Clone Sequence Records
BO09648.3prime Sequence
892 bp (792 high quality bases) assembled on 2006-01-28
> BO09648.3prime
ATGGTCTAGAAAGCTTGCAACCTTCTTCACAATCTGGACCACATCCTCGT
CGTTGAGAACGTGTTCGATGCCCACCTTCTGTGGCTGATGCTTCACAGAT
GAGCCCCAAACCAGCGCATATTTAAATTCCTTGGCAATGGAGCGATGCAG
CTTGTTGCAGAAATCCTCAATGCTGGTGCGCTCGTTGTGGAGTACCACGG
GCGAGTTGTAATCGGGCAGCTGGCCCTTGGGCTTGGTGTAGATGCGCTGC
AGTCGCAGGTATTCCCACATCAGCTCCAGCAGATCGTCAAAGTTCCAGTG
GTGATGGGCCGAGATGGGCACGCAATGCGGGATCTTGTAGATGACGTCCA
GCTCCTCGATGGAGATCTGATCGATCTTGTTCAGCAGATATATGCAGGGT
ATGTAGATGCGGTTGCCCTCGATAACGTCAATGAGGTCGTCACTAGTGGC
GTCGTATCTCAGGGTGATGTCCGCATTGTGGATCTTGTACTCGGATAGAA
TGGTCTTCACCAGATCCGTGTCCAACTCGGACTGCGGAACCATGCTGTTC
AGATTGATGCCACCCTTGTCCTTCCGCTTGTAGTAGATATTTGGTGGTTT
CTTGTTAAGCCGGATGCCGAAGCCCTCCAATTCATGCTCGAGGAGTTTCT
TGTGGCCAAGCGGTTTCAGGCAATCCAGCACCATGAAAATGAGGTTACAG
GTGCGAGCGACAGCAATCACCTGACGACCTCGACCCTTGCCATCCTTAGC
GCCCTCAATGATACCGGGCAAGTCCAGCAGCTGGATCTTAGCGCCCTTGT
ACTTAATGCATCCCGGCACAGTGGTCAACGTTGTGAATTCGTATGCCGCC
ACCTCGGAGTAAACGCCAGCCAAGTTGGAGAGCAGTGTGGAT
BO09648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8340-PA | 1107 | 128up-RA | 231..1104 | 892..19 | 4370 | 100 | Minus |
CG6195-PA | 1092 | CG6195-RA | 733..768 | 381..346 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-RA | 1304 | CG8340-RA | 356..1229 | 892..19 | 4370 | 100 | Minus |
CG6195-RA | 1250 | CG6195-RA | 424..532 | 808..700 | 215 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12037838..12038611 | 892..119 | 3870 | 100 | Minus |
2R | 25286936 | 2R | 12038677..12038776 | 118..19 | 500 | 100 | Minus |
3R | 32079331 | 3R | 19647729..19647837 | 700..808 | 215 | 79.8 | Plus |
Blast to na_te.dros performed 2015-02-12 04:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 3268..3358 | 304..393 | 128 | 61.5 | Plus |
BO09648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:45 Download gff for
BO09648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8340-PA | 231..1107 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:58 Download gff for
BO09648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8340-PA | 231..1107 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:48 Download gff for
BO09648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 356..1229 | 19..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:41 Download gff for
BO09648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 356..1229 | 19..892 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:41 Download gff for
BO09648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12037838..12038611 | 119..892 | 100 | -> | Minus |
2R | 12038677..12038776 | 19..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:48 Download gff for
BO09648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7925343..7926116 | 119..892 | 100 | -> | Minus |
arm_2R | 7926182..7926281 | 19..118 | 100 | | Minus |
BO09648.5prime Sequence
949 bp (828 high quality bases) assembled on 2006-01-28
> BO09648.5prime
GAAGTTATCAGTCGACATGAGCACAATATTGGAGAAAATCTCGGCCATCG
AGTCGGAGATGGCCCGAACCCAAAAGAACAAGGCCACCTCGGCCCATTTG
GGTCTACTGAAGGCGAAGCTGGCTAAGCTGCGACGCGAACTGATTTCCCC
CAAAGGAGGCGGCGGCGGAACCGGCGAAGCTGGCTTCGAGGTGGCCAAGA
CTGGAGATGCCCGGGTGGGATTCGTAGGGTTTCCTTCTGTGGGTAAATCC
ACACTGCTCTCCAACTTGGCTGGCGTTTACTCCGAGGTGGCGGCATACGA
ATTCACAACGTTGACCACTGTGCCGGGATGCATTAAGTACAAGGGCGCTA
AGATCCAGCTGCTGGACTTGCCCGGTATCATTGAGGGCGCTAAGGATGGC
AAGGGTCGAGGTCGTCAGGTGATTGCTGTCGCTCGCACCTGTAACCTCAT
TTTCATGGTGCTGGATTGCCTGAAACCGCTTGGCCACAAGAAACTCCTCG
AGCATGAATTGGAGGGCTTCGGCATCCGGCTTAACAAGAAACCACCAAAT
ATCTACTACAAGCGGAAGGACAAGGGTGGCATCAATCTGAACAGCATGGT
TCCGCAGTCCGAGTTGGACACGGATCTGGTGAAGACCATTCTATCCGAGT
ACAAGATCCACAATGCGGACATCACCCTGAGATACGACGCCACTAGTGAC
GACCTCATTGACGTTATCGAGGGCAACCGCATCTACATACCCTGCATATA
TCTGCTGAACAAGATCGATCAGATCTCCATCGAGGAGCTGGACGTCATCT
ACAAGATCCCGCATTGCGTGCCCATCTCGGCCCATCACCACTGGAACTTT
GACGATCTGCTGGAGCTGATGTGGGAATACCTGCGACTGCAGCGCATCTA
CACCAAGCCCAAGGCCCAGCTGCCCGATTACCACTCGCCCGTGGTACTC
BO09648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8340-PA | 1107 | 128up-RA | 1..933 | 17..949 | 4615 | 99.7 | Plus |
CG6195-PA | 1092 | CG6195-RA | 733..768 | 758..793 | 155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-RA | 1304 | CG8340-RA | 125..1058 | 16..949 | 4640 | 99.8 | Plus |
CG6195-RA | 1250 | CG6195-RA | 424..532 | 331..439 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12037769..12038540 | 178..949 | 3830 | 99.7 | Plus |
2R | 25286936 | 2R | 12037595..12037717 | 57..179 | 615 | 100 | Plus |
2R | 25286936 | 2R | 12037422..12037464 | 16..58 | 215 | 100 | Plus |
3R | 32079331 | 3R | 19647729..19647837 | 439..331 | 215 | 79.8 | Minus |
Blast to na_te.dros performed 2015-02-10 23:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 3268..3358 | 835..746 | 128 | 61.5 | Minus |
BO09648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:46 Download gff for
BO09648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8340-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:22:59 Download gff for
BO09648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8340-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:28:40 Download gff for
BO09648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 116..1058 | 8..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:31:43 Download gff for
BO09648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 116..1058 | 8..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:31:43 Download gff for
BO09648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12037597..12037717 | 59..179 | 100 | -> | Plus |
2R | 12037771..12038540 | 180..949 | 99 | | Plus |
2R | 12037413..12037464 | 8..58 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:28:40 Download gff for
BO09648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7924918..7924969 | 8..58 | 94 | -> | Plus |
arm_2R | 7925102..7925222 | 59..179 | 100 | -> | Plus |
arm_2R | 7925276..7926045 | 180..949 | 99 | | Plus |
BO09648.complete Sequence
1138 bp assembled on 2008-08-15
GenBank Submission: FJ631549
> BO09648.complete
GAAGTTATCAGTCGACATGAGCACAATATTGGAGAAAATCTCGGCCATCG
AGTCGGAGATGGCCCGAACCCAAAAGAACAAGGCCACCTCGGCCCATTTG
GGTCTACTGAAGGCGAAGCTGGCTAAGCTGCGACGCGAACTGATTTCCCC
CAAAGGAGGCGGCGGCGGAACCGGCGAAGCTGGCTTCGAGGTGGCCAAGA
CTGGAGATGCCCGGGTGGGATTCGTAGGGTTTCCTTCTGTGGGTAAATCC
ACACTGCTCTCCAACTTGGCTGGCGTTTACTCCGAGGTGGCGGCATACGA
ATTCACAACGTTGACCACTGTGCCGGGATGCATTAAGTACAAGGGCGCTA
AGATCCAGCTGCTGGACTTGCCCGGTATCATTGAGGGCGCTAAGGATGGC
AAGGGTCGAGGTCGTCAGGTGATTGCTGTCGCTCGCACCTGTAACCTCAT
TTTCATGGTGCTGGATTGCCTGAAACCGCTTGGCCACAAGAAACTCCTCG
AGCATGAATTGGAGGGCTTCGGCATCCGGCTTAACAAGAAACCACCAAAT
ATCTACTACAAGCGGAAGGACAAGGGTGGCATCAATCTGAACAGCATGGT
TCCGCAGTCCGAGTTGGACACGGATCTGGTGAAGACCATTCTATCCGAGT
ACAAGATCCACAATGCGGACATCACCCTGAGATACGACGCCACTAGTGAC
GACCTCATTGACGTTATCGAGGGCAACCGCATCTACATACCCTGCATATA
TCTGCTGAACAAGATCGATCAGATCTCCATCGAGGAGCTGGACGTCATCT
ACAAGATCCCGCATTGCGTGCCCATCTCGGCCCATCACCACTGGAACTTT
GACGATCTGCTGGAGCTGATGTGGGAATACCTGCGACTGCAGCGCATCTA
CACCAAGCCCAAGGGCCAGCTGCCCGATTACAACTCGCCCGTGGTACTCC
ACAACGAGCGCACCAGCATTGAGGATTTCTGCAACAAGCTGCATCGCTCC
ATTGCCAAGGAATTTAAATATGCGCTGGTTTGGGGCTCATCTGTGAAGCA
TCAGCCACAGAAGGTGGGCATCGAACACGTTCTCAACGACGAGGATGTGG
TCCAGATTGTGAAGAAGGTTGCAAGCTTTCTAGACCAT
BO09648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-RA | 1107 | CG8340-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
CG6195-RA | 1092 | CG6195-PA | 306..414 | 331..439 | 215 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-RA | 1304 | CG8340-RA | 125..1229 | 16..1120 | 5525 | 100 | Plus |
CG6195-RA | 1250 | CG6195-RA | 424..532 | 331..439 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12037769..12038611 | 178..1020 | 4215 | 100 | Plus |
2R | 25286936 | 2R | 12037595..12037717 | 57..179 | 615 | 100 | Plus |
2R | 25286936 | 2R | 12038677..12038776 | 1021..1120 | 500 | 100 | Plus |
2R | 25286936 | 2R | 12037422..12037464 | 16..58 | 215 | 100 | Plus |
3R | 32079331 | 3R | 19647729..19647837 | 439..331 | 215 | 79.8 | Minus |
Blast to na_te.dros performed 2014-11-27 17:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 3268..3358 | 835..746 | 128 | 61.5 | Minus |
BO09648.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:35 Download gff for
BO09648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 108..1221 | 8..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:21 Download gff for
BO09648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 126..1229 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:52 Download gff for
BO09648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 118..1221 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:42 Download gff for
BO09648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 126..1229 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:42 Download gff for
BO09648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12037423..12037464 | 17..58 | 100 | -> | Plus |
2R | 12037597..12037717 | 59..179 | 100 | -> | Plus |
2R | 12037771..12038611 | 180..1020 | 100 | -> | Plus |
2R | 12038677..12038776 | 1021..1122 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:21 Download gff for
BO09648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7926182..7926281 | 1021..1122 | 98 | | Plus |
arm_2R | 7924928..7924969 | 17..58 | 100 | -> | Plus |
arm_2R | 7925102..7925222 | 59..179 | 100 | -> | Plus |
arm_2R | 7925276..7926116 | 180..1020 | 100 | -> | Plus |
BO09648.pep Sequence
Translation from 16 to 1138
> BO09648.pep
MSTILEKISAIESEMARTQKNKATSAHLGLLKAKLAKLRRELISPKGGGG
GTGEAGFEVAKTGDARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLT
TVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCNLIFMVLD
CLKPLGHKKLLEHELEGFGIRLNKKPPNIYYKRKDKGGINLNSMVPQSEL
DTDLVKTILSEYKIHNADITLRYDATSDDLIDVIEGNRIYIPCIYLLNKI
DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKG
QLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKV
GIEHVLNDEDVVQIVKKVASFLDH
BO09648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-PA | 368 | CG8340-PA | 1..368 | 1..368 | 1910 | 100 | Plus |
CG6195-PA | 363 | CG6195-PA | 3..363 | 4..367 | 1056 | 56.3 | Plus |
CG13390-PA | 381 | CG13390-PA | 148..329 | 29..185 | 202 | 31.3 | Plus |
CG10628-PA | 383 | CG10628-PA | 130..293 | 47..188 | 179 | 34.5 | Plus |