Clone BO09648 Report

Search the DGRC for BO09648

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:96
Well:48
Vector:pDNR-Dual
Associated Gene/Transcript128up-RA
Protein status:BO09648.pep: Imported from assembly
Sequenced Size:1138

Clone Sequence Records

BO09648.3prime Sequence

892 bp (792 high quality bases) assembled on 2006-01-28

> BO09648.3prime
ATGGTCTAGAAAGCTTGCAACCTTCTTCACAATCTGGACCACATCCTCGT
CGTTGAGAACGTGTTCGATGCCCACCTTCTGTGGCTGATGCTTCACAGAT
GAGCCCCAAACCAGCGCATATTTAAATTCCTTGGCAATGGAGCGATGCAG
CTTGTTGCAGAAATCCTCAATGCTGGTGCGCTCGTTGTGGAGTACCACGG
GCGAGTTGTAATCGGGCAGCTGGCCCTTGGGCTTGGTGTAGATGCGCTGC
AGTCGCAGGTATTCCCACATCAGCTCCAGCAGATCGTCAAAGTTCCAGTG
GTGATGGGCCGAGATGGGCACGCAATGCGGGATCTTGTAGATGACGTCCA
GCTCCTCGATGGAGATCTGATCGATCTTGTTCAGCAGATATATGCAGGGT
ATGTAGATGCGGTTGCCCTCGATAACGTCAATGAGGTCGTCACTAGTGGC
GTCGTATCTCAGGGTGATGTCCGCATTGTGGATCTTGTACTCGGATAGAA
TGGTCTTCACCAGATCCGTGTCCAACTCGGACTGCGGAACCATGCTGTTC
AGATTGATGCCACCCTTGTCCTTCCGCTTGTAGTAGATATTTGGTGGTTT
CTTGTTAAGCCGGATGCCGAAGCCCTCCAATTCATGCTCGAGGAGTTTCT
TGTGGCCAAGCGGTTTCAGGCAATCCAGCACCATGAAAATGAGGTTACAG
GTGCGAGCGACAGCAATCACCTGACGACCTCGACCCTTGCCATCCTTAGC
GCCCTCAATGATACCGGGCAAGTCCAGCAGCTGGATCTTAGCGCCCTTGT
ACTTAATGCATCCCGGCACAGTGGTCAACGTTGTGAATTCGTATGCCGCC
ACCTCGGAGTAAACGCCAGCCAAGTTGGAGAGCAGTGTGGAT

BO09648.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8340-PA 1107 128up-RA 231..1104 892..19 4370 100 Minus
CG6195-PA 1092 CG6195-RA 733..768 381..346 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
128up-RA 1304 CG8340-RA 356..1229 892..19 4370 100 Minus
CG6195-RA 1250 CG6195-RA 424..532 808..700 215 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12037838..12038611 892..119 3870 100 Minus
2R 25286936 2R 12038677..12038776 118..19 500 100 Minus
3R 32079331 3R 19647729..19647837 700..808 215 79.8 Plus
Blast to na_te.dros performed 2015-02-12 04:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 3268..3358 304..393 128 61.5 Plus

BO09648.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:45 Download gff for BO09648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8340-PA 231..1107 18..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:58 Download gff for BO09648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8340-PA 231..1107 18..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:48 Download gff for BO09648.3prime
Subject Subject Range Query Range Percent Splice Strand
128up-RA 356..1229 19..892 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:41 Download gff for BO09648.3prime
Subject Subject Range Query Range Percent Splice Strand
128up-RA 356..1229 19..892 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:41 Download gff for BO09648.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12037838..12038611 119..892 100 -> Minus
2R 12038677..12038776 19..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:48 Download gff for BO09648.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7925343..7926116 119..892 100 -> Minus
arm_2R 7926182..7926281 19..118 100   Minus

BO09648.5prime Sequence

949 bp (828 high quality bases) assembled on 2006-01-28

> BO09648.5prime
GAAGTTATCAGTCGACATGAGCACAATATTGGAGAAAATCTCGGCCATCG
AGTCGGAGATGGCCCGAACCCAAAAGAACAAGGCCACCTCGGCCCATTTG
GGTCTACTGAAGGCGAAGCTGGCTAAGCTGCGACGCGAACTGATTTCCCC
CAAAGGAGGCGGCGGCGGAACCGGCGAAGCTGGCTTCGAGGTGGCCAAGA
CTGGAGATGCCCGGGTGGGATTCGTAGGGTTTCCTTCTGTGGGTAAATCC
ACACTGCTCTCCAACTTGGCTGGCGTTTACTCCGAGGTGGCGGCATACGA
ATTCACAACGTTGACCACTGTGCCGGGATGCATTAAGTACAAGGGCGCTA
AGATCCAGCTGCTGGACTTGCCCGGTATCATTGAGGGCGCTAAGGATGGC
AAGGGTCGAGGTCGTCAGGTGATTGCTGTCGCTCGCACCTGTAACCTCAT
TTTCATGGTGCTGGATTGCCTGAAACCGCTTGGCCACAAGAAACTCCTCG
AGCATGAATTGGAGGGCTTCGGCATCCGGCTTAACAAGAAACCACCAAAT
ATCTACTACAAGCGGAAGGACAAGGGTGGCATCAATCTGAACAGCATGGT
TCCGCAGTCCGAGTTGGACACGGATCTGGTGAAGACCATTCTATCCGAGT
ACAAGATCCACAATGCGGACATCACCCTGAGATACGACGCCACTAGTGAC
GACCTCATTGACGTTATCGAGGGCAACCGCATCTACATACCCTGCATATA
TCTGCTGAACAAGATCGATCAGATCTCCATCGAGGAGCTGGACGTCATCT
ACAAGATCCCGCATTGCGTGCCCATCTCGGCCCATCACCACTGGAACTTT
GACGATCTGCTGGAGCTGATGTGGGAATACCTGCGACTGCAGCGCATCTA
CACCAAGCCCAAGGCCCAGCTGCCCGATTACCACTCGCCCGTGGTACTC

BO09648.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8340-PA 1107 128up-RA 1..933 17..949 4615 99.7 Plus
CG6195-PA 1092 CG6195-RA 733..768 758..793 155 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
128up-RA 1304 CG8340-RA 125..1058 16..949 4640 99.8 Plus
CG6195-RA 1250 CG6195-RA 424..532 331..439 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12037769..12038540 178..949 3830 99.7 Plus
2R 25286936 2R 12037595..12037717 57..179 615 100 Plus
2R 25286936 2R 12037422..12037464 16..58 215 100 Plus
3R 32079331 3R 19647729..19647837 439..331 215 79.8 Minus
Blast to na_te.dros performed 2015-02-10 23:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 3268..3358 835..746 128 61.5 Minus

BO09648.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:46 Download gff for BO09648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8340-PA 1..933 17..949 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:59 Download gff for BO09648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8340-PA 1..933 17..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:28:40 Download gff for BO09648.5prime
Subject Subject Range Query Range Percent Splice Strand
128up-RA 116..1058 8..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:31:43 Download gff for BO09648.5prime
Subject Subject Range Query Range Percent Splice Strand
128up-RA 116..1058 8..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:31:43 Download gff for BO09648.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12037597..12037717 59..179 100 -> Plus
2R 12037771..12038540 180..949 99   Plus
2R 12037413..12037464 8..58 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:28:40 Download gff for BO09648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7924918..7924969 8..58 94 -> Plus
arm_2R 7925102..7925222 59..179 100 -> Plus
arm_2R 7925276..7926045 180..949 99   Plus

BO09648.complete Sequence

1138 bp assembled on 2008-08-15

GenBank Submission: FJ631549

> BO09648.complete
GAAGTTATCAGTCGACATGAGCACAATATTGGAGAAAATCTCGGCCATCG
AGTCGGAGATGGCCCGAACCCAAAAGAACAAGGCCACCTCGGCCCATTTG
GGTCTACTGAAGGCGAAGCTGGCTAAGCTGCGACGCGAACTGATTTCCCC
CAAAGGAGGCGGCGGCGGAACCGGCGAAGCTGGCTTCGAGGTGGCCAAGA
CTGGAGATGCCCGGGTGGGATTCGTAGGGTTTCCTTCTGTGGGTAAATCC
ACACTGCTCTCCAACTTGGCTGGCGTTTACTCCGAGGTGGCGGCATACGA
ATTCACAACGTTGACCACTGTGCCGGGATGCATTAAGTACAAGGGCGCTA
AGATCCAGCTGCTGGACTTGCCCGGTATCATTGAGGGCGCTAAGGATGGC
AAGGGTCGAGGTCGTCAGGTGATTGCTGTCGCTCGCACCTGTAACCTCAT
TTTCATGGTGCTGGATTGCCTGAAACCGCTTGGCCACAAGAAACTCCTCG
AGCATGAATTGGAGGGCTTCGGCATCCGGCTTAACAAGAAACCACCAAAT
ATCTACTACAAGCGGAAGGACAAGGGTGGCATCAATCTGAACAGCATGGT
TCCGCAGTCCGAGTTGGACACGGATCTGGTGAAGACCATTCTATCCGAGT
ACAAGATCCACAATGCGGACATCACCCTGAGATACGACGCCACTAGTGAC
GACCTCATTGACGTTATCGAGGGCAACCGCATCTACATACCCTGCATATA
TCTGCTGAACAAGATCGATCAGATCTCCATCGAGGAGCTGGACGTCATCT
ACAAGATCCCGCATTGCGTGCCCATCTCGGCCCATCACCACTGGAACTTT
GACGATCTGCTGGAGCTGATGTGGGAATACCTGCGACTGCAGCGCATCTA
CACCAAGCCCAAGGGCCAGCTGCCCGATTACAACTCGCCCGTGGTACTCC
ACAACGAGCGCACCAGCATTGAGGATTTCTGCAACAAGCTGCATCGCTCC
ATTGCCAAGGAATTTAAATATGCGCTGGTTTGGGGCTCATCTGTGAAGCA
TCAGCCACAGAAGGTGGGCATCGAACACGTTCTCAACGACGAGGATGTGG
TCCAGATTGTGAAGAAGGTTGCAAGCTTTCTAGACCAT

BO09648.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
128up-RA 1107 CG8340-PA 1..1104 17..1120 5520 100 Plus
CG6195-RA 1092 CG6195-PA 306..414 331..439 215 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
128up-RA 1304 CG8340-RA 125..1229 16..1120 5525 100 Plus
CG6195-RA 1250 CG6195-RA 424..532 331..439 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12037769..12038611 178..1020 4215 100 Plus
2R 25286936 2R 12037595..12037717 57..179 615 100 Plus
2R 25286936 2R 12038677..12038776 1021..1120 500 100 Plus
2R 25286936 2R 12037422..12037464 16..58 215 100 Plus
3R 32079331 3R 19647729..19647837 439..331 215 79.8 Minus
Blast to na_te.dros performed 2014-11-27 17:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 3268..3358 835..746 128 61.5 Minus

BO09648.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:35 Download gff for BO09648.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 108..1221 8..1120 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:21 Download gff for BO09648.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 126..1229 17..1122 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:52 Download gff for BO09648.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 118..1221 17..1122 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:42 Download gff for BO09648.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 126..1229 17..1122 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:42 Download gff for BO09648.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12037423..12037464 17..58 100 -> Plus
2R 12037597..12037717 59..179 100 -> Plus
2R 12037771..12038611 180..1020 100 -> Plus
2R 12038677..12038776 1021..1122 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:21 Download gff for BO09648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7926182..7926281 1021..1122 98   Plus
arm_2R 7924928..7924969 17..58 100 -> Plus
arm_2R 7925102..7925222 59..179 100 -> Plus
arm_2R 7925276..7926116 180..1020 100 -> Plus

BO09648.pep Sequence

Translation from 16 to 1138

> BO09648.pep
MSTILEKISAIESEMARTQKNKATSAHLGLLKAKLAKLRRELISPKGGGG
GTGEAGFEVAKTGDARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLT
TVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCNLIFMVLD
CLKPLGHKKLLEHELEGFGIRLNKKPPNIYYKRKDKGGINLNSMVPQSEL
DTDLVKTILSEYKIHNADITLRYDATSDDLIDVIEGNRIYIPCIYLLNKI
DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKG
QLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKV
GIEHVLNDEDVVQIVKKVASFLDH

BO09648.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
128up-PA 368 CG8340-PA 1..368 1..368 1910 100 Plus
CG6195-PA 363 CG6195-PA 3..363 4..367 1056 56.3 Plus
CG13390-PA 381 CG13390-PA 148..329 29..185 202 31.3 Plus
CG10628-PA 383 CG10628-PA 130..293 47..188 179 34.5 Plus