGACTGGGCAC
AAACGATTGTGCTTCGGTGATGTTCGAGTTCGTCGGCCACCCGGAGTACG
TGCGTCCTGGAATGCGCATCCTGTTCCGCGAGGGCACCAGCAAAGGAATC
GGAGTTGTCACGCAGGTGTTTCCGGTCAACAAGACAGGCATAAAGGCAAG
CTTTCTAGACCAT
BO09636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RA | 1932 | CG2017-PA | 1..1929 | 17..1945 | 9645 | 100 | Plus |
| CG2017-RE | 1815 | CG2017-PE | 1..1812 | 134..1945 | 9060 | 100 | Plus |
| CG2017-RB | 1815 | CG2017-PB | 1..1812 | 134..1945 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RA | 2289 | CG2017-RA | 127..2057 | 15..1945 | 9655 | 100 | Plus |
| CG2017-RE | 2144 | CG2017-RE | 92..1912 | 125..1945 | 9105 | 100 | Plus |
| CG2017-RB | 2368 | CG2017-RB | 316..2136 | 125..1945 | 9105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5858642..5859521 | 1676..797 | 4400 | 100 | Minus |
| 3R | 32079331 | 3R | 5859731..5860404 | 798..125 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 5858315..5858584 | 1945..1676 | 1350 | 100 | Minus |
| 3R | 32079331 | 3R | 5862170..5862279 | 124..15 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:14:42 has no hits.
BO09636.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:10 Download gff for
BO09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 135..2063 | 17..1947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:59 Download gff for
BO09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 129..2057 | 17..1947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:02 Download gff for
BO09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 129..2057 | 17..1947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:02 Download gff for
BO09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5858313..5858584 | 1676..1947 | 99 | <- | Minus |
| 3R | 5858643..5859520 | 798..1675 | 100 | <- | Minus |
| 3R | 5859732..5860404 | 125..797 | 100 | <- | Minus |
| 3R | 5862170..5862277 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:59 Download gff for
BO09636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1684035..1684306 | 1676..1947 | 99 | <- | Minus |
| arm_3R | 1684365..1685242 | 798..1675 | 100 | <- | Minus |
| arm_3R | 1685454..1686126 | 125..797 | 100 | <- | Minus |
| arm_3R | 1687892..1687999 | 17..124 | 100 | | Minus |
BO09636.3prime Sequence
878 bp (749 high quality bases) assembled on 2006-01-28
> BO09636.3prime
ATGGTCTAGAAAGCTTGCCTTTATGCCTGTCTTGTTGACCGGAAACACCT
GCGTGACAACTCCGATTCCTTTGCTGGTGCCCTCGCGGAACAGGATGCGC
ATTCCAGGACGCACGTACTCCGGGTGGCCGACGAACTCGAACATCACCGA
AGCACAATCGTTTGTGCCCAGTCGCTCGCCGCCCATAATGCCCCGAATGA
CGGCCGTCTGGCGAATGCTGCCTATGTGGACTGTGGTTTGGAAGCCGACA
TAGATGGCCGTGGCGTGGAACAGCACGGACACCTTGGCTTGGAAGAAGAA
GGTCCCGTAGGGCTCATCCAGACTATTTCCAATATCACCCAAAAGAACCA
TGCCACTTCGTAGCGTGGGCACATCCTGATCCATACTGAAAGACAGCGAA
GCGCTCTGACCAGCTCGGACAACTCGGCAAGGAGCCTTGTTTCGGTGGAT
AGTATTAACAGTAACGGGATGAAAGCTACCATCGGGAAGCGGACCAATCT
TCATTGCCATATTCTCGGTCAGCACGCCCTGGACAAGTAGACCGCCCACA
ACGGGTCCGACGTCAGAGACCCGGAAGATCTCGTCCACCTGGAACTCGCA
AGACTCCTGCTCGAGTCGATCCTTCTCGGCGTTGCTGATTCCGGGCGAAA
GGACGTACAGAAACTTTGTGACTAGGTTGAGTCCCGTGCCGGTCACATTC
GATACGCAAAAGATGGGCACAATGTTCTCGGAGATCTGGTTTGACCCGGC
GGAGATGGCCTCATCCGTGTTGGTCACCACAAAGGGAACCTTCCGGCACC
CAATGGTGGTGAGCAGGTTGCACAACTCCTGTACCGTCGCGTCCGGCGAT
GTGATATCTGTCTTCCTGACCAATACAA
BO09636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-PA | 1932 | CG2017-RA | 1070..1929 | 878..19 | 4275 | 99.8 | Minus |
| CG2017-PD | 1815 | CG2017-RD | 953..1812 | 878..19 | 4275 | 99.8 | Minus |
| CG2017-PC | 1815 | CG2017-RC | 953..1812 | 878..19 | 4275 | 99.8 | Minus |
| CG2017-PB | 1815 | CG2017-RB | 953..1812 | 878..19 | 4275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RE | 2144 | CG2017-RE | 1053..1912 | 878..19 | 4285 | 99.9 | Minus |
| CG2017-RB | 2368 | CG2017-RB | 1277..2136 | 878..19 | 4285 | 99.9 | Minus |
| CG2017-RC | 2209 | CG2017-RC | 1118..1977 | 878..19 | 4285 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5858642..5859232 | 288..878 | 2940 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5858315..5858584 | 19..288 | 1350 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:15:04 has no hits.
BO09636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:21 Download gff for
BO09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-PA | 1072..1932 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:24 Download gff for
BO09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-PB | 955..1815 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:04:12 Download gff for
BO09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RC | 1120..1977 | 19..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:40 Download gff for
BO09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RC | 1120..1977 | 19..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:40 Download gff for
BO09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5858315..5858584 | 19..288 | 100 | <- | Plus |
| 3R | 5858643..5859230 | 289..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:04:12 Download gff for
BO09636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1684037..1684306 | 19..288 | 100 | <- | Plus |
| arm_3R | 1684365..1684952 | 289..876 | 99 | | Plus |
BO09636.5prime Sequence
885 bp (849 high quality bases) assembled on 2006-01-28
> BO09636.5prime
GAAGTTATCAGTCGACATGAGTGCAAAATTGCCATGGCAACGTGAATCGA
ACACGAACAGCAACACCCACACAGAGACCATTGAAGATCCGCGCATTGTG
GCGCAGTATTGCATCAGCAACTGCCAACACATTATGGAGTCCTTCCTGAG
TCTCTTTGATCCCAATCAGGACGACGGCTTCGAGGAAGAGCCCGAGCTCA
ATGGCAACAGCAGCGGCGGCGGAAGCAGCAGCAGCGACTATGAGACGGAC
GCCAATGCCAACGAGTGCAGCGTAGTGAGCGGGATGCCCACCGAGCGGGG
CAACCTGATCTTCGACTTCGAGCAGGGAATGCTGCCACCAGAGCCGCAGC
TCGGAAATGTGGAGTACAAGCTGAAGCTGGTCAACCCGTCGAAGCAGCGA
TTCGAGCACCTGGTGACCCAGATGAAGTGGCGTCTGCGCGAGGGAAACGG
CGAGGCCATCTACGAGATTGGAGTATCCGACGCCGGCTATCTGCAGGGAC
TCAGCGACAAGGACATGAATGCCTCGCTCACCACGCTCAAGCAGATGGCC
CACAGCCTAGGAGCCAGTACCTCAGTGCTGCGGCGAAAGACCATCGCCGC
CCGACGCGCCGTCGCCGAGGTACTGGTCCGTAAGATCCCCGACGACCAGC
ACAACATCGAGGTTCGGGTGGCGGTGCTCGGCGGAGCTGATGCAGGCAAA
TCCACTTTGCTGGGCGTGCTTACACAGGACGAGCTGGATAACGGACACGG
CCGGGCGCGGCTCAATATGTTTAGGCACATGCACGAGATTCAGTCTGGCC
GCACCTCCTGCATCTCCCACGAGACGCTTGGCTTCGATGCACTGGGTAAT
GTGGTCAACTACAAGTACAATGAGATGATGACGGC
BO09636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-PA | 1932 | CG2017-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
| CG2017-PD | 1815 | CG2017-RD | 1..752 | 134..885 | 3760 | 100 | Plus |
| CG2017-PC | 1815 | CG2017-RC | 1..752 | 134..885 | 3760 | 100 | Plus |
| CG2017-PB | 1815 | CG2017-RB | 1..752 | 134..885 | 3760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RA | 2289 | CG2017-RA | 127..997 | 15..885 | 4355 | 100 | Plus |
| CG2017-RE | 2144 | CG2017-RE | 92..852 | 125..885 | 3805 | 100 | Plus |
| CG2017-RB | 2368 | CG2017-RB | 316..1076 | 125..885 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5859731..5860404 | 798..125 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 5862170..5862279 | 124..15 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 5859433..5859521 | 885..797 | 445 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1106..1161 | 199..254 | 109 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2866 | 199..249 | 108 | 70.6 | Plus |
BO09636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:22 Download gff for
BO09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:26 Download gff for
BO09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:19 Download gff for
BO09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 127..997 | 15..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:23 Download gff for
BO09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 127..997 | 15..885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:23 Download gff for
BO09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5859433..5859520 | 798..885 | 100 | <- | Minus |
| 3R | 5859732..5860404 | 125..797 | 100 | <- | Minus |
| 3R | 5862170..5862279 | 15..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:19 Download gff for
BO09636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1685155..1685242 | 798..885 | 100 | <- | Minus |
| arm_3R | 1685454..1686126 | 125..797 | 100 | <- | Minus |
| arm_3R | 1687892..1688001 | 15..124 | 100 | | Minus |
BO09636.pep Sequence
Translation from 16 to 1963
> BO09636.pep
MSAKLPWQRESNTNSNTHTETIEDPRIVAQYCISNCQHIMESFLSLFDPN
QDDGFEEEPELNGNSSGGGSSSSDYETDANANECSVVSGMPTERGNLIFD
FEQGMLPPEPQLGNVEYKLKLVNPSKQRFEHLVTQMKWRLREGNGEAIYE
IGVSDAGYLQGLSDKDMNASLTTLKQMAHSLGASTSVLRRKTIAARRAVA
EVLVRKIPDDQHNIEVRVAVLGGADAGKSTLLGVLTQDELDNGHGRARLN
MFRHMHEIQSGRTSCISHETLGFDALGNVVNYKYNEMMTAEEISDRSSKL
VTFMDLAGHRRYMRTTVQALSGYSPHYAMLVVSAGSGCNDTTEEHLAIVR
ALDMPFFVLVTKTDITSPDATVQELCNLLTTIGCRKVPFVVTNTDEAISA
GSNQISENIVPIFCVSNVTGTGLNLVTKFLYVLSPGISNAEKDRLEQESC
EFQVDEIFRVSDVGPVVGGLLVQGVLTENMAMKIGPLPDGSFHPVTVNTI
HRNKAPCRVVRAGQSASLSFSMDQDVPTLRSGMVLLGDIGNSLDEPYGTF
FFQAKVSVLFHATAIYVGFQTTVHIGSIRQTAVIRGIMGGERLGTNDCAS
VMFEFVGHPEYVRPGMRILFREGTSKGIGVVTQVFPVNKTGIKASFLDH
BO09636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-PA | 643 | CG2017-PA | 1..643 | 1..643 | 3317 | 100 | Plus |
| CG2017-PE | 604 | CG2017-PE | 1..604 | 40..643 | 3103 | 100 | Plus |
| CG2017-PB | 604 | CG2017-PB | 1..604 | 40..643 | 3103 | 100 | Plus |
| CG2017-PC | 604 | CG2017-PC | 1..604 | 40..643 | 3103 | 100 | Plus |
| CG2017-PD | 604 | CG2017-PD | 1..604 | 40..643 | 3103 | 100 | Plus |
