Clone Sequence Records
BO09654.complete Sequence
2395 bp assembled on 2010-02-17
GenBank Submission: KX799906
> BO09654.complete
GAAGTTATCAGTCGACATGGAGCCATCGTTGGACAACTACAAGCTGAGCT
GCGAGCTCCTGGGCCACAGCATGGATGTGCGGGCGGTAGCGGTGGGACCT
CCAACTCCGGAAGGTCGCCAGACCATTCTGTCCGGTTCGCGGGACAAGAG
CACCAAAGTCTGGAAGCCCCATGGGAACGAGTACTTGGAAAGCCTTACTT
TGCAGGACCACAAGAACTTCATCTCGTACATCTGCTTCCTGGAGTCGGAG
CGGTGGATCTGCACGGCCAGCAACGACGCCACCATCTGCATCTACAAGCA
GGACGGCTTTGTGCCCCTGTTGACCCTCAAGGGTCACGAGTCCACGGTGT
GTGCTCTCTCGGCAGGATTGGAGCCACGAAGCCTCATCAGCGGCAGCTGG
GACAAGACCGCTCGGGTGTGGACCATCAGCGAGGCGGGTGATGTGTCCTT
CGTTGCTTTAGAGGGACACGAGGCGGCGGTTTGGGCGGTGGCCACCTTGA
AGGAGCAGCGGAAGTATGTGACTGGTGGTGCGGACAGGAACATCTACTAC
TGGAACGCGAAAGGCGAGAAGCTGCGCCTGCTTAAGGGTCACACGGATTG
CGTGAGGGGTGTCATGGGACTGGATGCGAACACACTGCTCTCCTGCGGAA
ATGACGCTGTTCTCCGCTTCTGGAACGAGGATGGTGAGTGCGTGCGCGAG
ATGAACGGACACAGCAACTACATCTACTCCATGGCTCGCAATGAGGCTCT
GGGCGACCAAGTGGTGGTCTCCTGCGGCGAGGACAGCACGTTGCGCATGT
GGAATGTGATCACCGGCGATGAGCTGGGAGCACCCATCATCCATCCCGGC
ATTTCAGTGTGGTCCGTAACGTGCCTACAGAACGGGGACATTGTCACCGG
CTGTAGCGATGGTGTGGTGAGGGTATTCAGCCACGTTCCTGCTCGCCAAG
CAAGTGAAGCAGTCCTTAAAGCCTTCGACTTAGTAGTGGCAACTAGAAAG
TCTCAGATTAATGAGGAGATTGGTGGCGTCAAGAAAACTGACCTTCCAGG
TCCGGAGGCTCTTCTGTCCAATGGAACGCGCGAGGGTCAAACGAAGATGG
TGCGCCATGCCGATGGTTCCGTGAAGTGCTACACCTGGACGCTGGGTAAC
TGGAACTTGGTAGGCGATGTAACTGGCGCAACTGGAGGAACCCAGTCGAA
CTCCGGCAAGAAACTGCACGAGGGCAAGGAGTACGACTTTGTGTTCAGCG
TGGACATTTCCGACACGGAGCCACCTATCAAGTTGCCCTACAACCGCAGC
GACGATCCGTGGCAGGCGGCCCAGACCTTCATCCATCGCCATAGCCTTCC
ACAGGCCTACCTCGACCAGGTGGCCAACTTTATTATAAAGAACTCGGAAG
GCCCCGTGCTGATGGAGCAGGCGCCAACCGGCTATCAGGATCCATTTACT
GGTGGCTCCCGCTATGTTCCTGGATCGAGCAACACCAATATGGGAAGCGG
CGGCAATGTGGATCCCTTCACTGGAGCCTCGAGTTACTCCACAGCGAGTA
GCAATGCTCAGTCGCAGGTGGATGTAAACTTTGTGCGGTCTGGCGACAAA
CACTTTCCCGTCAGCAACTACCGCATCTTCGACACCTGTGATGCCAAGAA
GGTGCTAGAGAAAATGATAGAGTTCAATGGCAAACTAAGCCTACCTGATG
GAAGAGTGGGAGAGGAGGTCTTGTTGGCCGTAATCAAACTCGCCGATCAA
TCGCCTGAGCTCGATCTGACCTCCCTGGAAGCTCTGGCCATCCTGCTGAA
GTGGCCGGCGTCCATGCAGTTCCCCGTGCTGGACATCCTTCGCCTGGCCG
TGCGAAATGAAGCCATCTTCAGTGTCCTGAACAACAGTCACAACTTCCTG
GCGACCGTTATCCCTCAATTGAGCGGCTCGGCACCCAACCAGCTCATGGT
GGTGCGCTGCCTGGCCAACATCATGAGCCACGCCGCCGGCCGGCAAAATG
TGATGTCCCGTCTGGCGGAGATCATCGATCTCGTGGGAGCCATCAAGACG
GGCAGTGCCAATCTGCAAATTGCCGTGGCCACCTTCTATTTGAACCTCAC
AATCTCCCAGACTCTGGACGTGGCGAAGTCGGAGGTGTGTCATGTGGTCA
CCTCCGGTATTGTGGAGCTGCTCAAGTGGGCCAAGGACTTGGAAGCGTGC
TACCGTTCCATGCAGGCCATCGGCAACCTGACCACCACTTCGTGCGGCCA
AGAGACCATTGCGCAGGTGGTGTCCGTGGACTATGTGATGGACAAGTTGA
GGGAACTTACCATTACTCCGCAGGACAAGAACTTCAGCAAGGTGAATTCT
GTGGGCCAGGCCCTGCTGGCTGTGTTCGCAAGCTTTCTAGACCAT
BO09654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2364 | CG5105-PB | 1..2361 | 17..2377 | 11805 | 100 | Plus |
| Plap-RC | 2364 | CG5105-PC | 1..2361 | 17..2377 | 11805 | 100 | Plus |
| Plap-RA | 2364 | CG5105-PA | 1..2361 | 17..2377 | 11805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2592 | CG5105-RB | 157..2518 | 16..2377 | 11810 | 100 | Plus |
| Plap-RC | 2746 | CG5105-RC | 311..2672 | 16..2377 | 11810 | 100 | Plus |
| Plap-RA | 2729 | CG5105-RA | 294..2655 | 16..2377 | 11810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1168695..1169566 | 1041..170 | 4345 | 99.9 | Minus |
| 2L | 23513712 | 2L | 1167246..1167954 | 2377..1669 | 3545 | 100 | Minus |
| 2L | 23513712 | 2L | 1168012..1168638 | 1668..1042 | 3135 | 100 | Minus |
| 2L | 23513712 | 2L | 1169627..1169786 | 175..16 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:14:03 has no hits.
BO09654.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:05 Download gff for
BO09654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 295..2655 | 17..2379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:47 Download gff for
BO09654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 295..2655 | 17..2379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:47 Download gff for
BO09654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 295..2655 | 17..2379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:47 Download gff for
BO09654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1167244..1167954 | 1669..2379 | 99 | <- | Minus |
| 2L | 1168012..1168638 | 1042..1668 | 100 | <- | Minus |
| 2L | 1168695..1169561 | 175..1041 | 100 | <- | Minus |
| 2L | 1169628..1169785 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:47 Download gff for
BO09654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1167244..1167954 | 1669..2379 | 99 | <- | Minus |
| arm_2L | 1168012..1168638 | 1042..1668 | 100 | <- | Minus |
| arm_2L | 1168695..1169561 | 175..1041 | 100 | <- | Minus |
| arm_2L | 1169628..1169785 | 17..174 | 100 | | Minus |
BO09654.3prime Sequence
935 bp (853 high quality bases) assembled on 2006-01-28
> BO09654.3prime
ATGGTCTAGAAAGCTTGCGAACACAGCCAGCAGGGCCTGGCCCACAGAAT
TCACCTTGCTGAAGTTCTTGTCCTGCGGAGTAATGGTAAGTTCCCTCAAC
TTGTCCATCACATAGTCCACGGACACCACCTGCGCAATGGTCTCTTGGCC
GCACGAAGTGGTGGTCAGGTTGCCGATGGCCTGCATGGAACGGTAGCACG
CTTCCAAGTCCTTGGCCCACTTGAGCAGCTCCACAATACCGGAGGTGACC
ACATGACACACCTCCGACTTCGCCACGTCCAGAGTCTGGGAGATTGTGAG
GTTCAAATAGAAGGTGGCCACGGCAATTTGCAGATTGGCACTGCCCGTCT
TGATGGCTCCCACGAGATCGATGATCTCCGCCAGACGGGACATCACATTT
TGCCGGCCGGCGGCGTGGCTCATGATGTTGGCCAGGCAGCGCACCACCAT
GAGCTGGTTGGGTGCCGAGCCGCTCAATTGAGGGATAACGGTCGCCAGGA
AGTTGTGACTGTTGTTCAGGACACTGAAGATGGCTTCATTTCGCACGGCC
AGGCGAAGGATGTCCAGCACGGGGAACTGCATGGACGCCGGCCACTTCAG
CAGGATGGCCAGAGCTTCCAGGGAGGTCAGATCGAGCTCAGGCGATTGAT
CGGCGAGTTTGATTACGGCCAACAAGACCTCCTCTCCCACTCTTCCATCA
GGTAGGCTTAGTTTGCCATTGAACTCTATCATTTTCTCTAGCACCTTCTT
GGCATCACAGGTGTCGAAGATGCGGTAGTTGCTGACGGGAAAGTGTTTGT
CGCCAGACCGCACAAAGTTTACATCCACCTGCGACTGAGCATTGCTACTC
GCTGTGAAGTAACTCGAGGCTCCAGTGAAGGGATCACATTGCCGCCGCTT
CCATATTGGTGTTGCTCGATCCAGGACATAGCGGG
BO09654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5105-PA | 2364 | Plap-RA | 1495..2361 | 885..19 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2592 | CG5105-RB | 1599..2518 | 935..19 | 4510 | 99.6 | Minus |
| Plap-RC | 2746 | CG5105-RC | 1753..2672 | 935..19 | 4510 | 99.6 | Minus |
| Plap-RA | 2729 | CG5105-RA | 1736..2655 | 935..19 | 4510 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1167246..1167954 | 19..727 | 3545 | 100 | Plus |
| 2L | 23513712 | 2L | 1168012..1168212 | 728..926 | 890 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:46:11 has no hits.
BO09654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:57 Download gff for
BO09654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-PA | 1442..2364 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:16 Download gff for
BO09654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5105-PA | 1442..2364 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:23:07 Download gff for
BO09654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 1736..2664 | 9..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:10 Download gff for
BO09654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 1736..2664 | 9..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:10 Download gff for
BO09654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1167237..1167954 | 9..727 | 99 | <- | Plus |
| 2L | 1168012..1168222 | 728..935 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:23:07 Download gff for
BO09654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1167237..1167954 | 9..727 | 99 | <- | Plus |
| arm_2L | 1168012..1168222 | 728..935 | 98 | | Plus |
BO09654.5prime Sequence
953 bp (857 high quality bases) assembled on 2006-01-28
> BO09654.5prime
GAAGTTATCAGTCGACATGGAGCCATCGTTGGACAACTACAAGCTGAGCT
GCGAGCTCCTGGGCCACAGCATGGATGTGCGGGCGGTAGCGGTGGGACCT
CCAACTCCGGAAGGTCGCCAGACCATTCTGTCCGGTTCGCGGGACAAGAG
CACCAAAGTCTGGAAGCCCCATGGGAACGAGTACTTGGAAAGCCTTACTT
TGCAGGACCACAAGAACTTCATCTCGTACATCTGCTTCCTGGAGTCGGAG
CGGTGGATCTGCACGGCCAGCAACGACGCCACCATCTGCATCTACAAGCA
GGACGGCTTTGTGCCCCTGTTGACCCTCAAGGGTCACGAGTCCACGGTGT
GTGCTCTCTCGGCAGGATTGGAGCCACGAAGCCTCATCAGCGGCAGCTGG
GACAAGACCGCTCGGGTGTGGACCATCAGCGAGGCGGGTGATGTGTCCTT
CGTTGCTTTAGAGGGACACGAGGCGGCGGTTTGGGCGGTGGCCACCTTGA
AGGAGCAGCGGAAGTATGTGACTGGTGGTGCGGACAGGAACATCTACTAC
TGGAACGCGAAAGGCGAGAAGCTGCGCCTGCTTAAGGGTCACACGGATTG
CGTGAGGGGTGTCATGGGACTGGATGCGAACACACTGCTCTCCTGCGGAA
ATGACGCTGTTCTCCGCTTCTGGAACGAGGATGGTGAGTGCGTGCGCGAG
ATGAACGGACACAGCAACTACATCTACTCCATGGCTCGCAATGAGGCTCT
GGGCGACCAAGTGGTGGTCTCCTGCGGCGAGGACAGCACGTTGCGCATGT
GGAATGTGATCACCGGCGATGAGCTGGGAGCACCCATCATCCATCCCGGC
ATTTCAGTGTGGTCCGTAACGTGCCTACAGAACGGGGACATTGTCACCGG
CTGTAGCGATGGTGTGGTGAAGGTATTCAGCCACGTTCCTGCTCGGCAAG
CAA
BO09654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5105-PA | 2364 | Plap-RA | 1..937 | 17..953 | 4635 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2592 | CG5105-RB | 157..1094 | 16..953 | 4660 | 99.8 | Plus |
| Plap-RC | 2746 | CG5105-RC | 311..1248 | 16..953 | 4660 | 99.8 | Plus |
| Plap-RA | 2729 | CG5105-RA | 294..1231 | 16..953 | 4660 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1168783..1169566 | 953..170 | 3875 | 99.6 | Minus |
| 2L | 23513712 | 2L | 1169627..1169786 | 175..16 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:39:48 has no hits.
BO09654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:16:58 Download gff for
BO09654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:23:18 Download gff for
BO09654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5105-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:38 Download gff for
BO09654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 287..1229 | 9..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:43:06 Download gff for
BO09654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 287..1229 | 9..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:43:06 Download gff for
BO09654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1168785..1169561 | 175..951 | 99 | <- | Minus |
| 2L | 1169628..1169790 | 9..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:38 Download gff for
BO09654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1168785..1169561 | 175..951 | 99 | <- | Minus |
| arm_2L | 1169628..1169790 | 9..174 | 97 | | Minus |
BO09654.pep Sequence
Translation from 16 to 2395
> BO09654.pep
MEPSLDNYKLSCELLGHSMDVRAVAVGPPTPEGRQTILSGSRDKSTKVWK
PHGNEYLESLTLQDHKNFISYICFLESERWICTASNDATICIYKQDGFVP
LLTLKGHESTVCALSAGLEPRSLISGSWDKTARVWTISEAGDVSFVALEG
HEAAVWAVATLKEQRKYVTGGADRNIYYWNAKGEKLRLLKGHTDCVRGVM
GLDANTLLSCGNDAVLRFWNEDGECVREMNGHSNYIYSMARNEALGDQVV
VSCGEDSTLRMWNVITGDELGAPIIHPGISVWSVTCLQNGDIVTGCSDGV
VRVFSHVPARQASEAVLKAFDLVVATRKSQINEEIGGVKKTDLPGPEALL
SNGTREGQTKMVRHADGSVKCYTWTLGNWNLVGDVTGATGGTQSNSGKKL
HEGKEYDFVFSVDISDTEPPIKLPYNRSDDPWQAAQTFIHRHSLPQAYLD
QVANFIIKNSEGPVLMEQAPTGYQDPFTGGSRYVPGSSNTNMGSGGNVDP
FTGASSYSTASSNAQSQVDVNFVRSGDKHFPVSNYRIFDTCDAKKVLEKM
IEFNGKLSLPDGRVGEEVLLAVIKLADQSPELDLTSLEALAILLKWPASM
QFPVLDILRLAVRNEAIFSVLNNSHNFLATVIPQLSGSAPNQLMVVRCLA
NIMSHAAGRQNVMSRLAEIIDLVGAIKTGSANLQIAVATFYLNLTISQTL
DVAKSEVCHVVTSGIVELLKWAKDLEACYRSMQAIGNLTTTSCGQETIAQ
VVSVDYVMDKLRELTITPQDKNFSKVNSVGQALLAVFASFLDH
BO09654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-PB | 787 | CG5105-PB | 1..787 | 1..787 | 4096 | 100 | Plus |
| Plap-PC | 787 | CG5105-PC | 1..787 | 1..787 | 4096 | 100 | Plus |
| Plap-PA | 787 | CG5105-PA | 1..787 | 1..787 | 4096 | 100 | Plus |
| ago-PA | 1326 | CG15010-PA | 1008..1263 | 37..304 | 239 | 30.5 | Plus |
| ago-PB | 1326 | CG15010-PB | 1008..1263 | 37..304 | 239 | 30.5 | Plus |
