Clone Sequence Records
BO09644.3prime Sequence
945 bp (944 high quality bases) assembled on 2006-01-28
> BO09644.3prime
ATGGTCTAGAAAGCTTGCCCTGGTGTTGCGCAGTTTTCGCTCCTTCCAAG
TTGCGAACTTGCTGTTGGCGGTGCGCAGCAGCTGATTCAAGTGCTGCGTC
AGCGAGGATCGCAGTGGCGAAAGTTCGTGCATAGCGCGGTTCTCAAAAGG
CACTAGTTTGGCCATTTTGAAGCGCTGCAACGTCTCGTGCATACGCTGTA
ACTTTGTCTCCAGCTCTTCTGAGGTGGGCGGAAAGCAGCTCCAAAAGTGT
TTCAGCAGCTCGGACAGCGAAAGGTATAAGTGGCGCAGCTCTCGTTGGAA
GTCGTTCGGAACAAGTTGTCCCGCTGACTGCTCTTGGAAACCGCGCATCA
TGGAACCGCCAGGACTTAGTTCACCCAGAGCATTTACTGCCGCCTTAGAA
CAGATGAACGTTCGTTGCACGTTGCGGTTTAGCCATGACTCCGAATTCCG
CACCAGCTTGTACTGCACCTCTTCAAGACTCATTGGATCGTTGTGGTTGT
CGTACATGCTGTTCTGGACAGGGCCATTGAGGTAACGCTCCACTTTGGAC
AGTTCGAAGTGCTTAGACTTGGCTTTCTCGCCGTTGGCGGAATCATCTCC
CTCCAATATAGGGTCCCCGAGATCCACATAGTGAATCTTTTCCATCAGTC
GTTGCTTTTTGCTCTGCGGCTCGTCTTTGTCCACCTGATCGGAGGAACTC
TTCGTCGCGGTGGCCGTGGCCTGGCCCTTTCCATTCATCCCGTTCGTATA
CGCGGATTGGGAAACAGGCCCGTTGGCATTATTGGTACCATTGGTCATAG
TTGACGGCGCTGAGGTCACGTTAGCACAGGTCTTAAGCACCATGATGGAA
TGCTGATTGAATCGCTTGATCATGTTTTGGTGCACAATATTCCCGCTGTT
CACGACGTTGCGGTCCCCTGCTACGCTGCCAAAGCCCTCTTCTAA
BO09644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8151-PB | 1758 | Tfb1-RB | 832..1755 | 942..19 | 4620 | 100 | Minus |
CG8151-PC | 1758 | Tfb1-RC | 832..1755 | 942..19 | 4620 | 100 | Minus |
CG8151-PA | 1758 | Tfb1-RA | 832..1755 | 942..19 | 4620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-RD | 2018 | CG8151-RD | 971..1894 | 942..19 | 4620 | 100 | Minus |
Tfb1-RA | 2145 | CG8151-RA | 1098..2021 | 942..19 | 4620 | 100 | Minus |
Tfb1-RC | 2022 | CG8151-RC | 975..1898 | 942..19 | 4620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14364311..14364935 | 942..318 | 3125 | 100 | Minus |
2R | 25286936 | 2R | 14364996..14365171 | 317..142 | 880 | 100 | Minus |
2R | 25286936 | 2R | 14365221..14365349 | 147..19 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:44:54 has no hits.
BO09644.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:38 Download gff for
BO09644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-PC | 831..1758 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:48 Download gff for
BO09644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8151-PA | 831..1758 | 18..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:08:34 Download gff for
BO09644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 972..1904 | 15..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:40 Download gff for
BO09644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 972..1904 | 15..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:40 Download gff for
BO09644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14365227..14365355 | 15..141 | 98 | | Minus |
2R | 14364308..14364935 | 318..945 | 99 | -> | Minus |
2R | 14364996..14365171 | 142..317 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:08:34 Download gff for
BO09644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10251813..10252440 | 318..945 | 99 | -> | Minus |
arm_2R | 10252501..10252676 | 142..317 | 100 | -> | Minus |
arm_2R | 10252732..10252860 | 15..141 | 98 | | Minus |
BO09644.5prime Sequence
954 bp (845 high quality bases) assembled on 2006-01-28
> BO09644.5prime
GAAGTTATCAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGA
TGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAAT
GAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCA
TCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCA
AGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCAC
TTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGT
CAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACA
AAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTG
CAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTT
CTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCC
AGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACA
GACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTG
CATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGC
CTGCCAAAATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCCAATCACAC
TACTTTCATCGTGACAGACTGACAGCCGGCACAAAGGACATATTCACGGA
GTGCGGCAAGATCGATGACCAAGCATTAAAAGCGGCTGTTCAGCAGGGAG
CTGGTGATCCTTTGCTAGACCTTAAAAAGTTTGAGGATGTTCCTTTAGAA
GAGGGCTTTGGCAGCGTAGCAGGGGACCCGCACGTCGTGAACAGCGGGAA
TATTGTGCACCAAAACATGATCAAGCGATTCAATCAGCATTCCATCATGG
TGCT
BO09644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8151-PB | 1758 | Tfb1-RB | 1..862 | 17..878 | 4235 | 99.6 | Plus |
CG8151-PC | 1758 | Tfb1-RC | 1..862 | 17..878 | 4235 | 99.6 | Plus |
CG8151-PA | 1758 | Tfb1-RA | 1..862 | 17..878 | 4235 | 99.6 | Plus |
CG8151-PB | 1758 | Tfb1-RB | 866..938 | 882..954 | 365 | 100 | Plus |
CG8151-PC | 1758 | Tfb1-RC | 866..938 | 882..954 | 365 | 100 | Plus |
CG8151-PA | 1758 | Tfb1-RA | 866..938 | 882..954 | 365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-RD | 2018 | CG8151-RD | 140..1077 | 17..954 | 4600 | 99.5 | Plus |
Tfb1-RA | 2145 | CG8151-RA | 267..1204 | 17..954 | 4600 | 99.5 | Plus |
Tfb1-RC | 2022 | CG8151-RC | 144..1081 | 17..954 | 4600 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14363972..14364417 | 509..954 | 2155 | 98.9 | Plus |
2R | 25286936 | 2R | 14363576..14363916 | 171..511 | 1690 | 99.7 | Plus |
2R | 25286936 | 2R | 14363360..14363513 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:46:47 has no hits.
BO09644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:38 Download gff for
BO09644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-PC | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:49 Download gff for
BO09644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8151-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:20:29 Download gff for
BO09644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 144..1081 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:26 Download gff for
BO09644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 144..1081 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:26 Download gff for
BO09644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14363360..14363513 | 17..170 | 100 | -> | Plus |
2R | 14363576..14363914 | 171..509 | 99 | -> | Plus |
2R | 14363973..14364417 | 510..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:20:29 Download gff for
BO09644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10250865..10251018 | 17..170 | 100 | -> | Plus |
arm_2R | 10251081..10251419 | 171..509 | 99 | -> | Plus |
arm_2R | 10251478..10251922 | 510..954 | 99 | | Plus |
BO09644.complete Sequence
1789 bp assembled on 2008-08-15
GenBank Submission: FJ631548
> BO09644.complete
GAAGTTATCAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGA
TGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAAT
GAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCA
TCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCA
AGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCAC
TTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGT
CAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACA
AAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTG
CAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTT
CTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCC
AGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACA
GACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTG
CATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGC
CTGCCAAAATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCCAATCACAC
TACTTTCATCGTGACAGACTGACAGCCGGCACAAAGGACATATTCACGGA
GTGCGGCAAGATCGATGACCAAGCATTAAAAGCGGCTGTTCAGCAGGGAG
CTGGTGATCCTTTGCTAGACCTTAAAAAGTTTGAGGATGTTCCTTTAGAA
GAGGGCTTTGGCAGCGTAGCAGGGGACCGCAACGTCGTGAACAGCGGGAA
TATTGTGCACCAAAACATGATCAAGCGATTCAATCAGCATTCCATCATGG
TGCTTAAGACCTGTGCTAACGTGACCTCAGCGCCGTCAACTATGACCAAT
GGTACCAATAATGCCAACGGGCCTGTTTCCCAATCCGCGTATACGAACGG
GATGAATGGAAAGGGCCAGGCCACGGCCACCGCGACGAAGAGTTCCTCCG
ATCAGGTGGACAAAGACGAGCCGCAGAGCAAAAAGCAACGACTGATGGAA
AAGATTCACTATGTGGATCTCGGGGACCCTATATTGGAGGGAGATGATTC
CGCCAACGGCGAGAAAGCCAAGTCTAAGCACTTCGAACTGTCCAAAGTGG
AGCGTTACCTCAATGGCCCTGTCCAGAACAGCATGTACGACAACCACAAC
GATCCAATGAGTCTTGAAGAGGTGCAGTACAAGCTGGTGCGGAATTCGGA
GTCATGGCTAAACCGCAACGTGCAACGAACGTTCATCTGTTCTAAGGCGG
CAGTAAATGCTCTGGGTGAACTAAGTCCTGGCGGTTCCATGATGCGCGGT
TTCCAAGAGCAGTCAGCGGGACAACTTGTTCCGAACGACTTCCAACGAGA
GCTGCGCCACTTATACCTTTCGCTGTCCGAGCTGCTGAAACACTTTTGGA
GCTGCTTTCCGCCCACCTCAGAAGAGCTGGAGACAAAGTTACAGCGTATG
CACGAGACGTTGCAGCGCTTCAAAATGGCCAAACTAGTGCCTTTTGAGAA
CCGCGCTATGCACGAACTTTCGCCACTGCGATCCTCGCTGACGCAGCACT
TGAATCAGCTGCTGCGCACCGCCAACAGCAAGTTCGCAACTTGGAAGGAG
CGAAAACTGCGCAACACCAGGGCAAGCTTTCTAGACCAT
BO09644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-RD | 1758 | CG8151-PD | 1..1755 | 17..1771 | 8730 | 99.8 | Plus |
Tfb1-RA | 1758 | CG8151-PA | 1..1755 | 17..1771 | 8730 | 99.8 | Plus |
Tfb1-RC | 1758 | CG8151-PC | 1..1755 | 17..1771 | 8730 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-RD | 2018 | CG8151-RD | 140..1894 | 17..1771 | 8730 | 99.8 | Plus |
Tfb1-RA | 2145 | CG8151-RA | 267..2021 | 17..1771 | 8730 | 99.8 | Plus |
Tfb1-RC | 2022 | CG8151-RC | 144..1898 | 17..1771 | 8730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14363972..14364935 | 509..1472 | 4790 | 99.8 | Plus |
2R | 25286936 | 2R | 14363576..14363916 | 171..511 | 1690 | 99.7 | Plus |
2R | 25286936 | 2R | 14364996..14365171 | 1473..1648 | 880 | 100 | Plus |
2R | 25286936 | 2R | 14363360..14363513 | 17..170 | 770 | 100 | Plus |
2R | 25286936 | 2R | 14365221..14365349 | 1643..1771 | 630 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:43:25 has no hits.
BO09644.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:53 Download gff for
BO09644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RA | 267..2027 | 17..1775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:20 Download gff for
BO09644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 144..1898 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:56 Download gff for
BO09644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RA | 267..2021 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:54 Download gff for
BO09644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb1-RC | 144..1898 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:54 Download gff for
BO09644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14363576..14363914 | 171..509 | 99 | -> | Plus |
2R | 14363360..14363513 | 17..170 | 100 | -> | Plus |
2R | 14363973..14364935 | 510..1472 | 99 | -> | Plus |
2R | 14364996..14365171 | 1473..1648 | 100 | -> | Plus |
2R | 14365227..14365349 | 1649..1773 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:20 Download gff for
BO09644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10250865..10251018 | 17..170 | 100 | -> | Plus |
arm_2R | 10251081..10251419 | 171..509 | 99 | -> | Plus |
arm_2R | 10251478..10252440 | 510..1472 | 99 | -> | Plus |
arm_2R | 10252501..10252676 | 1473..1648 | 100 | -> | Plus |
arm_2R | 10252732..10252854 | 1649..1773 | 98 | | Plus |
BO09644.pep Sequence
Translation from 16 to 1789
> BO09644.pep
MTTSSEDVLLQMGEVRYKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADI
KTQKISPEGKPKVQLQVVLHDGNTSTFHFVNRQGQAAMLADRDKVKELLQ
QLLPNFKRKVDKDLEDKNRILVENPNLLQLYKDLVITKVLTSDEFWATHA
KDHALKKMGRSQEIGVSGAFLADIKPQTDGCNGLKYNLTSDVIHCIFKTY
PAVKRKHFENVPAKMSEAEFWTKFFQSHYFHRDRLTAGTKDIFTECGKID
DQALKAAVQQGAGDPLLDLKKFEDVPLEEGFGSVAGDRNVVNSGNIVHQN
MIKRFNQHSIMVLKTCANVTSAPSTMTNGTNNANGPVSQSAYTNGMNGKG
QATATATKSSSDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDSANGEK
AKSKHFELSKVERYLNGPVQNSMYDNHNDPMSLEEVQYKLVRNSESWLNR
NVQRTFICSKAAVNALGELSPGGSMMRGFQEQSAGQLVPNDFQRELRHLY
LSLSELLKHFWSCFPPTSEELETKLQRMHETLQRFKMAKLVPFENRAMHE
LSPLRSSLTQHLNQLLRTANSKFATWKERKLRNTRASFLDH
BO09644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tfb1-PD | 585 | CG8151-PD | 1..585 | 1..585 | 3052 | 100 | Plus |
Tfb1-PA | 585 | CG8151-PA | 1..585 | 1..585 | 3052 | 100 | Plus |
Tfb1-PC | 585 | CG8151-PC | 1..585 | 1..585 | 3052 | 100 | Plus |
Tfb1-PB | 585 | CG8151-PB | 1..585 | 1..585 | 3052 | 100 | Plus |