Clone Sequence Records
BO09653.3prime Sequence
869 bp (745 high quality bases) assembled on 2006-01-28
> BO09653.3prime
ATGGTCTAGAAAGCTTGCGGCGGCTATTTTTTTCTCCGCCGTGCCCGTCC
ATTCCTCGCGCAAGTGGACACTACAGCCGAGGTCGCGCAACGCCGCCTTG
ATGTCCTGCTCCACACTGGGGTGCTCCTTCATTGCCATATTTAGTAGATC
CTCAACGCCGAAGGAGATCCAGGTTTCACACTGGTTCCGCGACCGTGACA
CCATATTGCGGATGGCCCACGCTCCGTTTCGCTGGACTATCTTGTGTTTG
GGATGGGCGCGAAGAGCCTCCACGATTACTTCGGCGATGCCGGTATCGAA
AAAGGCGGCACTGTGTTCCTGCACTCGGAGTGTCAGAGTAGTCACGCAGG
CCAAAGCGGCGGCAACGATGTTTTCATTGGACTGGTGCGTCTCTAGCAAT
TGCTTTATTATAGGAGCCACGCCCTGCTGTACTATATGTGACTTCACGGA
GTCTTGGCCAGCCAGGGCACGTAGCAACTTTAAGGCCTCTCTATTTAGAC
GCACCTCATCCAAATTCGAACTCATGATCTCGAAGACGGACTTCAGTCCA
CCAGCCTCGTCGATAGCTGTACAGAGTTCCTGACGCACAGCCAGTGTTCC
AATGGTCAGCAGAAGATCAGCCAGAACATTAGGATCCTGATAGGCCGGCA
AAAGTTCCACCAAGGTGATGAGCACCTCGCCTGCTATTTGGCGGGCGTGC
TCGTGGGCGCATCCAAACTCAACGCGAATGTCATCATCCAGCACTAGGAA
GCGGAAGACGGCGGTCAGTTCACGCACCAGGCGGTCCTTCCCTTTCCCTA
AAAGGGGCTTCATGAGTTTGAGTGCGGAGGTATTCATGATATTCTGGCGG
TTCATTTCATGCATGATGC
BO09653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-PA | 1395 | CG5721-RA | 542..1392 | 869..19 | 4230 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1601 | CG5721-RA | 642..1492 | 869..19 | 4240 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18182544..18183394 | 19..869 | 4240 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 05:09:38 has no hits.
BO09653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:55 Download gff for
BO09653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-PA | 542..1395 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:13 Download gff for
BO09653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-PA | 542..1395 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:12:56 Download gff for
BO09653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 642..1495 | 15..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:53:11 Download gff for
BO09653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 642..1495 | 15..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:53:11 Download gff for
BO09653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18182541..18183394 | 15..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:12:56 Download gff for
BO09653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14070046..14070899 | 15..869 | 99 | | Plus |
BO09653.5prime Sequence
946 bp (786 high quality bases) assembled on 2006-01-28
> BO09653.5prime
GAAGTTATCAGTCGACATGGCCAAGGTTATATCGCAGGACACCTTCGACG
ATGTTGTGAAGGAGAACGTTGTGGAGTTCTCGATGACTCCTTCGGAGGCG
AAAGAAGAGACCATCAAGCAATTCGAGGCACAGGGCATCAACCTGGCCAA
CATTATCAAGGACCTGTCCGTCAATCCGCAAACCGGCCAACCTGTCATCA
ACGAAACGGTGGACAAGATCAAGGAGCACATTGGCCAAAAACTGGAGGAA
ACAACGGAGCTGCTGGAACAGCTGGCCACCTTGGATGCTGAGTGCAAAAA
GTCGCTAGCCCATAGGGTTCTAGCCGGCAAAAATGGAGCCCACGATGCCC
TGATCACCCTGTTGGAGGAGACGCTCTCTGCTGAGTCACCCAACGAATCC
GTGTTAAAAAAGTCCTTGGAAGCCATCAACAGCCTGACCCACAAGCAGCC
GGATCTGTTTGATGCCGAGGCGATGGCCGTGGTTCTCAAGTTACTGGCCC
TCAAAGTGGAGAGTGAAGAAGTCACCCTGTTGACTCTTCAATGGCTGCAG
AAGGCCTGCATCATGCATGAAATGAACCGCCAGAATATCATGAATACCTC
CGCACTCAAACTCATGAAGCCCCTTTTAGGGAAAGGGAAGGACCGCCTGG
TGCGTGAACTGACCGCCGTCTTCCGCTTCCTAGTGCTGGATGATGACATT
CGCGTTGAGTTTGGATGCGCCCACGAGCACGCCCGCCAAATAGCAGGCGA
GGTGCTCATCACCTTGGTGGAACTTTTGCCGGCCTATCAGGATCCTAATG
TTCTGGCTGATCTTCTGCTGACCATTGGAACACTGGCTGTGCGTCAGGAA
CTCTGTACAGCTATCGACGAGGCTGGTGGACTGAAGTCCGTCTTCGAGAT
CATGAGTTCGAATTTGGATGAAGTGCGTCTAAATAGAGAGGGCTTT
BO09653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-PA | 1395 | CG5721-RA | 1..925 | 17..941 | 4600 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1601 | CG5721-RA | 100..1029 | 16..945 | 4620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18183007..18183821 | 945..131 | 4045 | 99.8 | Minus |
| 2R | 25286936 | 2R | 18183873..18183991 | 134..16 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:01:28 has no hits.
BO09653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:56 Download gff for
BO09653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-PA | 1..929 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:14 Download gff for
BO09653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-PA | 1..929 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:28 Download gff for
BO09653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 92..1029 | 7..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:47:38 Download gff for
BO09653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 92..1029 | 7..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:47:38 Download gff for
BO09653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18183006..18183818 | 134..946 | 99 | <- | Minus |
| 2R | 18183874..18183999 | 7..133 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:44:28 Download gff for
BO09653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14070511..14071323 | 134..946 | 99 | <- | Minus |
| arm_2R | 14071379..14071504 | 7..133 | 97 | | Minus |
BO09653.complete Sequence
1426 bp assembled on 2008-08-15
GenBank Submission: FJ631550
> BO09653.complete
GAAGTTATCAGTCGACATGGCCAAGGTTATATCGCAGGACACCTTCGACG
ATGTTGTGAAGGAGAACGTTGTGGAGTTCTCGATGACTCCTTCGGAGGCG
AAAGAAGAGACCATCAAGCAATTCGAGGCACAGGGCATCAACCTGGCCAA
CATTATCAAGGACCTGTCCGTCAATCCGCAAACCGGCCAACCTGTCATCA
ACGAAACGGTGGACAAGATCAAGGAGCACATTGGCCAAAAACTGGAGGAA
ACAACGGAGCTGCTGGAACAGCTGGCCACCTTGGATGCTGAGTGCAAAAA
GTCGCTAGCCCATAGGGTTCTAGCCGGCAAAAATGGAGCCCACGATGCCC
TGATCACCCTGTTGGAGGAGACGCTCTCTGCTGAGTCACCCAACGAATCC
GTGTTAAAAAAGTCCTTGGAAGCCATCAACAGCCTGACCCACAAGCAGCC
GGATCTGTTTGATGCCGAGGCGATGGCCGTGGTTCTCAAGTTACTGGCCC
TCAAAGTGGAGAGTGAAGAAGTCACCCTGTTGACTCTTCAATGGCTGCAG
AAGGCCTGCATCATGCATGAAATGAACCGCCAGAATATCATGAATACCTC
CGCACTCAAACTCATGAAGCCCCTTTTAGGGAAAGGGAAGGACCGCCTGG
TGCGTGAACTGACCGCCGTCTTCCGCTTCCTAGTGCTGGATGATGACATT
CGCGTTGAGTTTGGATGCGCCCACGAGCACGCCCGCCAAATAGCAGGCGA
GGTGCTCATCACCTTGGTGGAACTTTTGCCGGCCTATCAGGATCCTAATG
TTCTGGCTGATCTTCTGCTGACCATTGGAACACTGGCTGTGCGTCAGGAA
CTCTGTACAGCTATCGACGAGGCTGGTGGACTGAAGTCCGTCTTCGAGAT
CATGAGTTCGAATTTGGATGAGGTGCGTCTAAATAGAGAGGCCTTAAAGT
TGCTACGTGCCCTGGCTGGCCAAGACTCCGTGAAGTCACATATAGTACAG
CAGGGCGTGGCTCCTATAATAAAGCAATTGCTAGAGACGCACCAGTCCAA
TGAAAACATCGTTGCCGCCGCTTTGGCCTGCGTGACTACTCTGACACTCC
GAGTGCAGGAACACAGTGCCGCCTTTTTCGATACCGGCATCGCCGAAGTA
ATCGTGGAGGCTCTTCGCGCCCATCCCAAACACAAGATAGTCCAGCGAAA
CGGAGCGTGGGCCATCCGCAATATGGTGTCACGGTCGCGGAACCAGTGTG
AAACCTGGATCTCCTTCGGCGTTGAGGATCTACTAAATATGGCAATGAAG
GAGCACCCCAGTGTGGAGCAGGACATCAAGGCGGCGTTGCGCGACCTCGG
CTGTAGTGTCCACTTGCGCGAGGAATGGACGGGCACGGCGGAGAAAAAAA
TAGCCGCCGCAAGCTTTCTAGACCAT
BO09653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1395 | CG5721-PA | 1..1392 | 17..1408 | 6945 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1601 | CG5721-RA | 100..1492 | 16..1408 | 6950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18182544..18183821 | 1408..131 | 6375 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18183873..18183991 | 134..16 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:10:09 has no hits.
BO09653.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:50 Download gff for
BO09653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 115..1518 | 7..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:30 Download gff for
BO09653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 101..1492 | 17..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:19 Download gff for
BO09653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 124..1515 | 17..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:44 Download gff for
BO09653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 101..1492 | 17..1410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:44 Download gff for
BO09653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18183874..18183990 | 17..133 | 100 | | Minus |
| 2R | 18182542..18183818 | 134..1410 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:30 Download gff for
BO09653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14070047..14071323 | 134..1410 | 99 | <- | Minus |
| arm_2R | 14071379..14071495 | 17..133 | 100 | | Minus |
BO09653.pep Sequence
Translation from 16 to 1426
> BO09653.pep
MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDL
SVNPQTGQPVINETVDKIKEHIGQKLEETTELLEQLATLDAECKKSLAHR
VLAGKNGAHDALITLLEETLSAESPNESVLKKSLEAINSLTHKQPDLFDA
EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEMNRQNIMNTSALKLM
KPLLGKGKDRLVRELTAVFRFLVLDDDIRVEFGCAHEHARQIAGEVLITL
VELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLKSVFEIMSSNL
DEVRLNREALKLLRALAGQDSVKSHIVQQGVAPIIKQLLETHQSNENIVA
AALACVTTLTLRVQEHSAAFFDTGIAEVIVEALRAHPKHKIVQRNGAWAI
RNMVSRSRNQCETWISFGVEDLLNMAMKEHPSVEQDIKAALRDLGCSVHL
REEWTGTAEKKIAAASFLDH
BO09653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-PA | 464 | CG5721-PA | 1..464 | 1..464 | 2311 | 100 | Plus |
