Clone BO09644 Report

Search the DGRC for BO09644

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptTfb1-RA
Protein status:BO09644.pep: Imported from assembly
Sequenced Size:1789

Clone Sequence Records

BO09644.3prime Sequence

945 bp (944 high quality bases) assembled on 2006-01-28

> BO09644.3prime
ATGGTCTAGAAAGCTTGCCCTGGTGTTGCGCAGTTTTCGCTCCTTCCAAG
TTGCGAACTTGCTGTTGGCGGTGCGCAGCAGCTGATTCAAGTGCTGCGTC
AGCGAGGATCGCAGTGGCGAAAGTTCGTGCATAGCGCGGTTCTCAAAAGG
CACTAGTTTGGCCATTTTGAAGCGCTGCAACGTCTCGTGCATACGCTGTA
ACTTTGTCTCCAGCTCTTCTGAGGTGGGCGGAAAGCAGCTCCAAAAGTGT
TTCAGCAGCTCGGACAGCGAAAGGTATAAGTGGCGCAGCTCTCGTTGGAA
GTCGTTCGGAACAAGTTGTCCCGCTGACTGCTCTTGGAAACCGCGCATCA
TGGAACCGCCAGGACTTAGTTCACCCAGAGCATTTACTGCCGCCTTAGAA
CAGATGAACGTTCGTTGCACGTTGCGGTTTAGCCATGACTCCGAATTCCG
CACCAGCTTGTACTGCACCTCTTCAAGACTCATTGGATCGTTGTGGTTGT
CGTACATGCTGTTCTGGACAGGGCCATTGAGGTAACGCTCCACTTTGGAC
AGTTCGAAGTGCTTAGACTTGGCTTTCTCGCCGTTGGCGGAATCATCTCC
CTCCAATATAGGGTCCCCGAGATCCACATAGTGAATCTTTTCCATCAGTC
GTTGCTTTTTGCTCTGCGGCTCGTCTTTGTCCACCTGATCGGAGGAACTC
TTCGTCGCGGTGGCCGTGGCCTGGCCCTTTCCATTCATCCCGTTCGTATA
CGCGGATTGGGAAACAGGCCCGTTGGCATTATTGGTACCATTGGTCATAG
TTGACGGCGCTGAGGTCACGTTAGCACAGGTCTTAAGCACCATGATGGAA
TGCTGATTGAATCGCTTGATCATGTTTTGGTGCACAATATTCCCGCTGTT
CACGACGTTGCGGTCCCCTGCTACGCTGCCAAAGCCCTCTTCTAA

BO09644.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8151-PB 1758 Tfb1-RB 832..1755 942..19 4620 100 Minus
CG8151-PC 1758 Tfb1-RC 832..1755 942..19 4620 100 Minus
CG8151-PA 1758 Tfb1-RA 832..1755 942..19 4620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RD 2018 CG8151-RD 971..1894 942..19 4620 100 Minus
Tfb1-RA 2145 CG8151-RA 1098..2021 942..19 4620 100 Minus
Tfb1-RC 2022 CG8151-RC 975..1898 942..19 4620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14364311..14364935 942..318 3125 100 Minus
2R 25286936 2R 14364996..14365171 317..142 880 100 Minus
2R 25286936 2R 14365221..14365349 147..19 630 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 10:44:54 has no hits.

BO09644.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:38 Download gff for BO09644.3prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-PC 831..1758 18..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:48 Download gff for BO09644.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8151-PA 831..1758 18..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:08:34 Download gff for BO09644.3prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 972..1904 15..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:40 Download gff for BO09644.3prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 972..1904 15..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:40 Download gff for BO09644.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14365227..14365355 15..141 98   Minus
2R 14364308..14364935 318..945 99 -> Minus
2R 14364996..14365171 142..317 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:08:34 Download gff for BO09644.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10251813..10252440 318..945 99 -> Minus
arm_2R 10252501..10252676 142..317 100 -> Minus
arm_2R 10252732..10252860 15..141 98   Minus

BO09644.5prime Sequence

954 bp (845 high quality bases) assembled on 2006-01-28

> BO09644.5prime
GAAGTTATCAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGA
TGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAAT
GAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCA
TCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCA
AGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCAC
TTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGT
CAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACA
AAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTG
CAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTT
CTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCC
AGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACA
GACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTG
CATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGC
CTGCCAAAATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCCAATCACAC
TACTTTCATCGTGACAGACTGACAGCCGGCACAAAGGACATATTCACGGA
GTGCGGCAAGATCGATGACCAAGCATTAAAAGCGGCTGTTCAGCAGGGAG
CTGGTGATCCTTTGCTAGACCTTAAAAAGTTTGAGGATGTTCCTTTAGAA
GAGGGCTTTGGCAGCGTAGCAGGGGACCCGCACGTCGTGAACAGCGGGAA
TATTGTGCACCAAAACATGATCAAGCGATTCAATCAGCATTCCATCATGG
TGCT

BO09644.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8151-PB 1758 Tfb1-RB 1..862 17..878 4235 99.6 Plus
CG8151-PC 1758 Tfb1-RC 1..862 17..878 4235 99.6 Plus
CG8151-PA 1758 Tfb1-RA 1..862 17..878 4235 99.6 Plus
CG8151-PB 1758 Tfb1-RB 866..938 882..954 365 100 Plus
CG8151-PC 1758 Tfb1-RC 866..938 882..954 365 100 Plus
CG8151-PA 1758 Tfb1-RA 866..938 882..954 365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RD 2018 CG8151-RD 140..1077 17..954 4600 99.5 Plus
Tfb1-RA 2145 CG8151-RA 267..1204 17..954 4600 99.5 Plus
Tfb1-RC 2022 CG8151-RC 144..1081 17..954 4600 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14363972..14364417 509..954 2155 98.9 Plus
2R 25286936 2R 14363576..14363916 171..511 1690 99.7 Plus
2R 25286936 2R 14363360..14363513 17..170 770 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:46:47 has no hits.

BO09644.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:38 Download gff for BO09644.5prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-PC 1..938 17..954 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:49 Download gff for BO09644.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8151-PA 1..938 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:20:29 Download gff for BO09644.5prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 144..1081 17..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:26 Download gff for BO09644.5prime
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 144..1081 17..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:26 Download gff for BO09644.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14363360..14363513 17..170 100 -> Plus
2R 14363576..14363914 171..509 99 -> Plus
2R 14363973..14364417 510..954 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:20:29 Download gff for BO09644.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10250865..10251018 17..170 100 -> Plus
arm_2R 10251081..10251419 171..509 99 -> Plus
arm_2R 10251478..10251922 510..954 99   Plus

BO09644.complete Sequence

1789 bp assembled on 2008-08-15

GenBank Submission: FJ631548

> BO09644.complete
GAAGTTATCAGTCGACATGACCACCAGCAGTGAGGACGTGCTGCTCCAGA
TGGGCGAGGTGCGGTACAAGAAGGGCGACGGCACGCTCTACGTAATGAAT
GAGCGTGTGGCCTGGATGGCGGAACACCGGGACACGGTAACAGTCTCCCA
TCGTTATGCGGATATCAAGACTCAAAAGATATCTCCTGAGGGCAAGCCCA
AGGTGCAGCTGCAAGTGGTTCTTCACGACGGCAACACATCGACCTTCCAC
TTCGTCAACCGCCAGGGACAGGCCGCAATGCTTGCCGACAGGGACAAGGT
CAAGGAGCTATTGCAGCAACTGCTTCCTAACTTCAAGCGGAAGGTGGACA
AAGACCTGGAAGACAAGAACCGCATCCTTGTTGAGAATCCCAACCTGCTG
CAACTCTACAAGGACCTTGTCATAACCAAAGTCCTAACCAGCGATGAGTT
CTGGGCTACGCATGCCAAGGATCACGCCCTTAAGAAAATGGGCAGATCCC
AGGAGATCGGTGTTTCTGGCGCCTTTCTGGCCGACATAAAGCCGCAGACA
GACGGCTGTAATGGCCTCAAGTACAACCTCACCTCTGATGTGATTCACTG
CATTTTCAAGACCTATCCCGCCGTTAAACGCAAACATTTTGAGAATGTGC
CTGCCAAAATGTCCGAGGCCGAGTTTTGGACCAAGTTTTTCCAATCACAC
TACTTTCATCGTGACAGACTGACAGCCGGCACAAAGGACATATTCACGGA
GTGCGGCAAGATCGATGACCAAGCATTAAAAGCGGCTGTTCAGCAGGGAG
CTGGTGATCCTTTGCTAGACCTTAAAAAGTTTGAGGATGTTCCTTTAGAA
GAGGGCTTTGGCAGCGTAGCAGGGGACCGCAACGTCGTGAACAGCGGGAA
TATTGTGCACCAAAACATGATCAAGCGATTCAATCAGCATTCCATCATGG
TGCTTAAGACCTGTGCTAACGTGACCTCAGCGCCGTCAACTATGACCAAT
GGTACCAATAATGCCAACGGGCCTGTTTCCCAATCCGCGTATACGAACGG
GATGAATGGAAAGGGCCAGGCCACGGCCACCGCGACGAAGAGTTCCTCCG
ATCAGGTGGACAAAGACGAGCCGCAGAGCAAAAAGCAACGACTGATGGAA
AAGATTCACTATGTGGATCTCGGGGACCCTATATTGGAGGGAGATGATTC
CGCCAACGGCGAGAAAGCCAAGTCTAAGCACTTCGAACTGTCCAAAGTGG
AGCGTTACCTCAATGGCCCTGTCCAGAACAGCATGTACGACAACCACAAC
GATCCAATGAGTCTTGAAGAGGTGCAGTACAAGCTGGTGCGGAATTCGGA
GTCATGGCTAAACCGCAACGTGCAACGAACGTTCATCTGTTCTAAGGCGG
CAGTAAATGCTCTGGGTGAACTAAGTCCTGGCGGTTCCATGATGCGCGGT
TTCCAAGAGCAGTCAGCGGGACAACTTGTTCCGAACGACTTCCAACGAGA
GCTGCGCCACTTATACCTTTCGCTGTCCGAGCTGCTGAAACACTTTTGGA
GCTGCTTTCCGCCCACCTCAGAAGAGCTGGAGACAAAGTTACAGCGTATG
CACGAGACGTTGCAGCGCTTCAAAATGGCCAAACTAGTGCCTTTTGAGAA
CCGCGCTATGCACGAACTTTCGCCACTGCGATCCTCGCTGACGCAGCACT
TGAATCAGCTGCTGCGCACCGCCAACAGCAAGTTCGCAACTTGGAAGGAG
CGAAAACTGCGCAACACCAGGGCAAGCTTTCTAGACCAT

BO09644.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RD 1758 CG8151-PD 1..1755 17..1771 8730 99.8 Plus
Tfb1-RA 1758 CG8151-PA 1..1755 17..1771 8730 99.8 Plus
Tfb1-RC 1758 CG8151-PC 1..1755 17..1771 8730 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-RD 2018 CG8151-RD 140..1894 17..1771 8730 99.8 Plus
Tfb1-RA 2145 CG8151-RA 267..2021 17..1771 8730 99.8 Plus
Tfb1-RC 2022 CG8151-RC 144..1898 17..1771 8730 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14363972..14364935 509..1472 4790 99.8 Plus
2R 25286936 2R 14363576..14363916 171..511 1690 99.7 Plus
2R 25286936 2R 14364996..14365171 1473..1648 880 100 Plus
2R 25286936 2R 14363360..14363513 17..170 770 100 Plus
2R 25286936 2R 14365221..14365349 1643..1771 630 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 23:43:25 has no hits.

BO09644.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:53 Download gff for BO09644.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RA 267..2027 17..1775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:20 Download gff for BO09644.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 144..1898 17..1773 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:56 Download gff for BO09644.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RA 267..2021 17..1773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:54 Download gff for BO09644.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb1-RC 144..1898 17..1773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:54 Download gff for BO09644.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14363576..14363914 171..509 99 -> Plus
2R 14363360..14363513 17..170 100 -> Plus
2R 14363973..14364935 510..1472 99 -> Plus
2R 14364996..14365171 1473..1648 100 -> Plus
2R 14365227..14365349 1649..1773 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:20 Download gff for BO09644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10250865..10251018 17..170 100 -> Plus
arm_2R 10251081..10251419 171..509 99 -> Plus
arm_2R 10251478..10252440 510..1472 99 -> Plus
arm_2R 10252501..10252676 1473..1648 100 -> Plus
arm_2R 10252732..10252854 1649..1773 98   Plus

BO09644.pep Sequence

Translation from 16 to 1789

> BO09644.pep
MTTSSEDVLLQMGEVRYKKGDGTLYVMNERVAWMAEHRDTVTVSHRYADI
KTQKISPEGKPKVQLQVVLHDGNTSTFHFVNRQGQAAMLADRDKVKELLQ
QLLPNFKRKVDKDLEDKNRILVENPNLLQLYKDLVITKVLTSDEFWATHA
KDHALKKMGRSQEIGVSGAFLADIKPQTDGCNGLKYNLTSDVIHCIFKTY
PAVKRKHFENVPAKMSEAEFWTKFFQSHYFHRDRLTAGTKDIFTECGKID
DQALKAAVQQGAGDPLLDLKKFEDVPLEEGFGSVAGDRNVVNSGNIVHQN
MIKRFNQHSIMVLKTCANVTSAPSTMTNGTNNANGPVSQSAYTNGMNGKG
QATATATKSSSDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDSANGEK
AKSKHFELSKVERYLNGPVQNSMYDNHNDPMSLEEVQYKLVRNSESWLNR
NVQRTFICSKAAVNALGELSPGGSMMRGFQEQSAGQLVPNDFQRELRHLY
LSLSELLKHFWSCFPPTSEELETKLQRMHETLQRFKMAKLVPFENRAMHE
LSPLRSSLTQHLNQLLRTANSKFATWKERKLRNTRASFLDH

BO09644.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb1-PD 585 CG8151-PD 1..585 1..585 3052 100 Plus
Tfb1-PA 585 CG8151-PA 1..585 1..585 3052 100 Plus
Tfb1-PC 585 CG8151-PC 1..585 1..585 3052 100 Plus
Tfb1-PB 585 CG8151-PB 1..585 1..585 3052 100 Plus